PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_66
Name: AtLEC2
Description: Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_352	LEC2	Not Available	76.64%
Matrix_135	ABI3	Not Available	74.10%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	73.88%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	72.61%
Matrix_420	ANAC58	Not Available	70.64%
Motif_669	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	69.03%
Matrix_79	FUS3	Not Available	68.04%
Matrix_509	LEC2	Not Available	67.78%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	64.59%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	64.59%
Matrix_23	ANAC46	Not Available	64.20%
Motif_22	RYREPEATLEGUMINBOX	RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean	64.14%
Matrix_116	ANAC55	Not Available	63.95%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	63.35%
Motif_511	RYREPEATGMGY2	RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)	62.29%
Motif_640	RYREPEATBNNAPA	RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	60.00%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	59.77%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	59.75%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	59.75%
Matrix_20	ANAC030; NST1; NAC066	Not Available	59.67%
Matrix_296	GBF2	Not Available	59.59%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	59.59%
Motif_28	POLLEN2LELAT52	One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -60 to -52 region; See POLLEN1LELAT52; AGAAA and TCCACCATA are required for pollen specific expression	59.55%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	59.55%
Matrix_300	bZIP68; bZIP16	Not Available	59.47%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	59.23%
Matrix_53	MYC3	Not Available	59.01%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	58.84%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	58.71%
Matrix_505	GATA8	Not Available	58.61%
Matrix_333	GATA3	Not Available	58.54%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	58.51%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	58.51%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	58.40%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	58.39%
Matrix_369	AT2G18300	Not Available	58.24%
Matrix_328	AT1G76580	Not Available	58.22%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	58.15%
Matrix_70	GATA26	Not Available	58.11%
Matrix_373	E2FE	Not Available	58.00%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	58.00%
Matrix_291	EDF3	Not Available	57.96%
Matrix_265	NGA3	Not Available	57.67%
Matrix_193	RAV1	Not Available	57.67%
Matrix_449	BIM2	Not Available	57.63%
Matrix_120	BEE2	Not Available	57.45%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	57.45%
Matrix_37	GATA27	Not Available	57.39%
Matrix_323	BIM3	Not Available	57.08%
Matrix_273	ANAC55	Not Available	57.01%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.98%
Matrix_456	bZIP60	Not Available	56.96%
Matrix_389	ILR3	Not Available	56.86%
Matrix_504	WRKY40	Not Available	56.70%
Matrix_180	SPL1	Not Available	56.66%
Matrix_159	TEM2	Not Available	56.61%
Matrix_259	AT1G50680; AT1G51120	Not Available	56.60%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	56.59%
Matrix_330	MYC2; TT8	Not Available	56.56%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	56.49%
Matrix_465	MYC4	Not Available	56.49%
Matrix_472	ZN_C2_H2	Not Available	56.20%
Matrix_319	TEM1	Not Available	56.08%
Matrix_446	LBD16	Not Available	55.88%
Matrix_447	RVE1	Not Available	55.83%
Matrix_139	OBF5	Not Available	55.76%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	55.04%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	54.90%
Motif_73	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	54.90%
Matrix_457	TGA2	Not Available	54.87%
Matrix_236	CCA1	Not Available	54.84%
Matrix_192	FHY3/FAR1	Not Available	54.70%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.56%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	54.51%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	54.39%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	54.39%
Matrix_128	TGA2	Not Available	54.30%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	54.28%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	54.19%
Motif_416	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	54.19%
Matrix_6	AT1G70000	Not Available	54.07%
Motif_278	CELLCYCLESC	cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription	53.88%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.87%
Matrix_174	ZAT2	Not Available	53.54%
Matrix_195	GATA2; GATA4	Not Available	53.46%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	53.40%
Matrix_129	ABF1	Not Available	53.33%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.28%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	53.23%
Matrix_311	TGA1	Not Available	53.21%
Matrix_151	ASIL1	Not Available	53.15%
Matrix_17	WRKY22	Not Available	53.02%
Matrix_141	AT3G25990	Not Available	53.00%
Matrix_408	GATA12	Not Available	52.97%
Matrix_363	RAP2.3	Not Available	52.76%
Matrix_75	WRKY29	Not Available	52.75%
Matrix_46	AT4G21895	Not Available	52.65%
Matrix_483	ICU4	Not Available	52.62%
Motif_301	SPHZMC1	Sph element found in the maize C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	52.61%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.57%
Matrix_204	WOX13	Not Available	52.56%
Matrix_175	Dof5.7	Not Available	52.55%
Matrix_289	WRKY25	Not Available	52.49%
Matrix_520	ARR14	Not Available	52.41%
Matrix_370	WRKY50; WRKY51	Not Available	52.39%
Matrix_84	AtGRF6	Not Available	52.30%
Motif_614	MYBGAHV	Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression	52.27%
Motif_520	AMYBOX1	amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley	52.27%
Motif_317	GAREAT	GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively	52.27%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	52.25%
Matrix_245	WRKY62; WRKY38	Not Available	52.18%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.05%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	51.96%
Matrix_422	TOE1	Not Available	51.96%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	51.94%
Matrix_432	AT1G77920	Not Available	51.83%
Matrix_271	AT3G16350	Not Available	51.60%
Matrix_277	RAP2.6	Not Available	51.57%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.57%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	51.48%
Matrix_85	SPL5	Not Available	51.46%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.45%
Matrix_1	TOE2	Not Available	51.44%
Matrix_278	AtbZIP44	Not Available	51.40%
Motif_244	ABRE-like binding site motif	Not Available	51.39%
Matrix_153	AP2	Not Available	51.38%
Matrix_38	SPL14	Not Available	51.34%
Matrix_226	GATA1	Not Available	51.31%
Matrix_240	AT4G29000	Not Available	51.28%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	51.24%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	51.24%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.20%
Matrix_171	LBD3; LBD4	Not Available	51.16%
Matrix_355	ERF10; ERF11	Not Available	51.11%
Matrix_453	EIL3	Not Available	51.09%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	51.08%
Matrix_3	WRKY48	Not Available	51.07%
Matrix_438	AtbZIP63	Not Available	51.05%
Matrix_76	GATA10	Not Available	51.00%
Matrix_431	ATHB21; HB-3	Not Available	50.90%
Matrix_341	HMGA	Not Available	50.83%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.79%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	50.79%
Matrix_220	WRKY18	Not Available	50.78%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.75%
Matrix_102	WRKY21	Not Available	50.74%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.70%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	50.69%
Motif_445	PDF2; ATML1	Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.69%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	50.69%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	50.66%
Matrix_255	cdf3	Not Available	50.56%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.54%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	50.53%
Matrix_384	ATWRKY17	Not Available	50.40%
Matrix_52	ZAT18	Not Available	50.40%
Matrix_106	AT5G47390	Not Available	50.39%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	50.38%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.36%
Motif_410	ANAERO1CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator	50.36%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	50.36%
Motif_238	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	50.31%
Matrix_25	AP3	Not Available	50.29%
Matrix_502	AT3G13040	Not Available	50.21%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	50.19%
Matrix_407	AP1	Not Available	50.18%
Motif_150	RBCSCONSENSUS	rbcS general consensus sequence; AATCCAA or AATCCAAC	50.18%
Matrix_513	SOL1; TSO1; TCX2	Not Available	50.17%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	50.14%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.10%
Matrix_396	AP3	Not Available	50.08%
Matrix_470	WRKY18	Not Available	50.05%
Matrix_433	ATERF1	Not Available	50.05%
Matrix_170	AT5G47660	Not Available	50.05%