Matrix_122 | ABF1; AREB2 | Not Available | | 79.62% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 79.49% |
Matrix_104 | PI | Not Available | | 79.19% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 78.62% |
Matrix_449 | BIM2 | Not Available | | 77.96% |
Matrix_323 | BIM3 | Not Available | | 77.41% |
Matrix_330 | MYC2; TT8 | Not Available | | 77.15% |
Matrix_156 | POC1 | Not Available | | 77.06% |
Matrix_465 | MYC4 | Not Available | | 76.32% |
Matrix_55 | PIF3 | Not Available | | 75.82% |
Matrix_331 | GBF1 | Not Available | | 75.48% |
Matrix_120 | BEE2 | Not Available | | 75.10% |
Matrix_247 | PIF3 | Not Available | | 74.01% |
Matrix_80 | BIM1 | Not Available | | 73.56% |
Matrix_389 | ILR3 | Not Available | | 73.28% |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 72.95% |
Matrix_109 | GBF3 | Not Available | | 72.77% |
Matrix_129 | ABF1 | Not Available | | 72.19% |
Matrix_339 | bHLH104 | Not Available | | 71.85% |
Matrix_153 | AP2 | Not Available | | 71.57% |
Matrix_332 | SPT; ALC | Not Available | | 70.48% |
Motif_120 | ABRETAEM | ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC | | 69.50% |
Motif_112 | GBOX10NT | One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen | | 69.12% |
Motif_498 | SGBFGMGMAUX28 | bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter | | 68.86% |
Motif_197 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 68.81% |
Motif_400 | ABREAZMRAB28 | ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | | 68.74% |
Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 67.94% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 67.71% |
Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 67.54% |
Matrix_150 | UNE10; PIF7 | Not Available | | 67.49% |
Motif_418 | ABRE2HVA22 | ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG) | | 67.47% |
Motif_571 | GBOXSORBCS1 | G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots | | 67.46% |
Matrix_145 | GBF4; AT5G44080 | Not Available | | 67.36% |
Matrix_77 | PRR5 | Not Available | | 66.64% |
Motif_599 | LREBOXIIPCCHS1; HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 66.61% |
Matrix_7 | PIF4 | Not Available | | 66.31% |
Matrix_320 | MYC4 | Not Available | | 66.09% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 66.08% |
Motif_300 | ACGTROOT1; HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | | 66.05% |
Motif_542 | ABI5; AtMYC2; HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 65.95% |
Matrix_476 | bHLH115; bHLH34 | Not Available | | 65.80% |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 65.52% |
Matrix_440 | LFY | Not Available | | 65.39% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 65.23% |
Motif_314 | HY5AT | G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl | | 64.74% |
Matrix_296 | GBF2 | Not Available | | 64.71% |
Motif_252 | GBOXPC | G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner | | 64.24% |
Motif_617 | ABRE3HVA1 | ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response | | 64.07% |
Matrix_113 | ABI5 | Not Available | | 63.99% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 63.70% |
Matrix_134 | ABF1 | Not Available | | 63.62% |
Matrix_456 | bZIP60 | Not Available | | 63.50% |
Matrix_64 | PIF5 | Not Available | | 63.45% |
Matrix_233 | MYC3 | Not Available | | 63.42% |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | | 63.35% |
Motif_154 | ABREBNNAPA | ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex | | 63.26% |
Matrix_437 | MYC2 | Not Available | | 63.06% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 62.96% |
Matrix_518 | AT2G21230 | Not Available | | 62.88% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 62.85% |
Motif_244 | ABRE-like binding site motif | Not Available | | 62.79% |
Motif_507 | ABASEED1 | ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif | | 62.60% |
Matrix_116 | ANAC55 | Not Available | | 62.55% |
Matrix_278 | AtbZIP44 | Not Available | | 62.48% |
Matrix_511 | AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180 | Not Available | | 62.33% |
Matrix_369 | AT2G18300 | Not Available | | 62.19% |
Matrix_111 | ABF3 | Not Available | | 61.98% |
Matrix_90 | BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915 | Not Available | | 61.97% |
Matrix_404 | OBP4 | Not Available | | 61.84% |
Motif_56 | O2F3BE2S1 | opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box | | 61.44% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 61.16% |
Matrix_450 | SPL7 | Not Available | | 61.07% |
Matrix_321 | HRD | Not Available | | 61.05% |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | | 61.00% |
Motif_566 | AREB1; AREB2 | Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 60.79% |
Motif_162 | ABRE3HVA22 | ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 | | 60.74% |
Matrix_209 | RAP2.6 | Not Available | | 60.51% |
Matrix_409 | DEAR3 | Not Available | | 60.50% |
Matrix_31 | SPL1 | Not Available | | 60.42% |
Motif_234 | ABADESI2 | Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP | | 60.40% |
Matrix_41 | anac058 | Not Available | | 60.28% |
Motif_53 | ABREA2HVA1 | A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3 | | 60.15% |
Matrix_273 | ANAC55 | Not Available | | 60.04% |
Motif_499 | AtMYC2 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth | | 60.01% |
Motif_2 | ACGTSEED2 | ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02 | | 60.00% |
Motif_421 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 59.96% |
Matrix_443 | AGL15 | Not Available | | 59.91% |
Motif_406 | ABREBZMRAB28 | ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | | 59.77% |
Matrix_475 | AT5G64220 | Not Available | | 59.50% |
Matrix_359 | FLC | Not Available | | 59.42% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 59.24% |
Motif_644 | ABREDISTBBNNAPA | dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | | 59.21% |
Matrix_174 | ZAT2 | Not Available | | 59.19% |
Matrix_92 | AT1G33760 | Not Available | | 59.18% |
Motif_251 | SUP | The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif | | 59.11% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 59.06% |
Matrix_257 | NAC050; ANAC051; anac057; NAC2 | Not Available | | 59.04% |
Matrix_355 | ERF10; ERF11 | Not Available | | 58.97% |
Matrix_227 | AT1G64620 | Not Available | | 58.90% |
Matrix_141 | AT3G25990 | Not Available | | 58.83% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 58.77% |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | | 58.77% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 58.69% |
Matrix_61 | ATCBF3 | Not Available | | 58.69% |
Matrix_463 | HAT3.1 | Not Available | | 58.58% |
Matrix_151 | ASIL1 | Not Available | | 58.51% |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | | 58.46% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 58.37% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 58.31% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 58.29% |
Motif_202 | OPAQUE2ZM22Z | Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02 | | 58.23% |
Motif_237 | O2F1BE2S1 | opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box | | 58.23% |
Motif_338 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 58.19% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 58.02% |
Matrix_438 | AtbZIP63 | Not Available | | 57.98% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 57.96% |
Matrix_403 | BZR1 | Not Available | | 57.94% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 57.87% |
Matrix_420 | ANAC58 | Not Available | | 57.87% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 57.78% |
Matrix_171 | LBD3; LBD4 | Not Available | | 57.75% |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 57.62% |
Motif_665 | ACEATCHS | ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system | | 57.57% |
Matrix_188 | SPL4 | Not Available | | 57.57% |
Matrix_91 | CRF3 | Not Available | | 57.53% |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 57.50% |
Matrix_23 | ANAC46 | Not Available | | 57.42% |
Matrix_1 | TOE2 | Not Available | | 57.28% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 57.26% |
Motif_275 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 57.21% |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 57.19% |
Motif_516 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 57.19% |
Matrix_287 | ERF2 | Not Available | | 57.16% |
Motif_407 | CE3OSOSEM | CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 57.13% |
Matrix_336 | AT5G08520 | Not Available | | 57.09% |
Motif_124 | ABREMOTIFIIIOSRAB16B | Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 56.96% |
Motif_573 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 56.90% |
Motif_211 | ABREMOTIFIOSRAB16B | Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other | | 56.89% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 56.88% |
Matrix_244 | DREB2C | Not Available | | 56.87% |
Matrix_343 | AT2G33710 | Not Available | | 56.85% |
Matrix_211 | MYB3 | Not Available | | 56.69% |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | | 56.65% |
Matrix_214 | AP1 | Not Available | | 56.54% |
Matrix_221 | SPL7 | Not Available | | 56.54% |
Matrix_260 | CAMTA3 | Not Available | | 56.53% |
Motif_388 | CPRFPCCHS; AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 56.48% |
Matrix_452 | MYB46 | Not Available | | 56.42% |
Matrix_373 | E2FE | Not Available | | 56.37% |
Matrix_469 | NAC041; NAC083 | Not Available | | 56.34% |
Matrix_307 | RGL2; RGL3 | Not Available | | 56.31% |
Matrix_501 | DAG2 | Not Available | | 56.30% |
Matrix_422 | TOE1 | Not Available | | 56.26% |
Matrix_85 | SPL5 | Not Available | | 56.24% |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | | 56.19% |
Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 56.17% |
Matrix_448 | ATERF6 | Not Available | | 56.03% |
Matrix_261 | ATERF-1 | Not Available | | 55.99% |
Matrix_101 | ERF5 | Not Available | | 55.97% |
Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 55.94% |
Matrix_394 | DREB_U | Not Available | | 55.89% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 55.66% |
Motif_638 | ABRE binding site motif | Not Available | | 55.56% |
Matrix_186 | FHY3 | Not Available | | 55.45% |
Motif_354 | VSF1PVGRP18 | VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression | | 55.41% |
Matrix_97 | APRR2 | Not Available | | 55.40% |
Matrix_169 | E2F1 | Not Available | | 55.35% |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 55.16% |
Matrix_224 | ERF1 | Not Available | | 55.03% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 54.96% |
Motif_598 | SORLIP3AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 54.89% |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | | 54.78% |
Matrix_33 | SPL11; SPL10; SPL2 | Not Available | | 54.61% |
Matrix_433 | ATERF1 | Not Available | | 54.59% |
Matrix_226 | GATA1 | Not Available | | 54.55% |
Motif_344 | MSACRCYM | MSA (M-specific activator) motif in Catharanthus roseus B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58 | | 54.44% |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 54.41% |
Matrix_362 | DEAR3 | Not Available | | 54.35% |
Matrix_5 | AT5G51190; ERF104 | Not Available | | 54.33% |
Matrix_349 | CDC5 | Not Available | | 54.33% |
Matrix_187 | CDC5 | Not Available | | 54.33% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 54.30% |
Matrix_363 | RAP2.3 | Not Available | | 54.28% |
Motif_232 | ABADESI1 | Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1 | | 54.26% |
Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | | 54.25% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 54.21% |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | | 54.12% |
Matrix_416 | ASL5 | Not Available | | 54.11% |
Matrix_385 | DEAR4 | Not Available | | 53.94% |
Matrix_472 | ZN_C2_H2 | Not Available | | 53.92% |
Matrix_8 | KAN1 | Not Available | | 53.91% |
Motif_133 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 53.74% |
Matrix_451 | STY1 | Not Available | | 53.73% |
Matrix_65 | POC1; PIL1 | Not Available | | 53.66% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 53.62% |
Motif_9 | RBENTGA3 | rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs | | 53.61% |
Motif_158 | ZDNAFORMINGATCAB1 | Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene | | 53.60% |
Matrix_72 | CDF2 | Not Available | | 53.53% |
Motif_179 | CACGTGMOTIF; BES1; PIF4; PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 53.47% |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | | 53.42% |
Motif_349 | QARBNEXTA | QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene | | 53.33% |
Motif_330 | ANAERO5CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator | | 53.32% |
Matrix_308 | INO | Not Available | | 53.30% |
Matrix_181 | Dof5.7 | Not Available | | 53.23% |
Matrix_203 | GATA9; GATA12 | Not Available | | 53.11% |
Matrix_282 | bZIP60 | Not Available | | 53.10% |
Matrix_36 | RAV1_1 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | | 53.09% |
Matrix_12 | EIN3; EIL2 | Not Available | | 52.96% |
Motif_616 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 52.96% |
Matrix_234 | RAP2.3 | Not Available | | 52.94% |
Motif_690 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 52.84% |
Matrix_506 | DRNL; ATERF-4 | Not Available | | 52.83% |
Matrix_286 | GATA7 | Not Available | | 52.78% |
Matrix_136 | SEP3 | Not Available | | 52.76% |
Matrix_178 | HSFB2A | Not Available | | 52.76% |
Matrix_277 | RAP2.6 | Not Available | | 52.69% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 52.62% |
Motif_61 | PALBOXLPC | Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation | | 52.60% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 52.51% |
Motif_589 | ARECOREZMGAPC4 | Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction | | 52.44% |
Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 52.43% |
Matrix_137 | SPL1; SPL12 | Not Available | | 52.41% |
Matrix_193 | RAV1 | Not Available | | 52.37% |
Matrix_265 | NGA3 | Not Available | | 52.37% |
Motif_438 | CAMTA5; CAMTA1; CAMTA2; CAMTA3 | Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance | | 52.22% |
Motif_334 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 52.20% |
Matrix_135 | ABI3 | Not Available | | 52.20% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 52.17% |
Matrix_333 | GATA3 | Not Available | | 52.13% |
Matrix_285 | DDF1 | Not Available | | 52.10% |
Matrix_426 | CRF1; CRF2 | Not Available | | 52.10% |
Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 52.10% |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | | 52.05% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 51.93% |
Matrix_408 | GATA12 | Not Available | | 51.93% |
Motif_238 | AtWER | Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis | | 51.90% |
Matrix_119 | RRTF1 | Not Available | | 51.90% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 51.88% |
Matrix_258 | WOX13 | Not Available | | 51.87% |
Matrix_228 | TGA2 | Not Available | | 51.84% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 51.83% |
Motif_82 | ACGTSEED3 | ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site | | 51.82% |
Matrix_484 | ATERF13 | Not Available | | 51.82% |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 51.80% |
Matrix_70 | GATA26 | Not Available | | 51.80% |
Motif_311 | ANAC019; ANAC055; ANAC072 | Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter | | 51.73% |
Matrix_69 | AT2G03500 | Not Available | | 51.72% |
Matrix_45 | DRN | Not Available | | 51.69% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 51.65% |
Matrix_53 | MYC3 | Not Available | | 51.52% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 51.52% |
Matrix_334 | AT3G23230 | Not Available | | 51.50% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 51.49% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 51.48% |
Matrix_195 | GATA2; GATA4 | Not Available | | 51.45% |
Motif_535 | ACIPVPAL2 | ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene | | 51.44% |
Matrix_424 | MYB59 | Not Available | | 51.44% |
Matrix_288 | RAP2.3 | Not Available | | 51.44% |
Matrix_502 | AT3G13040 | Not Available | | 51.36% |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 51.35% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 51.30% |
Matrix_264 | ATAREB1 | Not Available | | 51.29% |
Matrix_190 | ATERF1 | Not Available | | 51.26% |
Matrix_315 | MYB111 | Not Available | | 51.26% |
Matrix_79 | FUS3 | Not Available | | 51.11% |
Matrix_138 | RRTF1 | Not Available | | 51.07% |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | | 51.05% |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 51.05% |
Matrix_494 | OBP4 | Not Available | | 51.05% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 51.04% |
Motif_250 | ACGTOSGLUB1 | ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression | | 51.01% |
Matrix_27 | ATAIB; ATNIG1 | Not Available | | 50.98% |
Matrix_128 | TGA2 | Not Available | | 50.96% |
Matrix_393 | REM1 | Not Available | | 50.95% |
Matrix_490 | AtMYB77; ATMYB44 | Not Available | | 50.94% |
Motif_528 | ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 50.91% |
Matrix_17 | WRKY22 | Not Available | | 50.90% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 50.90% |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 50.88% |
Motif_568 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.87% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 50.86% |
Motif_67 | LS5ATPR1 | LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors | | 50.86% |
Matrix_139 | OBF5 | Not Available | | 50.83% |
Matrix_460 | NAM; anac025; ATNAC2 | Not Available | | 50.81% |
Matrix_4 | ARR14 | Not Available | | 50.79% |
Motif_24 | CAMTA3 | Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance | | 50.73% |
Matrix_210 | ARR1 | Not Available | | 50.72% |
Matrix_255 | cdf3 | Not Available | | 50.71% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 50.66% |
Matrix_337 | MYB46 | Not Available | | 50.64% |
Matrix_204 | WOX13 | Not Available | | 50.63% |
Matrix_167 | ZAT6 | Not Available | | 50.58% |
Matrix_271 | AT3G16350 | Not Available | | 50.53% |
Matrix_311 | TGA1 | Not Available | | 50.49% |
Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 50.47% |
Matrix_432 | AT1G77920 | Not Available | | 50.47% |
Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 50.47% |
Motif_214 | TAC1 | Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1 | | 50.45% |
Matrix_446 | LBD16 | Not Available | | 50.41% |
Matrix_225 | MYB52 | Not Available | | 50.41% |
Matrix_352 | LEC2 | Not Available | | 50.24% |
Matrix_516 | ANAC038; ANAC079 | Not Available | | 50.24% |
Matrix_346 | AtMYB70; MYB73 | Not Available | | 50.24% |
Matrix_378 | ATERF1 | Not Available | | 50.18% |
Matrix_252 | RAP2.6 | Not Available | | 50.18% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 50.13% |
Matrix_157 | LHY; RVE2 | Not Available | | 50.09% |
Motif_531 | AP2SV40 | AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 50.09% |
Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.07% |
Matrix_75 | WRKY29 | Not Available | | 50.06% |
Matrix_380 | ATMYR1 | Not Available | | 50.04% |