PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_512
Name: HAT3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_347	WOX14; WOX10	Not Available	83.21%
Matrix_303	ATWOX13	Not Available	80.20%
Matrix_182	ATHB6	Not Available	74.82%
Matrix_425	TIFY2A	Not Available	70.04%
Matrix_218	TIFY2B; TIFY1	Not Available	68.87%
Matrix_165	KNAT1	Not Available	67.06%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	66.99%
Matrix_505	GATA8	Not Available	65.06%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	64.51%
Matrix_78	AT3G45610	Not Available	63.80%
Matrix_37	GATA27	Not Available	63.39%
Matrix_302	HAT1; HAT2	Not Available	62.93%
Matrix_274	EDF3	Not Available	61.81%
Matrix_461	ATHB12	Not Available	61.59%
Matrix_177	ADOF2	Not Available	61.21%
Matrix_152	EIL1; AT5G65100	Not Available	61.18%
Matrix_126	RBE	Not Available	60.76%
Matrix_35	YAB5; YAB3	Not Available	60.09%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	59.86%
Matrix_243	RAP2.12; RAP2.2	Not Available	59.59%
Matrix_198	STZ; C2H2; AZF3	Not Available	59.33%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	59.17%
Matrix_71	ATHB7	Not Available	58.76%
Matrix_516	ANAC038; ANAC079	Not Available	58.55%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	58.31%
Matrix_239	AT5G04390	Not Available	58.05%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	58.03%
Matrix_503	AT2G37430; AT3G53600	Not Available	57.60%
Matrix_379	RHL41	Not Available	57.45%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	57.40%
Matrix_411	DOF5.6	Not Available	57.39%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	57.15%
Matrix_279	HRS1	Not Available	56.99%
Matrix_195	GATA2; GATA4	Not Available	56.74%
Matrix_408	GATA12	Not Available	56.66%
Matrix_436	AT3G49930; AZF1	Not Available	56.40%
Matrix_93	YAB5	Not Available	56.40%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	56.27%
Matrix_112	TBP2; TFIID-1	Not Available	56.21%
Matrix_519	ATDOF2.4	Not Available	55.98%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.54%
Matrix_84	AtGRF6	Not Available	55.48%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	55.46%
Matrix_100	AT1G48610	Not Available	55.02%
Matrix_204	WOX13	Not Available	55.00%
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	54.79%
Matrix_226	GATA1	Not Available	54.76%
Motif_530	CPBCSPOR	The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene	54.70%
Matrix_248	ZFP5	Not Available	54.66%
Matrix_62	HAT5	Not Available	54.51%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	54.37%
Matrix_336	AT5G08520	Not Available	54.20%
Matrix_318	ATHB16	Not Available	54.14%
Matrix_137	SPL1; SPL12	Not Available	54.12%
Matrix_14	ZCW32; AT5G62610	Not Available	54.08%
Matrix_434	ARR11	Not Available	53.81%
Matrix_85	SPL5	Not Available	53.78%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	53.67%
Matrix_87	AT1G19000	Not Available	53.65%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	53.57%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	53.29%
Matrix_67	GLK1	Not Available	53.28%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	53.20%
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	53.16%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	53.11%
Matrix_114	EPR1; AT3G10113	Not Available	52.88%
Matrix_236	CCA1	Not Available	52.81%
Matrix_286	GATA7	Not Available	52.65%
Motif_332	SV40COREENHAN	SV40 core enhancer; Similar sequences found in rbcS genes	52.64%
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	52.63%
Matrix_76	GATA10	Not Available	52.62%
Matrix_435	ATHB51	Not Available	52.62%
Matrix_225	MYB52	Not Available	52.35%
Matrix_27	ATAIB; ATNIG1	Not Available	52.30%
Matrix_143	GATA14; GATA6; GATA5	Not Available	52.25%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	52.19%
Matrix_96	TMO6	Not Available	52.05%
Matrix_522	GATA11; GATA13	Not Available	51.91%
Matrix_504	WRKY40	Not Available	51.88%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	51.85%
Matrix_423	AT3G04030	Not Available	51.62%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	51.57%
Matrix_502	AT3G13040	Not Available	51.55%
Matrix_230	ARR11	Not Available	51.41%
Matrix_334	AT3G23230	Not Available	51.30%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.23%
Matrix_38	SPL14	Not Available	51.18%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.12%
Matrix_333	GATA3	Not Available	50.72%
Matrix_46	AT4G21895	Not Available	50.67%
Matrix_282	bZIP60	Not Available	50.28%
Matrix_70	GATA26	Not Available	50.23%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	50.19%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	50.19%
Matrix_418	KNAT6; KNAT2	Not Available	50.18%
Matrix_99	DOF4.7	Not Available	50.18%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	50.18%
Matrix_157	LHY; RVE2	Not Available	50.12%
Matrix_442	AT5G62260	Not Available	50.11%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	50.03%