PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_96
Name: TMO6
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_177	ADOF2	Not Available	81.62%
Matrix_100	AT1G48610	Not Available	79.89%
Matrix_411	DOF5.6	Not Available	79.78%
Matrix_519	ATDOF2.4	Not Available	71.88%
Matrix_35	YAB5; YAB3	Not Available	71.13%
Matrix_112	TBP2; TFIID-1	Not Available	70.66%
Matrix_126	RBE	Not Available	69.69%
Matrix_503	AT2G37430; AT3G53600	Not Available	68.92%
Matrix_239	AT5G04390	Not Available	68.43%
Matrix_379	RHL41	Not Available	67.92%
Matrix_198	STZ; C2H2; AZF3	Not Available	67.82%
Matrix_78	AT3G45610	Not Available	67.75%
Matrix_436	AT3G49930; AZF1	Not Available	65.75%
Matrix_99	DOF4.7	Not Available	65.52%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	64.63%
Matrix_425	TIFY2A	Not Available	64.47%
Matrix_487	AT1G29160	Not Available	63.72%
Matrix_248	ZFP5	Not Available	62.94%
Matrix_241	HB-1; AT5G44180	Not Available	62.58%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	62.35%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	60.22%
Motif_490	PROLAMINBOXOSGLUB1	Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene	60.11%
Matrix_84	AtGRF6	Not Available	55.54%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	54.63%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	54.46%
Motif_419	MYB4 binding site motif	Not Available	54.29%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	54.19%
Matrix_227	AT1G64620	Not Available	53.34%
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	53.10%
Matrix_341	HMGA	Not Available	52.72%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	52.50%
Matrix_486	MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.39%
Matrix_400	MYB46	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.39%
Motif_254	MYB46; MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	52.39%
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	52.05%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	51.70%
Motif_272	TAAAGSTKST1	TAAAG motif found in promoter of Solanum tuberosum KST1 gene; Target site for trans-acting StDof1 protein controlling guard cell-specific gene expression; KST1 gene encodes a K+ influx channel of guard cells	51.64%
Matrix_504	WRKY40	Not Available	51.10%
Motif_317	GAREAT	GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively	51.02%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	50.93%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	50.60%
Matrix_279	HRS1	Not Available	50.11%