PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_429
Name: KAN4
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_178	HSFB2A	Not Available	83.73%
Matrix_21	HSFC1	Not Available	81.44%
Motif_115	HSEs binding site motif	Arabidopsis and the heat stress transcription factor world: how many heat stress transcription factors do we need?	75.18%
Matrix_8	KAN1	Not Available	74.26%
Matrix_471	KAN4	Not Available	72.10%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	71.64%
Matrix_114	EPR1; AT3G10113	Not Available	70.56%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	65.11%
Matrix_160	RVE1	Not Available	64.33%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	64.20%
Matrix_383	CCA1	Not Available	63.66%
Matrix_421	GLK1	Not Available	63.58%
Matrix_88	AHL12	Not Available	62.01%
Matrix_435	ATHB51	Not Available	61.76%
Matrix_391	AHL20	Not Available	60.81%
Matrix_157	LHY; RVE2	Not Available	60.60%
Matrix_483	ICU4	Not Available	60.03%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	59.93%
Matrix_93	YAB5	Not Available	59.59%
Matrix_302	HAT1; HAT2	Not Available	59.38%
Matrix_182	ATHB6	Not Available	59.02%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	59.01%
Matrix_444	AT1G19485; AT4G17950	Not Available	58.67%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	58.40%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	58.38%
Matrix_495	HD-GL2-1; ANL2	Not Available	58.09%
Matrix_212	ATHB-12	Not Available	57.74%
Matrix_502	AT3G13040	Not Available	57.71%
Matrix_333	GATA3	Not Available	57.62%
Matrix_431	ATHB21; HB-3	Not Available	57.41%
Matrix_236	CCA1	Not Available	57.20%
Matrix_461	ATHB12	Not Available	57.19%
Matrix_97	APRR2	Not Available	57.05%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	56.95%
Matrix_67	GLK1	Not Available	56.84%
Matrix_167	ZAT6	Not Available	56.71%
Matrix_210	ARR1	Not Available	56.63%
Matrix_4	ARR14	Not Available	56.54%
Matrix_71	ATHB7	Not Available	56.52%
Matrix_392	ARR2	Not Available	56.49%
Matrix_279	HRS1	Not Available	56.34%
Matrix_491	AT1G68670; AT3G25790	Not Available	56.20%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.10%
Motif_262	WRKY70	Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana	55.97%
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	55.95%
Matrix_434	ARR11	Not Available	55.84%
Matrix_441	ATHB5	Not Available	55.81%
Matrix_255	cdf3	Not Available	55.76%
Matrix_62	HAT5	Not Available	55.69%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	55.60%
Matrix_72	CDF2	Not Available	55.35%
Matrix_120	BEE2	Not Available	55.30%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	55.06%
Matrix_259	AT1G50680; AT1G51120	Not Available	54.92%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	54.87%
Matrix_63	ARR10	Not Available	54.73%
Motif_29	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.72%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.62%
Matrix_70	GATA26	Not Available	54.57%
Matrix_69	AT2G03500	Not Available	54.55%
Matrix_13	HAT5	Not Available	54.50%
Matrix_318	ATHB16	Not Available	54.50%
Matrix_423	AT3G04030	Not Available	54.48%
Matrix_328	AT1G76580	Not Available	54.38%
Matrix_227	AT1G64620	Not Available	54.26%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	54.15%
Matrix_336	AT5G08520	Not Available	54.14%
Matrix_225	MYB52	Not Available	53.96%
Matrix_380	ATMYR1	Not Available	53.76%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.57%
Matrix_323	BIM3	Not Available	53.56%
Matrix_465	MYC4	Not Available	53.45%
Matrix_125	AHL12	Not Available	53.42%
Matrix_168	AHL25	Not Available	53.40%
Matrix_447	RVE1	Not Available	53.13%
Matrix_162	AtPHR1	Not Available	53.00%
Matrix_32	AHL25	Not Available	52.98%
Matrix_81	YAB1	Not Available	52.79%
Matrix_16	AT3G04450; PHL1	Not Available	52.75%
Matrix_181	Dof5.7	Not Available	52.71%
Matrix_366	ARR14	Not Available	52.65%
Matrix_330	MYC2; TT8	Not Available	52.63%
Matrix_206	CUC1; ANAC100	Not Available	52.56%
Matrix_9	AT5G04760	Not Available	52.48%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	52.32%
Matrix_141	AT3G25990	Not Available	52.25%
Matrix_354	AHL12	Not Available	52.24%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	52.21%
Matrix_218	TIFY2B; TIFY1	Not Available	52.16%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	52.13%
Matrix_501	DAG2	Not Available	52.13%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	52.09%
Matrix_159	TEM2	Not Available	52.04%
Matrix_46	AT4G21895	Not Available	52.00%
Matrix_339	bHLH104	Not Available	51.97%
Matrix_361	AT1G25550	Not Available	51.94%
Matrix_362	DEAR3	Not Available	51.89%
Matrix_185	AHL25	Not Available	51.86%
Matrix_452	MYB46	Not Available	51.73%
Matrix_17	WRKY22	Not Available	51.68%
Matrix_442	AT5G62260	Not Available	51.61%
Matrix_327	ARR11	Not Available	51.57%
Matrix_203	GATA9; GATA12	Not Available	51.54%
Matrix_142	ZFP8	Not Available	51.54%
Matrix_449	BIM2	Not Available	51.53%
Matrix_319	TEM1	Not Available	51.21%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	51.17%
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	51.15%
Matrix_37	GATA27	Not Available	51.14%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	51.11%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.03%
Matrix_324	AT2G01060	Not Available	51.02%
Matrix_389	ILR3	Not Available	51.01%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.89%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	50.89%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.89%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	50.81%
Matrix_75	WRKY29	Not Available	50.69%
Matrix_341	HMGA	Not Available	50.38%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.37%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	50.25%