| Matrix_426 | CRF1; CRF2 | Not Available | | 94.80% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 92.79% |
| Matrix_334 | AT3G23230 | Not Available | | 78.92% |
| Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 72.42% |
| Matrix_138 | RRTF1 | Not Available | | 70.66% |
| Matrix_147 | ERF3; AT1G80580 | Not Available | | 70.36% |
| Matrix_45 | DRN | Not Available | | 70.16% |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 69.84% |
| Matrix_378 | ATERF1 | Not Available | | 68.60% |
| Matrix_363 | RAP2.3 | Not Available | | 67.90% |
| Matrix_234 | RAP2.3 | Not Available | | 67.68% |
| Matrix_261 | ATERF-1 | Not Available | | 67.59% |
| Matrix_484 | ATERF13 | Not Available | | 67.56% |
| Matrix_473 | RRTF1 | Not Available | | 67.53% |
| Matrix_91 | CRF3 | Not Available | | 67.40% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 67.34% |
| Matrix_252 | RAP2.6 | Not Available | | 66.87% |
| Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 66.81% |
| Matrix_295 | ERF1 | Not Available | | 66.76% |
| Matrix_119 | RRTF1 | Not Available | | 66.54% |
| Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 66.47% |
| Matrix_146 | ORA47 | Not Available | | 65.98% |
| Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 65.97% |
| Matrix_288 | RAP2.3 | Not Available | | 65.80% |
| Matrix_272 | DEAR4 | Not Available | | 65.69% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 65.52% |
| Matrix_405 | DREB2C | Not Available | | 65.36% |
| Matrix_360 | ORA59 | Not Available | | 65.01% |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 64.58% |
| Matrix_343 | AT2G33710 | Not Available | | 64.25% |
| Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 64.25% |
| Matrix_224 | ERF1 | Not Available | | 64.19% |
| Matrix_517 | ERF12 | Not Available | | 64.08% |
| Matrix_5 | AT5G51190; ERF104 | Not Available | | 63.37% |
| Matrix_321 | HRD | Not Available | | 63.18% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 62.37% |
| Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 61.98% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 61.64% |
| Matrix_409 | DEAR3 | Not Available | | 60.94% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 60.33% |
| Motif_531 | AP2SV40 | AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 59.57% |
| Matrix_448 | ATERF6 | Not Available | | 59.51% |
| Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 59.45% |
| Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 58.94% |
| Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 58.34% |
| Motif_13 | E2F-varient binding site motif | A genome-wide identification of E2F-regulated genes in Arabidopsis | | 57.54% |
| Matrix_190 | ATERF1 | Not Available | | 56.98% |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | | 56.86% |
| Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 56.26% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 55.29% |
| Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | | 55.25% |
| Matrix_277 | RAP2.6 | Not Available | | 55.24% |
| Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 55.04% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 54.91% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 54.84% |
| Matrix_165 | KNAT1 | Not Available | | 54.52% |
| Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 54.32% |
| Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 54.31% |
| Matrix_433 | ATERF1 | Not Available | | 53.80% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 53.79% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 53.33% |
| Matrix_478 | AT1G01250 | Not Available | | 53.18% |
| Matrix_394 | DREB_U | Not Available | | 53.16% |
| Motif_622 | SORLIP2AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 52.57% |
| Matrix_504 | WRKY40 | Not Available | | 52.56% |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | | 52.50% |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 52.45% |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 52.05% |
| Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 51.91% |
| Matrix_385 | DEAR4 | Not Available | | 51.87% |
| Matrix_287 | ERF2 | Not Available | | 51.83% |
| Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | | 51.75% |
| Matrix_475 | AT5G64220 | Not Available | | 51.50% |
| Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 51.28% |
| Matrix_92 | AT1G33760 | Not Available | | 51.05% |
| Matrix_244 | DREB2C | Not Available | | 50.91% |
| Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 50.62% |
| Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 50.45% |
| Motif_239 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.35% |
| Matrix_294 | MEE35 | Not Available | | 50.26% |
| Matrix_110 | ATABI4; AT3G57600 | Not Available | | 50.20% |
| Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | | 50.15% |
| Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 50.11% |
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