Matrix_106 | AT5G47390 | Not Available | | 87.81% |
Matrix_271 | AT3G16350 | Not Available | | 83.51% |
Matrix_447 | RVE1 | Not Available | | 75.95% |
Matrix_336 | AT5G08520 | Not Available | | 75.44% |
Matrix_195 | GATA2; GATA4 | Not Available | | 71.16% |
Matrix_157 | LHY; RVE2 | Not Available | | 70.31% |
Matrix_226 | GATA1 | Not Available | | 70.13% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 69.88% |
Matrix_408 | GATA12 | Not Available | | 69.78% |
Matrix_230 | ARR11 | Not Available | | 67.81% |
Matrix_350 | ARR14 | Not Available | | 67.19% |
Matrix_494 | OBP4 | Not Available | | 66.56% |
Matrix_505 | GATA8 | Not Available | | 66.54% |
Matrix_9 | AT5G04760 | Not Available | | 66.41% |
Matrix_286 | GATA7 | Not Available | | 66.37% |
Matrix_502 | AT3G13040 | Not Available | | 66.33% |
Matrix_392 | ARR2 | Not Available | | 66.11% |
Matrix_471 | KAN4 | Not Available | | 64.84% |
Matrix_85 | SPL5 | Not Available | | 64.34% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 63.98% |
Matrix_204 | WOX13 | Not Available | | 63.78% |
Matrix_161 | MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570 | Not Available | | 63.32% |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | | 63.32% |
Matrix_308 | INO | Not Available | | 63.27% |
Matrix_37 | GATA27 | Not Available | | 63.19% |
Matrix_182 | ATHB6 | Not Available | | 62.10% |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 62.00% |
Matrix_434 | ARR11 | Not Available | | 61.69% |
Motif_424 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 61.26% |
Motif_15 | AMYBOX2 | amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley | | 61.18% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 60.87% |
Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | | 60.41% |
Matrix_137 | SPL1; SPL12 | Not Available | | 59.99% |
Matrix_254 | MYB52 | Not Available | | 59.98% |
Matrix_258 | WOX13 | Not Available | | 59.83% |
Motif_322 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 59.75% |
Matrix_135 | ABI3 | Not Available | | 59.24% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 59.03% |
Matrix_463 | HAT3.1 | Not Available | | 58.99% |
Matrix_504 | WRKY40 | Not Available | | 58.77% |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | | 58.76% |
Matrix_67 | GLK1 | Not Available | | 58.71% |
Matrix_489 | RAV1 | Not Available | | 58.64% |
Matrix_210 | ARR1 | Not Available | | 58.44% |
Matrix_4 | ARR14 | Not Available | | 58.41% |
Matrix_12 | EIN3; EIL2 | Not Available | | 58.37% |
Matrix_424 | MYB59 | Not Available | | 58.36% |
Matrix_203 | GATA9; GATA12 | Not Available | | 58.14% |
Matrix_38 | SPL14 | Not Available | | 58.04% |
Matrix_311 | TGA1 | Not Available | | 57.99% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 57.99% |
Matrix_348 | AT5G51910 | Not Available | | 57.88% |
Motif_222 | AGMOTIFNTMYB2 | AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site | | 57.88% |
Matrix_333 | GATA3 | Not Available | | 57.81% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 57.75% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 57.61% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 57.51% |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | | 57.47% |
Matrix_97 | APRR2 | Not Available | | 57.23% |
Matrix_366 | ARR14 | Not Available | | 57.19% |
Matrix_40 | TCP2 | Not Available | | 57.13% |
Matrix_63 | ARR10 | Not Available | | 57.03% |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | | 56.98% |
Matrix_8 | KAN1 | Not Available | | 56.88% |
Matrix_227 | AT1G64620 | Not Available | | 56.86% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 56.80% |
Motif_135 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 56.73% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 56.73% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 56.64% |
Matrix_69 | AT2G03500 | Not Available | | 56.56% |
Matrix_99 | DOF4.7 | Not Available | | 56.54% |
Matrix_79 | FUS3 | Not Available | | 56.53% |
Motif_524 | WRKY40; WRKY62; WRKY18 | Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis. Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors | | 56.43% |
Motif_557 | WRKY43; WRKY38; WRKY26 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 56.37% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 56.32% |
Matrix_361 | AT1G25550 | Not Available | | 56.24% |
Matrix_521 | AHL20 | Not Available | | 56.08% |
Matrix_128 | TGA2 | Not Available | | 56.06% |
Matrix_130 | TCP16 | Not Available | | 56.06% |
Matrix_328 | AT1G76580 | Not Available | | 55.91% |
Motif_579 | WRECSAA01 | Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts | | 55.86% |
Matrix_188 | SPL4 | Not Available | | 55.81% |
Motif_470 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 55.74% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 55.71% |
Matrix_421 | GLK1 | Not Available | | 55.67% |
Matrix_219 | AGL15 | Not Available | | 55.57% |
Matrix_324 | AT2G01060 | Not Available | | 55.50% |
Motif_121 | WRKY43; WRKY38; WRKY26 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 55.46% |
Motif_246 | LBOXLERBCS | L box; Conserved sequence found in rbcS upstream sequences of both tomato and tobacco | | 55.45% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 55.43% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 55.42% |
Motif_205 | WRKY43; WRKY38; WRKY26; WRKY11 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 55.40% |
Motif_363 | WRKY26 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 55.38% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 55.36% |
Matrix_327 | ARR11 | Not Available | | 55.36% |
Matrix_115 | AGL15 | Not Available | | 55.33% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 55.27% |
Matrix_89 | SOC1 | Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis | | 55.24% |
Motif_413 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 55.19% |
Matrix_78 | AT3G45610 | Not Available | | 55.10% |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | | 55.09% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 54.93% |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | | 54.92% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 54.92% |
Matrix_302 | HAT1; HAT2 | Not Available | | 54.91% |
Matrix_46 | AT4G21895 | Not Available | | 54.88% |
Motif_227 | WRKY43; WRKY38; WRKY26 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 54.80% |
Motif_73 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 54.66% |
Matrix_151 | ASIL1 | Not Available | | 54.64% |
Matrix_469 | NAC041; NAC083 | Not Available | | 54.61% |
Matrix_93 | YAB5 | Not Available | | 54.51% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.48% |
Matrix_84 | AtGRF6 | Not Available | | 54.44% |
Matrix_162 | AtPHR1 | Not Available | | 54.43% |
Matrix_337 | MYB46 | Not Available | | 54.39% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 54.34% |
Matrix_404 | OBP4 | Not Available | | 54.32% |
Matrix_416 | ASL5 | Not Available | | 54.31% |
Matrix_307 | RGL2; RGL3 | Not Available | | 54.28% |
Matrix_42 | AT2G45680 | Not Available | | 54.24% |
Matrix_281 | TCP13 | Not Available | | 54.21% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 54.16% |
Matrix_391 | AHL20 | Not Available | | 54.16% |
Matrix_450 | SPL7 | Not Available | | 54.10% |
Matrix_269 | FHY3/FAR1 | Not Available | | 54.09% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 54.07% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 54.03% |
Matrix_76 | GATA10 | Not Available | | 54.02% |
Matrix_71 | ATHB7 | Not Available | | 54.01% |
Matrix_80 | BIM1 | Not Available | | 53.98% |
Matrix_87 | AT1G19000 | Not Available | | 53.96% |
Matrix_425 | TIFY2A | Not Available | | 53.93% |
Matrix_224 | ERF1 | Not Available | | 53.91% |
Matrix_81 | YAB1 | Not Available | | 53.91% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 53.67% |
Matrix_279 | HRS1 | Not Available | | 53.56% |
Matrix_354 | AHL12 | Not Available | | 53.50% |
Matrix_70 | GATA26 | Not Available | | 53.48% |
Matrix_383 | CCA1 | Not Available | | 53.35% |
Matrix_420 | ANAC58 | Not Available | | 53.30% |
Matrix_387 | ORA47 | Not Available | | 53.20% |
Matrix_225 | MYB52 | Not Available | | 53.20% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 53.20% |
Matrix_212 | ATHB-12 | Not Available | | 53.15% |
Matrix_185 | AHL25 | Not Available | | 53.10% |
Matrix_141 | AT3G25990 | Not Available | | 53.09% |
Matrix_495 | HD-GL2-1; ANL2 | Not Available | | 52.97% |
Matrix_393 | REM1 | Not Available | | 52.94% |
Matrix_367 | REM1 | Not Available | | 52.81% |
Matrix_160 | RVE1 | Not Available | | 52.81% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 52.80% |
Matrix_249 | WRKY11 | Not Available | | 52.78% |
Matrix_439 | AP3 | Not Available | | 52.76% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 52.76% |
Matrix_218 | TIFY2B; TIFY1 | Not Available | | 52.75% |
Matrix_3 | WRKY48 | Not Available | | 52.71% |
Matrix_507 | TCP3 | Not Available | | 52.69% |
Matrix_379 | RHL41 | Not Available | | 52.61% |
Matrix_166 | TGA4 | Not Available | | 52.58% |
Matrix_315 | MYB111 | Not Available | | 52.57% |
Matrix_435 | ATHB51 | Not Available | | 52.51% |
Matrix_253 | ETT | Not Available | | 52.50% |
Matrix_248 | ZFP5 | Not Available | | 52.46% |
Matrix_221 | SPL7 | Not Available | | 52.34% |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | | 52.33% |
Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 52.24% |
Matrix_75 | WRKY29 | Not Available | | 52.24% |
Matrix_237 | MYB55 | Not Available | | 52.21% |
Matrix_112 | TBP2; TFIID-1 | Not Available | | 52.19% |
Matrix_355 | ERF10; ERF11 | Not Available | | 52.13% |
Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 52.08% |
Matrix_109 | GBF3 | Not Available | | 52.02% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 52.02% |
Matrix_522 | GATA11; GATA13 | Not Available | | 51.97% |
Matrix_500 | WRKY43 | Not Available | | 51.93% |
Motif_518 | SPHCOREZMC1 | Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response | | 51.92% |
Matrix_296 | GBF2 | Not Available | | 51.91% |
Matrix_382 | AT3G04850 | Not Available | | 51.87% |
Matrix_41 | anac058 | Not Available | | 51.83% |
Matrix_352 | LEC2 | Not Available | | 51.80% |
Matrix_427 | ZAT14 | Not Available | | 51.77% |
Matrix_177 | ADOF2 | Not Available | | 51.76% |
Motif_683 | AtMYB2 BS in RD22 | Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression | | 51.67% |
Matrix_288 | RAP2.3 | Not Available | | 51.66% |
Motif_132 | PIATGAPB | PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | | 51.64% |
Matrix_509 | LEC2 | Not Available | | 51.55% |
Matrix_126 | RBE | Not Available | | 51.55% |
Motif_674 | SPL4; SPL1; SPL5 | Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 51.55% |
Matrix_432 | AT1G77920 | Not Available | | 51.53% |
Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 51.44% |
Matrix_329 | WRKY12 | Not Available | | 51.40% |
Matrix_461 | ATHB12 | Not Available | | 51.38% |
Matrix_239 | AT5G04390 | Not Available | | 51.34% |
Matrix_415 | WRKY27 | Not Available | | 51.30% |
Matrix_512 | HAT3 | Not Available | | 51.28% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 51.08% |
Matrix_31 | SPL1 | Not Available | | 51.06% |
Motif_337 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 51.06% |
Matrix_72 | CDF2 | Not Available | | 51.01% |
Motif_423 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.96% |
Matrix_181 | Dof5.7 | Not Available | | 50.94% |
Matrix_94 | TCP5 | Not Available | | 50.86% |
Matrix_293 | WRKY38 | Not Available | | 50.80% |
Motif_161 | SPL7; SPL4 | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 50.78% |
Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 50.67% |
Motif_596 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.64% |
Motif_386 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.64% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 50.61% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 50.59% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 50.59% |
Matrix_17 | WRKY22 | Not Available | | 50.56% |
Matrix_299 | PFG3 | Not Available | | 50.56% |
Matrix_341 | HMGA | Not Available | | 50.55% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 50.52% |
Motif_296 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.50% |
Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | | 50.49% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 50.46% |
Matrix_363 | RAP2.3 | Not Available | | 50.45% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 50.45% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 50.43% |
Matrix_274 | EDF3 | Not Available | | 50.41% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 50.33% |
Matrix_101 | ERF5 | Not Available | | 50.31% |
Motif_468 | WRKY43; WRKY38; WRKY26 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.21% |
Matrix_193 | RAV1 | Not Available | | 50.20% |
Matrix_265 | NGA3 | Not Available | | 50.20% |
Motif_461 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 50.19% |
Matrix_23 | ANAC46 | Not Available | | 50.13% |
Matrix_430 | TOE2 | Not Available | | 50.11% |
Matrix_142 | ZFP8 | Not Available | | 50.10% |
Matrix_35 | YAB5; YAB3 | Not Available | | 50.08% |
Matrix_513 | SOL1; TSO1; TCX2 | Not Available | | 50.07% |