PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_522
Name: GATA11; GATA13
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_76	GATA10	Not Available	95.16%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	72.39%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	65.67%
Matrix_218	TIFY2B; TIFY1	Not Available	65.24%
Matrix_505	GATA8	Not Available	64.62%
Matrix_425	TIFY2A	Not Available	63.47%
Matrix_366	ARR14	Not Available	61.99%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	61.26%
Motif_104	CAREOSREP1	CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice	61.25%
Matrix_279	HRS1	Not Available	60.32%
Matrix_157	LHY; RVE2	Not Available	60.32%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	60.18%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	59.74%
Motif_336	MYBMOUSE	Binding site for mouse c-myb protein	59.66%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	58.53%
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	58.26%
Matrix_67	GLK1	Not Available	57.82%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	56.68%
Matrix_63	ARR10	Not Available	56.67%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	56.59%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	56.30%
Motif_584	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	55.93%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	55.44%
Motif_210	REBETALGLHCB21	REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation	55.37%
Motif_559	RAV1-A binding site motif; RAV1AAT	Binding consensus sequence of Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	55.36%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	55.24%
Matrix_434	ARR11	Not Available	55.19%
Matrix_318	ATHB16	Not Available	54.95%
Matrix_203	GATA9; GATA12	Not Available	54.66%
Motif_630	WBOXNTCHN48	W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco	54.27%
Matrix_392	ARR2	Not Available	54.24%
Motif_182	MYB2CONSENSUSAT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22	54.24%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	54.16%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	54.14%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	54.13%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	53.91%
Motif_365	ARF1 binding site motif	ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors	53.86%
Matrix_303	ATWOX13	Not Available	53.71%
Matrix_408	GATA12	Not Available	53.38%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	53.02%
Matrix_347	WOX14; WOX10	Not Available	52.96%
Motif_88	MYB2AT	Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis	52.86%
Matrix_336	AT5G08520	Not Available	52.60%
Motif_369	SURECOREATSULTR11	Core of sulfur-responsive element (SURE) found in the promoter of SULTR1;1 high-affinity sulfate transporter gene in Arabidopsis; SURE contains auxin response factor (ARF) binding sequence (GAGACA)(see S000270 ARF:TGTCTC; its complementary seq is GAGACA), and this core sequence is a part of it; this core seq is involved in -S response; Beware of other SURE (sucrose responsive element)	52.55%
Matrix_37	GATA27	Not Available	52.51%
Matrix_324	AT2G01060	Not Available	52.47%
Matrix_520	ARR14	Not Available	52.34%
Matrix_361	AT1G25550	Not Available	52.33%
Matrix_379	RHL41	Not Available	52.16%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.11%
Matrix_512	HAT3	Not Available	51.91%
Matrix_504	WRKY40	Not Available	51.88%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.64%
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	51.63%
Matrix_126	RBE	Not Available	51.32%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	51.32%
Matrix_436	AT3G49930; AZF1	Not Available	51.31%
Matrix_503	AT2G37430; AT3G53600	Not Available	51.28%
Matrix_421	GLK1	Not Available	50.75%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	50.69%
Motif_196	WBOXHVISO1	SUSIBA2 bind to W-box element in barley iso1 (encoding isoamylase1) promoter	50.68%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	50.55%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	50.54%
Matrix_239	AT5G04390	Not Available	50.27%