Matrix_32 | AHL25 | Not Available | | 89.43% |
Matrix_168 | AHL25 | Not Available | | 83.98% |
Matrix_88 | AHL12 | Not Available | | 79.22% |
Matrix_125 | AHL12 | Not Available | | 78.98% |
Matrix_521 | AHL20 | Not Available | | 77.90% |
Matrix_185 | AHL25 | Not Available | | 77.10% |
Matrix_391 | AHL20 | Not Available | | 74.90% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 74.64% |
Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 74.01% |
Matrix_382 | AT3G04850 | Not Available | | 71.56% |
Matrix_212 | ATHB-12 | Not Available | | 68.85% |
Matrix_240 | AT4G29000 | Not Available | | 68.37% |
Matrix_81 | YAB1 | Not Available | | 65.95% |
Matrix_93 | YAB5 | Not Available | | 65.66% |
Matrix_495 | HD-GL2-1; ANL2 | Not Available | | 65.41% |
Matrix_103 | ATHB1 | The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 65.37% |
Matrix_341 | HMGA | Not Available | | 65.34% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 64.90% |
Matrix_435 | ATHB51 | Not Available | | 64.85% |
Matrix_17 | WRKY22 | Not Available | | 64.79% |
Matrix_442 | AT5G62260 | Not Available | | 64.20% |
Matrix_12 | EIN3; EIL2 | Not Available | | 63.66% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 63.65% |
Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 63.56% |
Matrix_249 | WRKY11 | Not Available | | 63.56% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 63.48% |
Matrix_500 | WRKY43 | Not Available | | 63.37% |
Matrix_441 | ATHB5 | Not Available | | 62.93% |
Matrix_483 | ICU4 | Not Available | | 62.76% |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | | 62.60% |
Matrix_427 | ZAT14 | Not Available | | 62.52% |
Matrix_308 | INO | Not Available | | 62.17% |
Matrix_75 | WRKY29 | Not Available | | 62.04% |
Matrix_99 | DOF4.7 | Not Available | | 61.91% |
Matrix_384 | ATWRKY17 | Not Available | | 61.82% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 61.77% |
Matrix_318 | ATHB16 | Not Available | | 61.75% |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 61.70% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 61.25% |
Matrix_62 | HAT5 | Not Available | | 60.52% |
Matrix_461 | ATHB12 | Not Available | | 60.38% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 60.25% |
Matrix_46 | AT4G21895 | Not Available | | 60.25% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 60.20% |
Matrix_328 | AT1G76580 | Not Available | | 59.87% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 59.67% |
Matrix_182 | ATHB6 | Not Available | | 59.66% |
Matrix_160 | RVE1 | Not Available | | 59.34% |
Matrix_383 | CCA1 | Not Available | | 59.23% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 59.21% |
Motif_277 | ATHB1 binding site motif | Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 59.15% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 59.10% |
Matrix_157 | LHY; RVE2 | Not Available | | 58.83% |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 58.81% |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | | 58.80% |
Matrix_52 | ZAT18 | Not Available | | 58.72% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 58.59% |
Matrix_142 | ZFP8 | Not Available | | 58.37% |
Matrix_447 | RVE1 | Not Available | | 58.14% |
Matrix_3 | WRKY48 | Not Available | | 58.13% |
Matrix_70 | GATA26 | Not Available | | 58.12% |
Matrix_354 | AHL12 | Not Available | | 57.99% |
Matrix_434 | ARR11 | Not Available | | 57.66% |
Matrix_71 | ATHB7 | Not Available | | 57.59% |
Matrix_97 | APRR2 | Not Available | | 57.51% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 57.47% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 57.46% |
Matrix_333 | GATA3 | Not Available | | 57.39% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 57.38% |
Motif_352 | ATHB5 binding site motif | Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | | 57.36% |
Matrix_102 | WRKY21 | Not Available | | 57.34% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 57.32% |
Matrix_453 | EIL3 | Not Available | | 57.29% |
Matrix_262 | ATGRP2B; CSDP2 | Not Available | | 57.12% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 56.53% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 56.52% |
Matrix_197 | NAP | Not Available | | 56.49% |
Matrix_302 | HAT1; HAT2 | Not Available | | 56.45% |
Matrix_227 | AT1G64620 | Not Available | | 56.45% |
Matrix_415 | WRKY27 | Not Available | | 56.44% |
Matrix_8 | KAN1 | Not Available | | 56.28% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 56.28% |
Matrix_72 | CDF2 | Not Available | | 56.21% |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 55.91% |
Motif_660 | GT-3b | Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor | | 55.67% |
Matrix_181 | Dof5.7 | Not Available | | 55.67% |
Matrix_286 | GATA7 | Not Available | | 55.60% |
Matrix_151 | ASIL1 | Not Available | | 55.53% |
Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 55.42% |
Matrix_163 | AT2G20110 | Not Available | | 55.39% |
Motif_491 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 55.37% |
Matrix_4 | ARR14 | Not Available | | 55.27% |
Matrix_162 | AtPHR1 | Not Available | | 55.26% |
Matrix_141 | AT3G25990 | Not Available | | 55.20% |
Matrix_69 | AT2G03500 | Not Available | | 54.90% |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | | 54.85% |
Matrix_430 | TOE2 | Not Available | | 54.79% |
Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 54.73% |
Matrix_177 | ADOF2 | Not Available | | 54.68% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 54.68% |
Matrix_53 | MYC3 | Not Available | | 54.68% |
Matrix_416 | ASL5 | Not Available | | 54.66% |
Matrix_210 | ARR1 | Not Available | | 54.62% |
Matrix_236 | CCA1 | Not Available | | 54.61% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 54.58% |
Matrix_513 | SOL1; TSO1; TCX2 | Not Available | | 54.52% |
Matrix_9 | AT5G04760 | Not Available | | 54.40% |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | | 54.40% |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | | 54.36% |
Matrix_220 | WRKY18 | Not Available | | 54.24% |
Motif_169 | ATHB2 binding site motif | Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 54.19% |
Matrix_293 | WRKY38 | Not Available | | 54.18% |
Matrix_51 | LFY | Not Available | | 54.09% |
Matrix_411 | DOF5.6 | Not Available | | 54.04% |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | | 54.03% |
Matrix_410 | TOE2 | Not Available | | 54.01% |
Matrix_380 | ATMYR1 | Not Available | | 53.99% |
Matrix_376 | WRKY45 | Not Available | | 53.96% |
Matrix_205 | AGL15 | Not Available | | 53.88% |
Matrix_489 | RAV1 | Not Available | | 53.87% |
Matrix_254 | MYB52 | Not Available | | 53.77% |
Motif_298 | GMHDLGMVSPB | Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein | | 53.75% |
Matrix_361 | AT1G25550 | Not Available | | 53.64% |
Matrix_100 | AT1G48610 | Not Available | | 53.62% |
Matrix_523 | FUSCA3 | Not Available | | 53.62% |
Matrix_494 | OBP4 | Not Available | | 53.52% |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 53.47% |
Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 53.35% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 53.24% |
Matrix_336 | AT5G08520 | Not Available | | 53.23% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 53.22% |
Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 53.05% |
Matrix_501 | DAG2 | Not Available | | 53.03% |
Matrix_248 | ZFP5 | Not Available | | 52.96% |
Matrix_324 | AT2G01060 | Not Available | | 52.92% |
Matrix_329 | WRKY12 | Not Available | | 52.91% |
Matrix_402 | TOE1 | Not Available | | 52.87% |
Matrix_479 | TOE1 | Not Available | | 52.75% |
Matrix_87 | AT1G19000 | Not Available | | 52.68% |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | | 52.54% |
Matrix_37 | GATA27 | Not Available | | 52.53% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 52.52% |
Matrix_311 | TGA1 | Not Available | | 52.11% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 52.02% |
Matrix_78 | AT3G45610 | Not Available | | 51.77% |
Matrix_175 | Dof5.7 | Not Available | | 51.73% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 51.65% |
Matrix_226 | GATA1 | Not Available | | 51.59% |
Matrix_255 | cdf3 | Not Available | | 51.52% |
Matrix_423 | AT3G04030 | Not Available | | 51.48% |
Motif_198 | CARGATCONSENSUS | CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO) | | 51.46% |
Motif_260 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 51.38% |
Motif_123 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 51.36% |
Matrix_112 | TBP2; TFIID-1 | Not Available | | 51.25% |
Motif_71 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 51.08% |
Matrix_84 | AtGRF6 | Not Available | | 51.00% |
Matrix_487 | AT1G29160 | Not Available | | 50.96% |
Matrix_504 | WRKY40 | Not Available | | 50.94% |
Matrix_271 | AT3G16350 | Not Available | | 50.94% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 50.93% |
Matrix_96 | TMO6 | Not Available | | 50.93% |
Motif_246 | LBOXLERBCS | L box; Conserved sequence found in rbcS upstream sequences of both tomato and tobacco | | 50.89% |
Matrix_204 | WOX13 | Not Available | | 50.77% |
Matrix_397 | GT2L | Not Available | | 50.72% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 50.68% |
Motif_284 | GT-2 | DNA binding factor GT-2 from Arabidopsis | | 50.60% |
Matrix_452 | MYB46 | Not Available | | 50.56% |
Matrix_38 | SPL14 | Not Available | | 50.56% |
Motif_556 | INTRONUPPER | 5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns | | 50.52% |
Matrix_519 | ATDOF2.4 | Not Available | | 50.47% |
Motif_76 | SURE1STPAT21 | Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | | 50.46% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 50.46% |
Motif_178 | MRNA3ENDTAH3 | Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast | | 50.45% |
Matrix_237 | MYB55 | Not Available | | 50.39% |
Motif_373 | TATABOX1 | TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 50.37% |
Matrix_457 | TGA2 | Not Available | | 50.31% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 50.24% |
Matrix_470 | WRKY18 | Not Available | | 50.19% |
Matrix_193 | RAV1 | Not Available | | 50.09% |
Matrix_265 | NGA3 | Not Available | | 50.09% |
Motif_675 | FUS3; ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 50.08% |
Matrix_424 | MYB59 | Not Available | | 50.04% |