PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_507
Name: TCP3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_297	TCP15	Not Available	79.54%
Matrix_216	TCP16	Not Available	79.07%
Matrix_232	TCP23	Not Available	77.60%
Matrix_144	AT5G08330; AT5G23280	Not Available	73.23%
Matrix_281	TCP13	Not Available	70.86%
Matrix_102	WRKY21	Not Available	70.55%
Matrix_348	AT5G51910	Not Available	69.92%
Matrix_3	WRKY48	Not Available	69.73%
Matrix_370	WRKY50; WRKY51	Not Available	69.55%
Matrix_40	TCP2	Not Available	69.33%
Matrix_294	MEE35	Not Available	69.21%
Matrix_463	HAT3.1	Not Available	69.14%
Matrix_42	AT2G45680	Not Available	68.80%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	68.70%
Matrix_384	ATWRKY17	Not Available	68.63%
Matrix_101	ERF5	Not Available	68.56%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	68.36%
Matrix_418	KNAT6; KNAT2	Not Available	68.11%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	67.71%
Matrix_17	WRKY22	Not Available	67.66%
Matrix_75	WRKY29	Not Available	67.56%
Matrix_94	TCP5	Not Available	67.35%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	67.32%
Matrix_287	ERF2	Not Available	67.31%
Matrix_450	SPL7	Not Available	66.80%
Matrix_220	WRKY18	Not Available	66.39%
Matrix_169	E2F1	Not Available	66.32%
Matrix_502	AT3G13040	Not Available	66.28%
Matrix_82	TCP17	Not Available	66.09%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	65.56%
Matrix_196	TCP20; AT5G41030	Not Available	65.19%
Matrix_290	AP2	Not Available	65.12%
Matrix_197	NAP	Not Available	65.00%
Matrix_470	WRKY18	Not Available	64.75%
Matrix_130	TCP16	Not Available	64.69%
Matrix_415	WRKY27	Not Available	64.55%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	64.26%
Matrix_362	DEAR3	Not Available	63.89%
Matrix_261	ATERF-1	Not Available	63.52%
Matrix_226	GATA1	Not Available	63.28%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	63.15%
Matrix_195	GATA2; GATA4	Not Available	62.92%
Matrix_321	HRD	Not Available	62.83%
Matrix_190	ATERF1	Not Available	62.71%
Matrix_59	AT4G00238; AT4G00250	Not Available	62.52%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	62.45%
Matrix_374	AT5G07580; AT5G61590	Not Available	62.33%
Matrix_343	AT2G33710	Not Available	62.29%
Matrix_221	SPL7	Not Available	62.10%
Matrix_128	TGA2	Not Available	62.00%
Matrix_328	AT1G76580	Not Available	61.85%
Matrix_311	TGA1	Not Available	61.65%
Matrix_405	DREB2C	Not Available	61.53%
Matrix_241	HB-1; AT5G44180	Not Available	61.40%
Matrix_504	WRKY40	Not Available	61.30%
Matrix_91	CRF3	Not Available	61.25%
Matrix_408	GATA12	Not Available	61.24%
Matrix_286	GATA7	Not Available	61.22%
Matrix_85	SPL5	Not Available	60.95%
Matrix_188	SPL4	Not Available	60.92%
Matrix_230	ARR11	Not Available	60.90%
Matrix_69	AT2G03500	Not Available	60.84%
Matrix_234	RAP2.3	Not Available	60.83%
Matrix_37	GATA27	Not Available	60.83%
Matrix_110	ATABI4; AT3G57600	Not Available	60.74%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	60.40%
Matrix_146	ORA47	Not Available	60.39%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	60.34%
Matrix_334	AT3G23230	Not Available	60.19%
Matrix_162	AtPHR1	Not Available	60.07%
Matrix_491	AT1G68670; AT3G25790	Not Available	60.03%
Matrix_143	GATA14; GATA6; GATA5	Not Available	59.99%
Matrix_70	GATA26	Not Available	59.84%
Matrix_209	RAP2.6	Not Available	59.84%
Matrix_148	WRKY60	Not Available	59.83%
Matrix_333	GATA3	Not Available	59.79%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	59.72%
Matrix_423	AT3G04030	Not Available	59.67%
Matrix_142	ZFP8	Not Available	59.54%
Matrix_432	AT1G77920	Not Available	59.47%
Matrix_350	ARR14	Not Available	59.46%
Matrix_12	EIN3; EIL2	Not Available	59.03%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	58.95%
Matrix_271	AT3G16350	Not Available	58.66%
Matrix_493	AT1G22985; AT1G71130	Not Available	58.63%
Matrix_248	ZFP5	Not Available	58.50%
Matrix_152	EIL1; AT5G65100	Not Available	58.35%
Matrix_452	MYB46	Not Available	58.26%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	58.24%
Matrix_38	SPL14	Not Available	58.20%
Matrix_308	INO	Not Available	58.11%
Matrix_16	AT3G04450; PHL1	Not Available	57.91%
Matrix_355	ERF10; ERF11	Not Available	57.85%
Matrix_80	BIM1	Not Available	57.79%
Matrix_109	GBF3	Not Available	57.79%
Matrix_506	DRNL; ATERF-4	Not Available	57.72%
Matrix_272	DEAR4	Not Available	57.70%
Matrix_336	AT5G08520	Not Available	57.66%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	57.63%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	57.58%
Matrix_406	ATERF-7	Not Available	57.56%
Matrix_361	AT1G25550	Not Available	57.56%
Matrix_243	RAP2.12; RAP2.2	Not Available	57.31%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	57.25%
Matrix_165	KNAT1	Not Available	57.22%
Matrix_277	RAP2.6	Not Available	57.06%
Matrix_392	ARR2	Not Available	57.01%
Matrix_86	CRF5; CRF6; CRF4	Not Available	56.91%
Matrix_416	ASL5	Not Available	56.84%
Matrix_324	AT2G01060	Not Available	56.82%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	56.80%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	56.79%
Matrix_97	APRR2	Not Available	56.78%
Matrix_447	RVE1	Not Available	56.74%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.66%
Matrix_505	GATA8	Not Available	56.66%
Matrix_373	E2FE	Not Available	56.66%
Matrix_206	CUC1; ANAC100	Not Available	56.56%
Matrix_331	GBF1	Not Available	56.55%
Matrix_341	HMGA	Not Available	56.51%
Matrix_489	RAV1	Not Available	56.48%
Matrix_482	AT2G25650; AT4G00270	Not Available	56.43%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	56.39%
Matrix_322	NST3; ANAC015; BRN2	Not Available	56.39%
Matrix_259	AT1G50680; AT1G51120	Not Available	56.30%
Matrix_420	ANAC58	Not Available	56.26%
Matrix_473	RRTF1	Not Available	56.23%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	56.19%
Matrix_462	ATERF-8	Not Available	56.05%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	56.03%
Matrix_426	CRF1; CRF2	Not Available	55.99%
Matrix_378	ATERF1	Not Available	55.99%
Matrix_421	GLK1	Not Available	55.92%
Matrix_50	ATERF14; AT5G43410	Not Available	55.88%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	55.78%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	55.72%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	55.69%
Matrix_500	WRKY43	Not Available	55.62%
Matrix_453	EIL3	Not Available	55.60%
Matrix_141	AT3G25990	Not Available	55.56%
Matrix_57	WIN1; SHN3; SHN2	Not Available	55.47%
Matrix_307	RGL2; RGL3	Not Available	55.28%
Matrix_387	ORA47	Not Available	55.21%
Matrix_151	ASIL1	Not Available	55.10%
Matrix_289	WRKY25	Not Available	55.10%
Matrix_249	WRKY11	Not Available	55.09%
Matrix_67	GLK1	Not Available	54.82%
Matrix_434	ARR11	Not Available	54.79%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	54.71%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	54.66%
Matrix_99	DOF4.7	Not Available	54.66%
Matrix_84	AtGRF6	Not Available	54.62%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	54.61%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.58%
Matrix_252	RAP2.6	Not Available	54.58%
Matrix_380	ATMYR1	Not Available	54.48%
Matrix_494	OBP4	Not Available	54.42%
Matrix_201	AT1G74840	Not Available	54.38%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	54.21%
Matrix_227	AT1G64620	Not Available	54.18%
Matrix_171	LBD3; LBD4	Not Available	54.15%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.04%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	53.87%
Matrix_285	DDF1	Not Available	53.83%
Matrix_78	AT3G45610	Not Available	53.82%
Matrix_53	MYC3	Not Available	53.52%
Matrix_412	GL1	Not Available	53.50%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	53.50%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	53.46%
Matrix_137	SPL1; SPL12	Not Available	53.33%
Matrix_52	ZAT18	Not Available	53.22%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	53.17%
Matrix_41	anac058	Not Available	53.15%
Matrix_363	RAP2.3	Not Available	53.14%
Matrix_409	DEAR3	Not Available	53.08%
Matrix_203	GATA9; GATA12	Not Available	53.08%
Matrix_166	TGA4	Not Available	52.90%
Matrix_457	TGA2	Not Available	52.89%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.84%
Matrix_46	AT4G21895	Not Available	52.83%
Matrix_6	AT1G70000	Not Available	52.69%
Matrix_366	ARR14	Not Available	52.62%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.56%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	52.46%
Matrix_224	ERF1	Not Available	52.36%
Matrix_204	WOX13	Not Available	52.22%
Matrix_296	GBF2	Not Available	52.21%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.17%
Matrix_106	AT5G47390	Not Available	52.10%
Matrix_31	SPL1	Not Available	51.98%
Matrix_279	HRS1	Not Available	51.87%
Matrix_245	WRKY62; WRKY38	Not Available	51.77%
Matrix_520	ARR14	Not Available	51.67%
Matrix_175	Dof5.7	Not Available	51.53%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	51.50%
Matrix_157	LHY; RVE2	Not Available	51.47%
Matrix_344	ATERF15; AT4G18450	Not Available	51.45%
Matrix_100	AT1G48610	Not Available	51.40%
Matrix_14	ZCW32; AT5G62610	Not Available	51.24%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	51.16%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	51.01%
Matrix_288	RAP2.3	Not Available	50.90%
Matrix_87	AT1G19000	Not Available	50.90%
Matrix_119	RRTF1	Not Available	50.85%
Matrix_254	MYB52	Not Available	50.74%
Matrix_472	ZN_C2_H2	Not Available	50.73%
Matrix_300	bZIP68; bZIP16	Not Available	50.38%
Matrix_210	ARR1	Not Available	50.35%
Matrix_253	ETT	Not Available	50.30%
Matrix_177	ADOF2	Not Available	50.19%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	50.17%
Matrix_4	ARR14	Not Available	50.02%