PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_495
Name: HD-GL2-1; ANL2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	72.85%
Matrix_435	ATHB51	Not Available	72.27%
Matrix_13	HAT5	Not Available	71.21%
Matrix_302	HAT1; HAT2	Not Available	69.68%
Matrix_93	YAB5	Not Available	69.36%
Matrix_9	AT5G04760	Not Available	68.57%
Matrix_32	AHL25	Not Available	68.56%
Matrix_54	AHL20	Not Available	68.55%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	68.18%
Matrix_182	ATHB6	Not Available	67.96%
Matrix_431	ATHB21; HB-3	Not Available	67.34%
Matrix_168	AHL25	Not Available	66.58%
Matrix_81	YAB1	Not Available	66.55%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	66.35%
Matrix_461	ATHB12	Not Available	66.27%
Matrix_88	AHL12	Not Available	66.21%
Matrix_483	ICU4	Not Available	66.20%
Matrix_71	ATHB7	Not Available	64.68%
Matrix_97	APRR2	Not Available	64.54%
Matrix_444	AT1G19485; AT4G17950	Not Available	64.31%
Matrix_441	ATHB5	Not Available	63.59%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	63.32%
Matrix_212	ATHB-12	Not Available	63.32%
Matrix_491	AT1G68670; AT3G25790	Not Available	63.05%
Matrix_225	MYB52	Not Available	63.04%
Matrix_391	AHL20	Not Available	62.97%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	62.97%
Matrix_308	INO	Not Available	62.92%
Matrix_8	KAN1	Not Available	62.60%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	62.45%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	62.42%
Matrix_258	WOX13	Not Available	62.41%
Matrix_429	KAN4	Not Available	61.90%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	61.84%
Matrix_12	EIN3; EIL2	Not Available	61.78%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	61.68%
Matrix_69	AT2G03500	Not Available	60.65%
Matrix_494	OBP4	Not Available	60.18%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	60.05%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	59.97%
Matrix_361	AT1G25550	Not Available	59.86%
Matrix_62	HAT5	Not Available	59.85%
Matrix_521	AHL20	Not Available	59.77%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	59.69%
Matrix_328	AT1G76580	Not Available	59.67%
Matrix_286	GATA7	Not Available	59.65%
Matrix_204	WOX13	Not Available	59.56%
Matrix_329	WRKY12	Not Available	59.54%
Matrix_259	AT1G50680; AT1G51120	Not Available	59.28%
Matrix_336	AT5G08520	Not Available	59.27%
Matrix_210	ARR1	Not Available	59.25%
Matrix_4	ARR14	Not Available	59.14%
Matrix_157	LHY; RVE2	Not Available	59.02%
Matrix_162	AtPHR1	Not Available	58.91%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	58.90%
Matrix_125	AHL12	Not Available	58.83%
Matrix_439	AP3	Not Available	58.69%
Matrix_185	AHL25	Not Available	58.66%
Matrix_376	WRKY45	Not Available	58.61%
Matrix_293	WRKY38	Not Available	58.55%
Matrix_424	MYB59	Not Available	58.54%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	58.47%
Matrix_16	AT3G04450; PHL1	Not Available	58.31%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	58.27%
Matrix_324	AT2G01060	Not Available	58.18%
Matrix_29	AP1	Not Available	58.08%
Matrix_227	AT1G64620	Not Available	58.02%
Matrix_249	WRKY11	Not Available	57.94%
Matrix_75	WRKY29	Not Available	57.87%
Matrix_106	AT5G47390	Not Available	57.87%
Matrix_500	WRKY43	Not Available	57.82%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	57.80%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	57.78%
Matrix_318	ATHB16	Not Available	57.76%
Matrix_136	SEP3	Not Available	57.71%
Matrix_17	WRKY22	Not Available	57.70%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	57.69%
Matrix_393	REM1	Not Available	57.68%
Matrix_206	CUC1; ANAC100	Not Available	57.61%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	57.54%
Matrix_341	HMGA	Not Available	57.54%
Matrix_87	AT1G19000	Not Available	57.48%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	57.44%
Matrix_354	AHL12	Not Available	57.29%
Matrix_240	AT4G29000	Not Available	57.28%
Matrix_6	AT1G70000	Not Available	57.25%
Motif_246	LBOXLERBCS	L box; Conserved sequence found in rbcS upstream sequences of both tomato and tobacco	57.10%
Matrix_382	AT3G04850	Not Available	57.10%
Matrix_271	AT3G16350	Not Available	57.04%
Matrix_46	AT4G21895	Not Available	56.96%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	56.95%
Matrix_447	RVE1	Not Available	56.94%
Matrix_72	CDF2	Not Available	56.93%
Matrix_423	AT3G04030	Not Available	56.67%
Matrix_213	ATHB22	Not Available	56.63%
Matrix_380	ATMYR1	Not Available	56.55%
Matrix_512	HAT3	Not Available	56.29%
Matrix_383	CCA1	Not Available	56.27%
Matrix_469	NAC041; NAC083	Not Available	56.19%
Matrix_3	WRKY48	Not Available	56.16%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.14%
Matrix_114	EPR1; AT3G10113	Not Available	56.11%
Matrix_333	GATA3	Not Available	56.11%
Matrix_160	RVE1	Not Available	56.07%
Matrix_370	WRKY50; WRKY51	Not Available	55.97%
Matrix_255	cdf3	Not Available	55.91%
Matrix_26	ATMYB3; MYB24	Not Available	55.67%
Matrix_226	GATA1	Not Available	55.63%
Matrix_99	DOF4.7	Not Available	55.57%
Matrix_408	GATA12	Not Available	55.53%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	55.36%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	55.34%
Matrix_70	GATA26	Not Available	55.31%
Motif_547	AG BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	55.30%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.19%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	55.19%
Matrix_337	MYB46	Not Available	55.12%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	55.11%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	55.03%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	55.00%
Matrix_347	WOX14; WOX10	Not Available	54.86%
Matrix_418	KNAT6; KNAT2	Not Available	54.71%
Matrix_148	WRKY60	Not Available	54.71%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	54.68%
Matrix_193	RAV1	Not Available	54.68%
Matrix_265	NGA3	Not Available	54.68%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	54.66%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	54.65%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	54.54%
Matrix_384	ATWRKY17	Not Available	54.38%
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	54.36%
Matrix_353	HAT5	Not Available	54.32%
Matrix_453	EIL3	Not Available	54.29%
Matrix_152	EIL1; AT5G65100	Not Available	54.28%
Matrix_41	anac058	Not Available	54.22%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	54.19%
Matrix_501	DAG2	Not Available	54.19%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	54.00%
Matrix_122	ABF1; AREB2	Not Available	53.99%
Matrix_92	AT1G33760	Not Available	53.97%
Matrix_489	RAV1	Not Available	53.93%
Matrix_195	GATA2; GATA4	Not Available	53.89%
Matrix_236	CCA1	Not Available	53.81%
Matrix_203	GATA9; GATA12	Not Available	53.68%
Matrix_315	MYB111	Not Available	53.68%
Matrix_115	AGL15	Not Available	53.49%
Matrix_254	MYB52	Not Available	53.46%
Matrix_463	HAT3.1	Not Available	53.38%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	53.10%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	53.00%
Matrix_367	REM1	Not Available	52.94%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	52.90%
Matrix_109	GBF3	Not Available	52.84%
Matrix_220	WRKY18	Not Available	52.83%
Matrix_471	KAN4	Not Available	52.78%
Matrix_404	OBP4	Not Available	52.77%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	52.76%
Matrix_332	SPT; ALC	Not Available	52.66%
Matrix_313	ATMYB65; MYB33	Not Available	52.63%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.63%
Matrix_392	ARR2	Not Available	52.59%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.56%
Matrix_230	ARR11	Not Available	52.56%
Matrix_452	MYB46	Not Available	52.49%
Matrix_163	AT2G20110	Not Available	52.49%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	52.38%
Matrix_151	ASIL1	Not Available	52.37%
Matrix_307	RGL2; RGL3	Not Available	52.36%
Matrix_269	FHY3/FAR1	Not Available	52.34%
Matrix_167	ZAT6	Not Available	52.32%
Matrix_415	WRKY27	Not Available	52.32%
Matrix_102	WRKY21	Not Available	52.32%
Matrix_67	GLK1	Not Available	52.26%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.24%
Matrix_450	SPL7	Not Available	52.24%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	52.22%
Matrix_502	AT3G13040	Not Available	52.22%
Matrix_178	HSFB2A	Not Available	52.19%
Matrix_142	ZFP8	Not Available	52.15%
Matrix_181	Dof5.7	Not Available	52.11%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	52.04%
Matrix_51	LFY	Not Available	51.98%
Motif_572	AGL15 BS in AtGA2ox6	The Embryo MADS Domain Protein AGAMOUS-LIKE15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism	51.97%
Matrix_141	AT3G25990	Not Available	51.89%
Matrix_434	ARR11	Not Available	51.87%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.85%
Matrix_274	EDF3	Not Available	51.84%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.80%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.72%
Matrix_523	FUSCA3	Not Available	51.58%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	51.57%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.49%
Matrix_188	SPL4	Not Available	51.48%
Matrix_352	LEC2	Not Available	51.46%
Matrix_85	SPL5	Not Available	51.46%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	51.32%
Matrix_37	GATA27	Not Available	51.22%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.18%
Matrix_84	AtGRF6	Not Available	51.17%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	51.07%
Matrix_303	ATWOX13	Not Available	51.02%
Matrix_513	SOL1; TSO1; TCX2	Not Available	51.01%
Matrix_197	NAP	Not Available	50.95%
Matrix_470	WRKY18	Not Available	50.83%
Matrix_205	AGL15	Not Available	50.80%
Matrix_442	AT5G62260	Not Available	50.78%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.73%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.71%
Matrix_350	ARR14	Not Available	50.63%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	50.60%
Matrix_83	PRR5	Not Available	50.54%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	50.49%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	50.48%
Matrix_78	AT3G45610	Not Available	50.44%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.43%
Matrix_21	HSFC1	Not Available	50.39%
Motif_570	POLASIG2	PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes	50.39%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	50.33%
Matrix_177	ADOF2	Not Available	50.09%