PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_487
Name: AT1G29160
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_411	DOF5.6	Not Available	79.67%
Matrix_177	ADOF2	Not Available	76.45%
Matrix_96	TMO6	Not Available	68.25%
Matrix_519	ATDOF2.4	Not Available	67.98%
Matrix_78	AT3G45610	Not Available	66.38%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	65.62%
Matrix_99	DOF4.7	Not Available	64.22%
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	63.81%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	63.52%
Matrix_248	ZFP5	Not Available	61.40%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	61.09%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	60.43%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	59.74%
Matrix_100	AT1G48610	Not Available	59.10%
Matrix_241	HB-1; AT5G44180	Not Available	58.41%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	57.66%
Matrix_494	OBP4	Not Available	57.50%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	57.11%
Matrix_262	ATGRP2B; CSDP2	Not Available	56.85%
Matrix_255	cdf3	Not Available	56.53%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	55.93%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.91%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	55.84%
Matrix_84	AtGRF6	Not Available	55.53%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	55.42%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	55.08%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	55.07%
Matrix_137	SPL1; SPL12	Not Available	54.15%
Matrix_501	DAG2	Not Available	53.73%
Matrix_460	NAM; anac025; ATNAC2	Not Available	53.67%
Matrix_112	TBP2; TFIID-1	Not Available	53.38%
Matrix_35	YAB5; YAB3	Not Available	53.31%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.87%
Motif_190	WUSATAg	Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis	52.85%
Matrix_279	HRS1	Not Available	52.58%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	52.40%
Matrix_126	RBE	Not Available	52.00%
Motif_517	LEAFYATAG	Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis	51.97%
Matrix_274	EDF3	Not Available	51.94%
Matrix_239	AT5G04390	Not Available	51.73%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.65%
Matrix_62	HAT5	Not Available	51.62%
Matrix_503	AT2G37430; AT3G53600	Not Available	51.59%
Matrix_72	CDF2	Not Available	51.54%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	51.46%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	51.40%
Matrix_379	RHL41	Not Available	51.05%
Matrix_63	ARR10	Not Available	50.93%
Matrix_442	AT5G62260	Not Available	50.93%
Matrix_26	ATMYB3; MYB24	Not Available	50.57%
Matrix_227	AT1G64620	Not Available	50.50%
Motif_272	TAAAGSTKST1	TAAAG motif found in promoter of Solanum tuberosum KST1 gene; Target site for trans-acting StDof1 protein controlling guard cell-specific gene expression; KST1 gene encodes a K+ influx channel of guard cells	50.23%