PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_461
Name: ATHB12
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_71	ATHB7	Not Available	90.07%
Matrix_302	HAT1; HAT2	Not Available	87.08%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	84.66%
Matrix_435	ATHB51	Not Available	83.92%
Matrix_93	YAB5	Not Available	77.35%
Matrix_182	ATHB6	Not Available	77.04%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	74.70%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	72.02%
Matrix_347	WOX14; WOX10	Not Available	71.39%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	71.31%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	70.81%
Matrix_441	ATHB5	Not Available	70.43%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	70.07%
Matrix_512	HAT3	Not Available	69.27%
Matrix_81	YAB1	Not Available	68.87%
Matrix_303	ATWOX13	Not Available	68.40%
Matrix_431	ATHB21; HB-3	Not Available	67.76%
Matrix_8	KAN1	Not Available	67.52%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	67.00%
Matrix_87	AT1G19000	Not Available	66.87%
Matrix_401	MYB55	Not Available	66.26%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	66.06%
Matrix_62	HAT5	Not Available	65.96%
Matrix_157	LHY; RVE2	Not Available	65.30%
Matrix_318	ATHB16	Not Available	65.17%
Matrix_308	INO	Not Available	64.93%
Matrix_434	ARR11	Not Available	64.46%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	64.21%
Matrix_88	AHL12	Not Available	64.19%
Matrix_212	ATHB-12	Not Available	64.07%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	63.63%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	63.29%
Matrix_206	CUC1; ANAC100	Not Available	63.15%
Matrix_259	AT1G50680; AT1G51120	Not Available	63.02%
Matrix_483	ICU4	Not Available	62.98%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	62.96%
Matrix_495	HD-GL2-1; ANL2	Not Available	62.90%
Matrix_491	AT1G68670; AT3G25790	Not Available	62.70%
Matrix_274	EDF3	Not Available	62.67%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	62.19%
Matrix_32	AHL25	Not Available	62.05%
Matrix_408	GATA12	Not Available	61.98%
Matrix_9	AT5G04760	Not Available	61.76%
Matrix_12	EIN3; EIL2	Not Available	61.70%
Matrix_97	APRR2	Not Available	61.66%
Matrix_249	WRKY11	Not Available	61.63%
Matrix_225	MYB52	Not Available	61.57%
Matrix_41	anac058	Not Available	61.22%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	61.12%
Matrix_327	ARR11	Not Available	60.99%
Matrix_391	AHL20	Not Available	60.80%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	60.78%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	60.73%
Matrix_69	AT2G03500	Not Available	60.63%
Matrix_54	AHL20	Not Available	60.38%
Matrix_195	GATA2; GATA4	Not Available	60.20%
Matrix_162	AtPHR1	Not Available	60.15%
Matrix_114	EPR1; AT3G10113	Not Available	59.89%
Matrix_210	ARR1	Not Available	59.76%
Matrix_366	ARR14	Not Available	59.59%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	59.51%
Matrix_226	GATA1	Not Available	59.45%
Matrix_16	AT3G04450; PHL1	Not Available	59.29%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	59.16%
Matrix_500	WRKY43	Not Available	59.10%
Matrix_471	KAN4	Not Available	59.05%
Matrix_4	ARR14	Not Available	59.02%
Matrix_336	AT5G08520	Not Available	59.02%
Matrix_444	AT1G19485; AT4G17950	Not Available	59.02%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	58.89%
Matrix_501	DAG2	Not Available	58.84%
Matrix_254	MYB52	Not Available	58.82%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	58.75%
Matrix_99	DOF4.7	Not Available	58.63%
Matrix_72	CDF2	Not Available	58.61%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	58.61%
Matrix_361	AT1G25550	Not Available	58.48%
Matrix_168	AHL25	Not Available	58.32%
Matrix_13	HAT5	Not Available	58.27%
Matrix_447	RVE1	Not Available	58.13%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.11%
Matrix_416	ASL5	Not Available	57.98%
Matrix_425	TIFY2A	Not Available	57.88%
Matrix_324	AT2G01060	Not Available	57.71%
Matrix_429	KAN4	Not Available	57.19%
Matrix_185	AHL25	Not Available	57.11%
Matrix_380	ATMYR1	Not Available	57.01%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	56.99%
Matrix_46	AT4G21895	Not Available	56.95%
Matrix_125	AHL12	Not Available	56.93%
Matrix_85	SPL5	Not Available	56.84%
Matrix_21	HSFC1	Not Available	56.83%
Matrix_328	AT1G76580	Not Available	56.76%
Matrix_455	MYB111	Not Available	56.75%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.65%
Matrix_286	GATA7	Not Available	56.63%
Matrix_423	AT3G04030	Not Available	56.58%
Matrix_241	HB-1; AT5G44180	Not Available	56.36%
Matrix_227	AT1G64620	Not Available	56.35%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	56.28%
Matrix_129	ABF1	Not Available	56.22%
Matrix_350	ARR14	Not Available	56.17%
Matrix_142	ZFP8	Not Available	55.88%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	55.87%
Matrix_178	HSFB2A	Not Available	55.84%
Matrix_151	ASIL1	Not Available	55.83%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	55.77%
Matrix_415	WRKY27	Not Available	55.75%
Matrix_167	ZAT6	Not Available	55.74%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	55.49%
Matrix_332	SPT; ALC	Not Available	55.48%
Matrix_315	MYB111	Not Available	55.38%
Matrix_143	GATA14; GATA6; GATA5	Not Available	55.38%
Matrix_255	cdf3	Not Available	55.37%
Matrix_469	NAC041; NAC083	Not Available	55.34%
Matrix_38	SPL14	Not Available	55.32%
Matrix_258	WOX13	Not Available	55.29%
Matrix_197	NAP	Not Available	55.28%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	55.28%
Matrix_505	GATA8	Not Available	55.04%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	54.97%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.84%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	54.67%
Matrix_14	ZCW32; AT5G62610	Not Available	54.65%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	54.64%
Matrix_177	ADOF2	Not Available	54.60%
Matrix_141	AT3G25990	Not Available	54.59%
Matrix_494	OBP4	Not Available	54.43%
Matrix_313	ATMYB65; MYB33	Not Available	54.42%
Matrix_203	GATA9; GATA12	Not Available	54.37%
Matrix_322	NST3; ANAC015; BRN2	Not Available	54.31%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	54.24%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	54.23%
Matrix_521	AHL20	Not Available	54.11%
Matrix_181	Dof5.7	Not Available	54.05%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	54.00%
Matrix_427	ZAT14	Not Available	53.99%
Matrix_411	DOF5.6	Not Available	53.96%
Matrix_160	RVE1	Not Available	53.90%
Matrix_236	CCA1	Not Available	53.84%
Matrix_233	MYC3	Not Available	53.63%
Matrix_78	AT3G45610	Not Available	53.57%
Matrix_59	AT4G00238; AT4G00250	Not Available	53.46%
Matrix_271	AT3G16350	Not Available	53.36%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	53.36%
Matrix_382	AT3G04850	Not Available	53.33%
Matrix_174	ZAT2	Not Available	53.14%
Matrix_152	EIL1; AT5G65100	Not Available	53.11%
Matrix_337	MYB46	Not Available	53.10%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	53.08%
Matrix_204	WOX13	Not Available	53.08%
Matrix_201	AT1G74840	Not Available	52.99%
Matrix_67	GLK1	Not Available	52.91%
Matrix_392	ARR2	Not Available	52.85%
Matrix_218	TIFY2B; TIFY1	Not Available	52.79%
Matrix_518	AT2G21230	Not Available	52.76%
Matrix_65	POC1; PIL1	Not Available	52.60%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	52.59%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.52%
Matrix_230	ARR11	Not Available	52.51%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.51%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.49%
Matrix_27	ATAIB; ATNIG1	Not Available	52.41%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	52.38%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	52.37%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.23%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	52.21%
Matrix_341	HMGA	Not Available	52.20%
Matrix_165	KNAT1	Not Available	52.18%
Matrix_502	AT3G13040	Not Available	52.09%
Matrix_333	GATA3	Not Available	52.00%
Matrix_84	AtGRF6	Not Available	51.99%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.90%
Matrix_430	TOE2	Not Available	51.89%
Matrix_519	ATDOF2.4	Not Available	51.86%
Matrix_248	ZFP5	Not Available	51.82%
Matrix_383	CCA1	Not Available	51.77%
Matrix_17	WRKY22	Not Available	51.72%
Matrix_70	GATA26	Not Available	51.70%
Matrix_404	OBP4	Not Available	51.58%
Matrix_171	LBD3; LBD4	Not Available	51.55%
Matrix_418	KNAT6; KNAT2	Not Available	51.46%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	51.41%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	51.41%
Matrix_6	AT1G70000	Not Available	51.38%
Matrix_311	TGA1	Not Available	51.32%
Matrix_240	AT4G29000	Not Available	51.30%
Matrix_106	AT5G47390	Not Available	51.22%
Matrix_120	BEE2	Not Available	51.09%
Matrix_109	GBF3	Not Available	50.90%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	50.81%
Matrix_346	AtMYB70; MYB73	Not Available	50.80%
Matrix_80	BIM1	Not Available	50.77%
Matrix_479	TOE1	Not Available	50.76%
Matrix_437	MYC2	Not Available	50.69%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	50.64%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	50.62%
Matrix_63	ARR10	Not Available	50.49%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	50.46%
Matrix_237	MYB55	Not Available	50.44%
Matrix_424	MYB59	Not Available	50.41%
Matrix_504	WRKY40	Not Available	50.40%
Matrix_137	SPL1; SPL12	Not Available	50.39%
Matrix_354	AHL12	Not Available	50.31%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.30%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.28%
Matrix_166	TGA4	Not Available	50.23%
Matrix_490	AtMYB77; ATMYB44	Not Available	50.21%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.10%
Matrix_52	ZAT18	Not Available	50.09%