PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_74
Name: LFY
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_497	AP3	Not Available	87.16%
Matrix_184	AGL15	Not Available	77.91%
Matrix_407	AP1	Not Available	77.83%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	68.94%
Matrix_208	AP1	Not Available	68.05%
Matrix_412	GL1	Not Available	65.75%
Matrix_258	WOX13	Not Available	63.29%
Matrix_72	CDF2	Not Available	61.65%
Matrix_181	Dof5.7	Not Available	60.50%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	60.39%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	60.29%
Matrix_227	AT1G64620	Not Available	60.11%
Matrix_439	AP3	Not Available	59.83%
Matrix_25	AP3	Not Available	59.78%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	58.91%
Matrix_136	SEP3	Not Available	58.50%
Matrix_132	SOC1	Not Available	58.20%
Matrix_61	ATCBF3	Not Available	57.19%
Matrix_92	AT1G33760	Not Available	56.92%
Matrix_210	ARR1	Not Available	56.56%
Matrix_97	APRR2	Not Available	56.53%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	56.20%
Matrix_176	MYB98	Not Available	56.17%
Matrix_4	ARR14	Not Available	56.01%
Matrix_383	CCA1	Not Available	55.96%
Matrix_213	ATHB22	Not Available	55.70%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	55.57%
Matrix_341	HMGA	Not Available	55.49%
Matrix_153	AP2	Not Available	55.48%
Matrix_160	RVE1	Not Available	55.42%
Matrix_491	AT1G68670; AT3G25790	Not Available	55.40%
Matrix_393	REM1	Not Available	55.30%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	55.27%
Matrix_501	DAG2	Not Available	55.17%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	54.96%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	54.87%
Matrix_308	INO	Not Available	54.85%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	54.68%
Matrix_255	cdf3	Not Available	54.62%
Matrix_352	LEC2	Not Available	54.51%
Motif_333	GLUTEBP1OS	Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds	54.51%
Matrix_99	DOF4.7	Not Available	54.49%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	54.49%
Matrix_204	WOX13	Not Available	54.43%
Matrix_324	AT2G01060	Not Available	54.29%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.28%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	54.04%
Matrix_440	LFY	Not Available	53.75%
Matrix_361	AT1G25550	Not Available	53.66%
Matrix_394	DREB_U	Not Available	53.39%
Matrix_69	AT2G03500	Not Available	53.38%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	53.35%
Matrix_262	ATGRP2B; CSDP2	Not Available	53.33%
Matrix_237	MYB55	Not Available	53.32%
Matrix_157	LHY; RVE2	Not Available	53.30%
Matrix_249	WRKY11	Not Available	53.26%
Matrix_26	ATMYB3; MYB24	Not Available	53.25%
Matrix_404	OBP4	Not Available	53.24%
Matrix_399	TGA1	Not Available	53.19%
Matrix_114	EPR1; AT3G10113	Not Available	53.16%
Matrix_109	GBF3	Not Available	53.10%
Matrix_411	DOF5.6	Not Available	53.10%
Matrix_104	PI	Not Available	53.07%
Matrix_382	AT3G04850	Not Available	53.04%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	52.86%
Matrix_452	MYB46	Not Available	52.86%
Matrix_16	AT3G04450; PHL1	Not Available	52.83%
Matrix_141	AT3G25990	Not Available	52.80%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.62%
Matrix_286	GATA7	Not Available	52.62%
Matrix_175	Dof5.7	Not Available	52.58%
Matrix_54	AHL20	Not Available	52.58%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	52.57%
Matrix_244	DREB2C	Not Available	52.55%
Matrix_80	BIM1	Not Available	52.54%
Matrix_385	DEAR4	Not Available	52.51%
Motif_11	L4DCPAL1	L4 element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA)	52.50%
Matrix_168	AHL25	Not Available	52.46%
Matrix_212	ATHB-12	Not Available	52.34%
Matrix_340	HSFC1	Not Available	52.34%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	52.31%
Matrix_17	WRKY22	Not Available	52.30%
Matrix_265	NGA3	Not Available	52.25%
Matrix_193	RAV1	Not Available	52.25%
Matrix_12	EIN3; EIL2	Not Available	52.16%
Matrix_311	TGA1	Not Available	52.15%
Matrix_46	AT4G21895	Not Available	52.13%
Matrix_430	TOE2	Not Available	51.98%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	51.95%
Matrix_354	AHL12	Not Available	51.94%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.92%
Matrix_162	AtPHR1	Not Available	51.87%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	51.81%
Matrix_420	ANAC58	Not Available	51.80%
Matrix_201	AT1G74840	Not Available	51.74%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.62%
Matrix_500	WRKY43	Not Available	51.61%
Matrix_259	AT1G50680; AT1G51120	Not Available	51.60%
Matrix_142	ZFP8	Not Available	51.58%
Motif_90	GT1MOTIFPSRBCS	GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE	51.54%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	51.49%
Matrix_143	GATA14; GATA6; GATA5	Not Available	51.43%
Matrix_148	WRKY60	Not Available	51.37%
Matrix_410	TOE2	Not Available	51.37%
Matrix_444	AT1G19485; AT4G17950	Not Available	51.23%
Matrix_384	ATWRKY17	Not Available	51.19%
Matrix_226	GATA1	Not Available	51.17%
Matrix_125	AHL12	Not Available	51.14%
Matrix_336	AT5G08520	Not Available	51.12%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	51.11%
Matrix_185	AHL25	Not Available	51.11%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	51.07%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	51.04%
Matrix_421	GLK1	Not Available	51.04%
Motif_461	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	51.02%
Matrix_177	ADOF2	Not Available	50.98%
Matrix_327	ARR11	Not Available	50.93%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	50.87%
Matrix_87	AT1G19000	Not Available	50.82%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	50.81%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.78%
Matrix_447	RVE1	Not Available	50.75%
Matrix_32	AHL25	Not Available	50.69%
Matrix_479	TOE1	Not Available	50.68%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	50.67%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	50.64%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	50.61%
Matrix_397	GT2L	Not Available	50.61%
Matrix_88	AHL12	Not Available	50.49%
Matrix_446	LBD16	Not Available	50.49%
Matrix_521	AHL20	Not Available	50.48%
Matrix_387	ORA47	Not Available	50.48%
Matrix_77	PRR5	Not Available	50.47%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	50.46%
Matrix_8	KAN1	Not Available	50.45%
Matrix_333	GATA3	Not Available	50.44%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	50.36%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	50.34%
Matrix_128	TGA2	Not Available	50.33%
Matrix_254	MYB52	Not Available	50.32%
Matrix_380	ATMYR1	Not Available	50.31%
Matrix_38	SPL14	Not Available	50.21%
Matrix_70	GATA26	Not Available	50.19%
Matrix_122	ABF1; AREB2	Not Available	50.14%
Matrix_236	CCA1	Not Available	50.09%
Matrix_370	WRKY50; WRKY51	Not Available	50.08%
Matrix_151	ASIL1	Not Available	50.08%
Matrix_93	YAB5	Not Available	50.04%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.02%