Motif_352 | ATHB5 binding site motif | Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | | 89.19% |
Motif_277 | ATHB1 binding site motif | Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 88.03% |
Motif_169 | ATHB2 binding site motif | Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 86.57% |
Matrix_103 | ATHB1 | The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 84.43% |
Matrix_62 | HAT5 | Not Available | | 80.41% |
Motif_87 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 77.01% |
Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 75.55% |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | | 73.24% |
Matrix_435 | ATHB51 | Not Available | | 72.62% |
Matrix_318 | ATHB16 | Not Available | | 71.29% |
Matrix_391 | AHL20 | Not Available | | 68.80% |
Matrix_461 | ATHB12 | Not Available | | 67.14% |
Motif_298 | GMHDLGMVSPB | Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein | | 66.32% |
Matrix_483 | ICU4 | Not Available | | 66.16% |
Matrix_71 | ATHB7 | Not Available | | 64.82% |
Matrix_431 | ATHB21; HB-3 | Not Available | | 64.24% |
Matrix_302 | HAT1; HAT2 | Not Available | | 63.68% |
Matrix_182 | ATHB6 | Not Available | | 61.37% |
Motif_382 | CATATGGMSAUR | Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 61.19% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 60.90% |
Matrix_81 | YAB1 | Not Available | | 60.73% |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | | 60.61% |
Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 60.49% |
Motif_533 | Bellringer/replumless/pennywise BS3 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 60.30% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 60.05% |
Matrix_93 | YAB5 | Not Available | | 59.57% |
Matrix_32 | AHL25 | Not Available | | 59.40% |
Motif_284 | GT-2 | DNA binding factor GT-2 from Arabidopsis | | 59.06% |
Matrix_54 | AHL20 | Not Available | | 58.81% |
Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 58.59% |
Matrix_88 | AHL12 | Not Available | | 58.20% |
Motif_91 | SORLIP4AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 57.97% |
Motif_231 | EIN3 | Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3 | | 57.73% |
Motif_356 | S2FSORPL21 | S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site | | 57.28% |
Matrix_185 | AHL25 | Not Available | | 56.79% |
Matrix_13 | HAT5 | Not Available | | 56.63% |
Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 56.37% |
Matrix_168 | AHL25 | Not Available | | 55.88% |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | | 55.84% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 55.53% |
Matrix_495 | HD-GL2-1; ANL2 | Not Available | | 55.50% |
Motif_677 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 55.09% |
Matrix_423 | AT3G04030 | Not Available | | 54.95% |
Matrix_427 | ZAT14 | Not Available | | 54.71% |
Matrix_160 | RVE1 | Not Available | | 54.42% |
Motif_263 | RYREPEATVFLEB4; ABI3 | RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 54.37% |
Motif_414 | ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 54.23% |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 54.22% |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | | 54.10% |
Motif_447 | AtMYC2 BS in RD22; PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 53.97% |
Matrix_157 | LHY; RVE2 | Not Available | | 53.68% |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | | 53.48% |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | | 53.36% |
Matrix_262 | ATGRP2B; CSDP2 | Not Available | | 52.99% |
Matrix_383 | CCA1 | Not Available | | 52.97% |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 52.87% |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | | 52.71% |
Motif_188 | CDA1ATCAB2 | CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis | | 52.71% |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | | 52.70% |
Motif_345 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 52.70% |
Matrix_8 | KAN1 | Not Available | | 52.65% |
Matrix_453 | EIL3 | Not Available | | 52.31% |
Matrix_46 | AT4G21895 | Not Available | | 52.24% |
Matrix_124 | AtHB23; ATHB13; ATHB20; ATHB5 | Not Available | | 52.24% |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 52.20% |
Matrix_442 | AT5G62260 | Not Available | | 51.84% |
Motif_108 | ROOTMOTIFTAPOX1 | Motif found both in promoters of rolD | | 51.79% |
Motif_540 | CCA1 motif1 BS in CAB1 | A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 51.64% |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | | 51.57% |
Matrix_99 | DOF4.7 | Not Available | | 51.56% |
Matrix_521 | AHL20 | Not Available | | 51.44% |
Matrix_347 | WOX14; WOX10 | Not Available | | 51.31% |
Motif_581 | AP1 BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 51.07% |
Motif_656 | AG BS in SUP | Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | | 51.07% |
Motif_373 | TATABOX1 | TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 51.06% |
Motif_190 | WUSATAg | Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis | | 50.94% |
Matrix_434 | ARR11 | Not Available | | 50.93% |
Matrix_429 | KAN4 | Not Available | | 50.90% |
Matrix_415 | WRKY27 | Not Available | | 50.87% |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | | 50.72% |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 50.51% |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | | 50.44% |
Matrix_197 | NAP | Not Available | | 50.28% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 50.14% |