Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | | 64.51% |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 63.40% |
Matrix_405 | DREB2C | Not Available | | 62.90% |
Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 62.25% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 59.45% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 58.79% |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | | 58.40% |
Matrix_426 | CRF1; CRF2 | Not Available | | 57.96% |
Matrix_281 | TCP13 | Not Available | | 57.63% |
Motif_622 | SORLIP2AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 57.37% |
Matrix_224 | ERF1 | Not Available | | 57.31% |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 57.04% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 56.20% |
Matrix_360 | ORA59 | Not Available | | 55.95% |
Matrix_165 | KNAT1 | Not Available | | 55.16% |
Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 54.75% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 54.68% |
Motif_264 | GCBP2ZMGAPC4 | Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285 | | 53.92% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 53.88% |
Matrix_170 | AT5G47660 | Not Available | | 53.57% |
Matrix_294 | MEE35 | Not Available | | 53.16% |
Matrix_504 | WRKY40 | Not Available | | 53.13% |
Matrix_84 | AtGRF6 | Not Available | | 52.92% |
Matrix_295 | ERF1 | Not Available | | 52.34% |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 52.13% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 52.02% |
Matrix_94 | TCP5 | Not Available | | 52.01% |
Matrix_78 | AT3G45610 | Not Available | | 51.90% |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | | 51.81% |
Matrix_274 | EDF3 | Not Available | | 51.50% |
Matrix_260 | CAMTA3 | Not Available | | 51.40% |
Matrix_334 | AT3G23230 | Not Available | | 51.37% |
Matrix_517 | ERF12 | Not Available | | 51.27% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 51.19% |
Matrix_138 | RRTF1 | Not Available | | 51.15% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 51.12% |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | | 51.11% |
Matrix_292 | FTQ4 | Not Available | | 50.99% |
Matrix_38 | SPL14 | Not Available | | 50.90% |
Matrix_343 | AT2G33710 | Not Available | | 50.60% |
Matrix_288 | RAP2.3 | Not Available | | 50.54% |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 50.46% |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 50.33% |
Matrix_484 | ATERF13 | Not Available | | 50.32% |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | | 50.31% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 50.30% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 50.27% |
Matrix_82 | TCP17 | Not Available | | 50.06% |