PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_523
Name: FUSCA3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_205	AGL15	Not Available	98.85%
Matrix_51	LFY	Not Available	96.92%
Matrix_29	AP1	Not Available	75.30%
Matrix_391	AHL20	Not Available	69.66%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	68.07%
Matrix_444	AT1G19485; AT4G17950	Not Available	66.37%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	66.02%
Motif_187	AT1BOX	AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element	65.99%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	65.63%
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	63.93%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	63.61%
Matrix_383	CCA1	Not Available	63.56%
Matrix_160	RVE1	Not Available	62.75%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	62.17%
Matrix_434	ARR11	Not Available	61.87%
Matrix_81	YAB1	Not Available	61.76%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	61.67%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	61.37%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	61.37%
Matrix_54	AHL20	Not Available	61.35%
Matrix_204	WOX13	Not Available	61.03%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	60.75%
Matrix_240	AT4G29000	Not Available	60.59%
Matrix_435	ATHB51	Not Available	60.56%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	60.38%
Motif_126	5256BOXLELAT5256	52/56 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)52 and LAT56 promoters; Encompassing PB core motif (TGTGGTT), and is closely related to the box II sequence motif in the pea rbcS-3A gene promoter; Involved in modulating the activity of the LAT gene promoters in pollen; Dispensable for the developmental regulation of the LAT52 gene in pollen; 52/56 box may be a target for the binding of a member of the GT-1 transcription factor family	60.33%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	60.24%
Matrix_412	GL1	Not Available	60.09%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	59.94%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	59.53%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	59.42%
Matrix_236	CCA1	Not Available	59.37%
Matrix_431	ATHB21; HB-3	Not Available	59.33%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	59.29%
Matrix_453	EIL3	Not Available	59.29%
Matrix_521	AHL20	Not Available	59.28%
Matrix_483	ICU4	Not Available	59.03%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	58.81%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	58.63%
Matrix_185	AHL25	Not Available	58.50%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	58.33%
Matrix_203	GATA9; GATA12	Not Available	58.18%
Matrix_354	AHL12	Not Available	58.12%
Matrix_407	AP1	Not Available	57.98%
Matrix_318	ATHB16	Not Available	57.83%
Matrix_182	ATHB6	Not Available	57.79%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	57.72%
Matrix_25	AP3	Not Available	57.51%
Motif_240	IBOXLSCMCUCUMISIN	I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element	57.50%
Matrix_62	HAT5	Not Available	57.42%
Matrix_447	RVE1	Not Available	57.35%
Matrix_219	AGL15	Not Available	56.97%
Matrix_125	AHL12	Not Available	56.91%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	56.68%
Matrix_479	TOE1	Not Available	56.64%
Matrix_114	EPR1; AT3G10113	Not Available	56.49%
Matrix_441	ATHB5	Not Available	56.21%
Matrix_168	AHL25	Not Available	56.14%
Matrix_88	AHL12	Not Available	56.05%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	55.77%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	55.77%
Matrix_495	HD-GL2-1; ANL2	Not Available	55.61%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	55.60%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	55.58%
Matrix_382	AT3G04850	Not Available	55.53%
Matrix_9	AT5G04760	Not Available	55.48%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	55.43%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	55.43%
Matrix_32	AHL25	Not Available	55.36%
Motif_5	SORLREP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.35%
Matrix_157	LHY; RVE2	Not Available	55.34%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	55.28%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	55.28%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.28%
Matrix_471	KAN4	Not Available	55.24%
Matrix_340	HSFC1	Not Available	55.08%
Matrix_302	HAT1; HAT2	Not Available	55.03%
Matrix_366	ARR14	Not Available	55.00%
Matrix_6	AT1G70000	Not Available	54.99%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	54.98%
Matrix_258	WOX13	Not Available	54.87%
Matrix_430	TOE2	Not Available	54.77%
Matrix_213	ATHB22	Not Available	54.66%
Matrix_461	ATHB12	Not Available	54.61%
Matrix_13	HAT5	Not Available	54.52%
Matrix_439	AP3	Not Available	54.52%
Matrix_8	KAN1	Not Available	54.41%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.92%
Matrix_392	ARR2	Not Available	53.89%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	53.57%
Matrix_93	YAB5	Not Available	53.50%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.46%
Motif_537	CONSERVED11NTZMATP1	Conserved 11 nt sequence found in the maize mitochondrial atp1 promoter; Located between -5 and +6; Essential for the expression	53.42%
Matrix_262	ATGRP2B; CSDP2	Not Available	53.29%
Matrix_347	WOX14; WOX10	Not Available	53.22%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.18%
Matrix_71	ATHB7	Not Available	53.16%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	53.12%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	53.09%
Matrix_499	ARR18	Not Available	53.04%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	53.04%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.02%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	52.93%
Matrix_87	AT1G19000	Not Available	52.93%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	52.88%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	52.88%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.84%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	52.78%
Matrix_408	GATA12	Not Available	52.73%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.70%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	52.70%
Matrix_67	GLK1	Not Available	52.57%
Matrix_424	MYB59	Not Available	52.48%
Matrix_163	AT2G20110	Not Available	52.46%
Matrix_72	CDF2	Not Available	52.45%
Matrix_201	AT1G74840	Not Available	52.41%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.41%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.40%
Matrix_211	MYB3	Not Available	52.38%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.36%
Matrix_324	AT2G01060	Not Available	52.31%
Matrix_106	AT5G47390	Not Available	52.28%
Matrix_97	APRR2	Not Available	52.27%
Matrix_502	AT3G13040	Not Available	52.18%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	52.05%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	52.03%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	52.00%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	51.99%
Matrix_361	AT1G25550	Not Available	51.98%
Matrix_271	AT3G16350	Not Available	51.91%
Matrix_327	ARR11	Not Available	51.87%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.72%
Matrix_16	AT3G04450; PHL1	Not Available	51.62%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	51.60%
Matrix_175	Dof5.7	Not Available	51.45%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.35%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.35%
Matrix_494	OBP4	Not Available	51.32%
Matrix_273	ANAC55	Not Available	51.32%
Matrix_227	AT1G64620	Not Available	51.27%
Matrix_4	ARR14	Not Available	51.21%
Matrix_429	KAN4	Not Available	51.18%
Matrix_469	NAC041; NAC083	Not Available	51.12%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	51.08%
Motif_578	BBOXSITE1STPAT	10 base pair motif (site 1) within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato	51.02%
Matrix_303	ATWOX13	Not Available	50.99%
Matrix_132	SOC1	Not Available	50.98%
Matrix_210	ARR1	Not Available	50.95%
Matrix_116	ANAC55	Not Available	50.91%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.90%
Matrix_333	GATA3	Not Available	50.85%
Matrix_12	EIN3; EIL2	Not Available	50.76%
Matrix_162	AtPHR1	Not Available	50.72%
Matrix_413	RAV1	Not Available	50.60%
Matrix_298	RAV1	Not Available	50.60%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.60%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	50.35%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	50.34%
Motif_601	D3GMAUX28	D3; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -750 and -760; A/T-rich sequence	50.30%
Matrix_167	ZAT6	Not Available	50.26%
Matrix_396	AP3	Not Available	50.14%
Matrix_442	AT5G62260	Not Available	50.13%
Matrix_226	GATA1	Not Available	50.06%