| Matrix_430 | TOE2 | Not Available | | 90.21% |
| Matrix_193 | RAV1 | Not Available | | 73.87% |
| Matrix_265 | NGA3 | Not Available | | 73.87% |
| Matrix_410 | TOE2 | Not Available | | 68.93% |
| Matrix_81 | YAB1 | Not Available | | 68.37% |
| Matrix_396 | AP3 | Not Available | | 68.34% |
| Matrix_402 | TOE1 | Not Available | | 66.26% |
| Matrix_128 | TGA2 | Not Available | | 65.92% |
| Matrix_311 | TGA1 | Not Available | | 65.54% |
| Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | | 65.46% |
| Matrix_166 | TGA4 | Not Available | | 65.45% |
| Matrix_432 | AT1G77920 | Not Available | | 65.02% |
| Matrix_116 | ANAC55 | Not Available | | 63.70% |
| Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 63.67% |
| Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | | 63.43% |
| Matrix_204 | WOX13 | Not Available | | 62.87% |
| Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 62.71% |
| Matrix_93 | YAB5 | Not Available | | 62.55% |
| Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 61.67% |
| Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 61.08% |
| Matrix_176 | MYB98 | Not Available | | 61.08% |
| Matrix_175 | Dof5.7 | Not Available | | 61.01% |
| Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 61.00% |
| Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 60.77% |
| Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 60.46% |
| Matrix_277 | RAP2.6 | Not Available | | 59.47% |
| Matrix_258 | WOX13 | Not Available | | 59.01% |
| Matrix_151 | ASIL1 | Not Available | | 58.75% |
| Matrix_23 | ANAC46 | Not Available | | 58.62% |
| Matrix_273 | ANAC55 | Not Available | | 58.50% |
| Matrix_447 | RVE1 | Not Available | | 58.34% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 58.25% |
| Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | | 58.12% |
| Matrix_308 | INO | Not Available | | 57.82% |
| Matrix_141 | AT3G25990 | Not Available | | 57.72% |
| Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 57.68% |
| Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | | 57.60% |
| Matrix_442 | AT5G62260 | Not Available | | 57.54% |
| Matrix_167 | ZAT6 | Not Available | | 57.53% |
| Matrix_87 | AT1G19000 | Not Available | | 57.52% |
| Matrix_335 | HSFB2A | Not Available | | 57.24% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 56.95% |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 56.89% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 56.87% |
| Matrix_390 | GT-1 | Not Available | | 56.68% |
| Matrix_354 | AHL12 | Not Available | | 56.58% |
| Matrix_399 | TGA1 | Not Available | | 56.48% |
| Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 56.17% |
| Motif_166 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 56.09% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 56.02% |
| Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 55.70% |
| Matrix_521 | AHL20 | Not Available | | 55.69% |
| Matrix_212 | ATHB-12 | Not Available | | 55.69% |
| Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | | 55.47% |
| Motif_541 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 55.42% |
| Matrix_321 | HRD | Not Available | | 55.34% |
| Matrix_286 | GATA7 | Not Available | | 55.32% |
| Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 55.04% |
| Matrix_171 | LBD3; LBD4 | Not Available | | 54.82% |
| Matrix_394 | DREB_U | Not Available | | 54.77% |
| Matrix_226 | GATA1 | Not Available | | 54.65% |
| Motif_614 | MYBGAHV | Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression | | 54.58% |
| Matrix_139 | OBF5 | Not Available | | 54.49% |
| Matrix_129 | ABF1 | Not Available | | 54.49% |
| Matrix_408 | GATA12 | Not Available | | 54.41% |
| Matrix_397 | GT2L | Not Available | | 54.40% |
| Matrix_244 | DREB2C | Not Available | | 54.38% |
| Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | | 54.33% |
| Matrix_113 | ABI5 | Not Available | | 54.30% |
| Matrix_474 | ANAC014; ANAC062; NTL9; TIP | Not Available | | 54.19% |
| Motif_17 | AUXRETGA1GMGH3 | TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts | | 54.07% |
| Matrix_182 | ATHB6 | Not Available | | 54.04% |
| Matrix_434 | ARR11 | Not Available | | 53.95% |
| Matrix_92 | AT1G33760 | Not Available | | 53.80% |
| Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 53.75% |
| Matrix_471 | KAN4 | Not Available | | 53.75% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 53.63% |
| Matrix_420 | ANAC58 | Not Available | | 53.55% |
| Matrix_341 | HMGA | Not Available | | 53.55% |
| Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 53.42% |
| Matrix_486 | MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 53.35% |
| Motif_254 | MYB46; MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 53.35% |
| Matrix_400 | MYB46 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 53.35% |
| Matrix_122 | ABF1; AREB2 | Not Available | | 53.32% |
| Matrix_185 | AHL25 | Not Available | | 53.24% |
| Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 53.21% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 53.12% |
| Matrix_125 | AHL12 | Not Available | | 53.05% |
| Motif_101 | MYB61 | AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network | | 53.04% |
| Matrix_88 | AHL12 | Not Available | | 52.80% |
| Matrix_440 | LFY | Not Available | | 52.79% |
| Matrix_54 | AHL20 | Not Available | | 52.75% |
| Matrix_46 | AT4G21895 | Not Available | | 52.72% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 52.70% |
| Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 52.45% |
| Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 52.41% |
| Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | | 52.40% |
| Matrix_446 | LBD16 | Not Available | | 52.38% |
| Matrix_61 | ATCBF3 | Not Available | | 52.37% |
| Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | | 52.33% |
| Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 52.32% |
| Matrix_340 | HSFC1 | Not Available | | 52.29% |
| Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | | 52.27% |
| Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | | 52.23% |
| Matrix_91 | CRF3 | Not Available | | 52.23% |
| Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | | 52.19% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 52.19% |
| Matrix_385 | DEAR4 | Not Available | | 52.18% |
| Matrix_21 | HSFC1 | Not Available | | 52.09% |
| Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 51.98% |
| Motif_212 | GARE2OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | | 51.97% |
| Motif_377 | SURE2STPAT21 | Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | | 51.90% |
| Matrix_120 | BEE2 | Not Available | | 51.77% |
| Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 51.72% |
| Matrix_170 | AT5G47660 | Not Available | | 51.71% |
| Matrix_362 | DEAR3 | Not Available | | 51.57% |
| Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | | 51.53% |
| Matrix_332 | SPT; ALC | Not Available | | 51.49% |
| Matrix_409 | DEAR3 | Not Available | | 51.45% |
| Motif_362 | TGA2 octamer | palindromic octamer found enriched in chip-chip regions for TGA2 | | 51.44% |
| Matrix_363 | RAP2.3 | Not Available | | 51.38% |
| Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 51.34% |
| Matrix_261 | ATERF-1 | Not Available | | 51.30% |
| Matrix_203 | GATA9; GATA12 | Not Available | | 51.20% |
| Matrix_346 | AtMYB70; MYB73 | Not Available | | 51.15% |
| Matrix_384 | ATWRKY17 | Not Available | | 51.07% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 51.05% |
| Matrix_178 | HSFB2A | Not Available | | 50.96% |
| Matrix_433 | ATERF1 | Not Available | | 50.94% |
| Matrix_478 | AT1G01250 | Not Available | | 50.93% |
| Matrix_168 | AHL25 | Not Available | | 50.90% |
| Matrix_461 | ATHB12 | Not Available | | 50.76% |
| Matrix_162 | AtPHR1 | Not Available | | 50.76% |
| Matrix_456 | bZIP60 | Not Available | | 50.73% |
| Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 50.72% |
| Matrix_389 | ILR3 | Not Available | | 50.41% |
| Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 50.41% |
| Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 50.23% |
| Matrix_101 | ERF5 | Not Available | | 50.21% |
| Matrix_302 | HAT1; HAT2 | Not Available | | 50.13% |
| Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 50.10% |
| Matrix_17 | WRKY22 | Not Available | | 50.08% |
| Motif_639 | WRKY18 | Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis | | 50.03% |
| Matrix_288 | RAP2.3 | Not Available | | 50.00% |
| Matrix_504 | WRKY40 | Not Available | | 50.00% |
Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench