PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_494
Name: OBP4
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_404	OBP4	Not Available	76.37%
Matrix_254	MYB52	Not Available	72.24%
Matrix_137	SPL1; SPL12	Not Available	70.63%
Matrix_85	SPL5	Not Available	70.35%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	68.87%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	68.40%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	67.75%
Matrix_6	AT1G70000	Not Available	66.56%
Matrix_271	AT3G16350	Not Available	66.32%
Matrix_487	AT1G29160	Not Available	66.00%
Matrix_99	DOF4.7	Not Available	65.34%
Matrix_307	RGL2; RGL3	Not Available	65.16%
Matrix_106	AT5G47390	Not Available	65.11%
Matrix_411	DOF5.6	Not Available	64.53%
Matrix_157	LHY; RVE2	Not Available	64.41%
Matrix_336	AT5G08520	Not Available	64.34%
Matrix_416	ASL5	Not Available	63.87%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	63.32%
Matrix_227	AT1G64620	Not Available	62.60%
Matrix_188	SPL4	Not Available	62.54%
Matrix_447	RVE1	Not Available	62.33%
Matrix_177	ADOF2	Not Available	62.08%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	61.99%
Matrix_308	INO	Not Available	61.95%
Matrix_328	AT1G76580	Not Available	61.58%
Matrix_226	GATA1	Not Available	61.28%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	61.26%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	61.26%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	61.23%
Matrix_221	SPL7	Not Available	60.85%
Matrix_463	HAT3.1	Not Available	60.77%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	60.74%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	60.56%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	60.56%
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	60.52%
Matrix_195	GATA2; GATA4	Not Available	60.27%
Matrix_72	CDF2	Not Available	60.24%
Matrix_491	AT1G68670; AT3G25790	Not Available	60.22%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	60.17%
Matrix_93	YAB5	Not Available	59.96%
Matrix_286	GATA7	Not Available	59.91%
Matrix_97	APRR2	Not Available	59.80%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	59.60%
Matrix_520	ARR14	Not Available	59.59%
Matrix_412	GL1	Not Available	59.49%
Matrix_469	NAC041; NAC083	Not Available	59.43%
Matrix_502	AT3G13040	Not Available	59.23%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	59.23%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	59.05%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	59.02%
Matrix_181	Dof5.7	Not Available	59.00%
Matrix_26	ATMYB3; MYB24	Not Available	58.98%
Matrix_408	GATA12	Not Available	58.78%
Matrix_12	EIN3; EIL2	Not Available	58.69%
Matrix_418	KNAT6; KNAT2	Not Available	58.63%
Matrix_460	NAM; anac025; ATNAC2	Not Available	58.62%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	58.49%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	58.41%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	58.38%
Matrix_69	AT2G03500	Not Available	58.11%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	58.06%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	57.86%
Matrix_38	SPL14	Not Available	57.72%
Matrix_362	DEAR3	Not Available	57.47%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	57.27%
Matrix_501	DAG2	Not Available	57.10%
Matrix_81	YAB1	Not Available	56.98%
Matrix_434	ARR11	Not Available	56.97%
Matrix_162	AtPHR1	Not Available	56.85%
Matrix_212	ATHB-12	Not Available	56.82%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	56.80%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	56.72%
Matrix_415	WRKY27	Not Available	56.71%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	56.67%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	56.64%
Matrix_361	AT1G25550	Not Available	56.58%
Matrix_249	WRKY11	Not Available	56.57%
Matrix_236	CCA1	Not Available	56.44%
Matrix_500	WRKY43	Not Available	56.34%
Matrix_329	WRKY12	Not Available	56.31%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	56.31%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	56.30%
Matrix_495	HD-GL2-1; ANL2	Not Available	56.20%
Matrix_182	ATHB6	Not Available	56.17%
Matrix_80	BIM1	Not Available	55.97%
Matrix_392	ARR2	Not Available	55.93%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	55.88%
Matrix_518	AT2G21230	Not Available	55.82%
Matrix_504	WRKY40	Not Available	55.82%
Matrix_32	AHL25	Not Available	55.64%
Matrix_255	cdf3	Not Available	55.63%
Matrix_78	AT3G45610	Not Available	55.51%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	55.48%
Matrix_423	AT3G04030	Not Available	55.36%
Matrix_248	ZFP5	Not Available	55.34%
Matrix_293	WRKY38	Not Available	55.31%
Matrix_152	EIL1; AT5G65100	Not Available	55.28%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	55.25%
Matrix_337	MYB46	Not Available	55.25%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.21%
Matrix_31	SPL1	Not Available	55.20%
Matrix_230	ARR11	Not Available	55.19%
Matrix_341	HMGA	Not Available	55.16%
Matrix_218	TIFY2B; TIFY1	Not Available	55.16%
Matrix_435	ATHB51	Not Available	55.14%
Matrix_424	MYB59	Not Available	55.05%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	55.04%
Matrix_165	KNAT1	Not Available	55.03%
Matrix_197	NAP	Not Available	54.96%
Matrix_210	ARR1	Not Available	54.95%
Matrix_16	AT3G04450; PHL1	Not Available	54.87%
Matrix_37	GATA27	Not Available	54.83%
Matrix_376	WRKY45	Not Available	54.73%
Matrix_302	HAT1; HAT2	Not Available	54.56%
Matrix_4	ARR14	Not Available	54.55%
Matrix_100	AT1G48610	Not Available	54.54%
Matrix_243	RAP2.12; RAP2.2	Not Available	54.49%
Matrix_315	MYB111	Not Available	54.46%
Matrix_461	ATHB12	Not Available	54.43%
Matrix_225	MYB52	Not Available	54.42%
Matrix_507	TCP3	Not Available	54.42%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.42%
Matrix_450	SPL7	Not Available	54.40%
Matrix_444	AT1G19485; AT4G17950	Not Available	54.34%
Matrix_71	ATHB7	Not Available	54.32%
Matrix_519	ATDOF2.4	Not Available	54.28%
Matrix_324	AT2G01060	Not Available	54.26%
Motif_596	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.20%
Motif_135	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.09%
Matrix_350	ARR14	Not Available	53.91%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	53.84%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.78%
Matrix_311	TGA1	Not Available	53.72%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	53.71%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.68%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	53.65%
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	53.65%
Matrix_382	AT3G04850	Not Available	53.61%
Matrix_54	AHL20	Not Available	53.52%
Matrix_46	AT4G21895	Not Available	53.40%
Matrix_185	AHL25	Not Available	53.34%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	53.34%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	53.31%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.30%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	53.29%
Motif_430	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.29%
Motif_205	WRKY43; WRKY38; WRKY26; WRKY11	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.29%
Matrix_9	AT5G04760	Not Available	53.28%
Matrix_209	RAP2.6	Not Available	53.17%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.05%
Matrix_258	WOX13	Not Available	52.98%
Matrix_379	RHL41	Not Available	52.94%
Matrix_109	GBF3	Not Available	52.82%
Matrix_406	ATERF-7	Not Available	52.80%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	52.77%
Matrix_167	ZAT6	Not Available	52.73%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	52.71%
Matrix_96	TMO6	Not Available	52.71%
Matrix_142	ZFP8	Not Available	52.67%
Matrix_70	GATA26	Not Available	52.64%
Matrix_128	TGA2	Not Available	52.52%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.51%
Matrix_180	SPL1	Not Available	52.50%
Motif_337	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.49%
Matrix_126	RBE	Not Available	52.49%
Matrix_241	HB-1; AT5G44180	Not Available	52.44%
Matrix_141	AT3G25990	Not Available	52.39%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.39%
Motif_141	BP5OSWX	OsBP-5 (a MYC protein) binding site in Wx promoter	52.31%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	52.28%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	52.27%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	52.27%
Matrix_148	WRKY60	Not Available	52.21%
Matrix_17	WRKY22	Not Available	52.13%
Matrix_319	TEM1	Not Available	52.08%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	52.06%
Matrix_62	HAT5	Not Available	52.05%
Matrix_206	CUC1; ANAC100	Not Available	52.00%
Matrix_331	GBF1	Not Available	51.98%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.98%
Matrix_366	ARR14	Not Available	51.95%
Matrix_163	AT2G20110	Not Available	51.92%
Matrix_505	GATA8	Not Available	51.91%
Matrix_41	anac058	Not Available	51.81%
Motif_386	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.79%
Matrix_239	AT5G04390	Not Available	51.79%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	51.72%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	51.70%
Matrix_159	TEM2	Not Available	51.59%
Matrix_168	AHL25	Not Available	51.57%
Matrix_8	KAN1	Not Available	51.50%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	51.48%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.47%
Matrix_151	ASIL1	Not Available	51.43%
Matrix_521	AHL20	Not Available	51.39%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.38%
Motif_461	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	51.37%
Matrix_204	WOX13	Not Available	51.36%
Matrix_299	PFG3	Not Available	51.34%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.30%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	51.28%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.27%
Matrix_431	ATHB21; HB-3	Not Available	51.13%
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	51.13%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	51.12%
Matrix_327	ARR11	Not Available	51.06%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	51.05%
Matrix_389	ILR3	Not Available	51.01%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	50.99%
Matrix_421	GLK1	Not Available	50.89%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.84%
Matrix_462	ATERF-8	Not Available	50.76%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	50.75%
Matrix_432	AT1G77920	Not Available	50.69%
Matrix_88	AHL12	Not Available	50.67%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	50.61%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	50.61%
Motif_683	AtMYB2 BS in RD22	Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression	50.60%
Matrix_125	AHL12	Not Available	50.57%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	50.56%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.56%
Matrix_391	AHL20	Not Available	50.55%
Matrix_471	KAN4	Not Available	50.52%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	50.47%
Matrix_33	SPL11; SPL10; SPL2	Not Available	50.43%
Matrix_143	GATA14; GATA6; GATA5	Not Available	50.42%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	50.22%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	50.22%
Matrix_211	MYB3	Not Available	50.20%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.18%
Matrix_7	PIF4	Not Available	50.15%
Matrix_75	WRKY29	Not Available	50.13%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	50.12%
Matrix_441	ATHB5	Not Available	50.10%
Matrix_436	AT3G49930; AZF1	Not Available	50.07%
Matrix_393	REM1	Not Available	50.05%