PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_419
Name: TGA9; PAN; TGA6; bZIP65
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_432	AT1G77920	Not Available	88.91%
Matrix_128	TGA2	Not Available	84.89%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	83.58%
Matrix_311	TGA1	Not Available	81.68%
Matrix_166	TGA4	Not Available	80.60%
Matrix_399	TGA1	Not Available	77.78%
Matrix_139	OBF5	Not Available	74.14%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	74.08%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	73.75%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	72.68%
Matrix_457	TGA2	Not Available	72.52%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	69.06%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	69.06%
Matrix_228	TGA2	Not Available	68.47%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	67.83%
Matrix_113	ABI5	Not Available	67.74%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	67.59%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	67.59%
Matrix_282	bZIP60	Not Available	65.93%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	65.85%
Matrix_245	WRKY62; WRKY38	Not Available	65.64%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	65.41%
Matrix_504	WRKY40	Not Available	65.34%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	65.10%
Matrix_289	WRKY25	Not Available	64.95%
Matrix_265	NGA3	Not Available	64.33%
Matrix_193	RAV1	Not Available	64.33%
Matrix_192	FHY3/FAR1	Not Available	64.32%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	64.24%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	64.10%
Matrix_406	ATERF-7	Not Available	64.09%
Matrix_278	AtbZIP44	Not Available	63.99%
Matrix_176	MYB98	Not Available	63.77%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	63.75%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	63.75%
Matrix_479	TOE1	Not Available	63.67%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	63.17%
Matrix_369	AT2G18300	Not Available	63.09%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	63.07%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	62.92%
Matrix_462	ATERF-8	Not Available	62.88%
Matrix_456	bZIP60	Not Available	62.83%
Matrix_220	WRKY18	Not Available	62.59%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	62.59%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	62.58%
Matrix_332	SPT; ALC	Not Available	62.36%
Matrix_430	TOE2	Not Available	62.12%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	61.66%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	61.66%
Matrix_169	E2F1	Not Available	61.66%
Motif_244	ABRE-like binding site motif	Not Available	61.59%
Matrix_438	AtbZIP63	Not Available	61.09%
Matrix_20	ANAC030; NST1; NAC066	Not Available	60.89%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	60.88%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	60.66%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	60.66%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	60.37%
Matrix_323	BIM3	Not Available	60.35%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	60.17%
Motif_453	HEXMOTIFTAH3H4	hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site	60.00%
Matrix_273	ANAC55	Not Available	59.96%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	59.93%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	59.93%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	59.83%
Matrix_102	WRKY21	Not Available	59.52%
Matrix_3	WRKY48	Not Available	59.44%
Matrix_150	UNE10; PIF7	Not Available	59.37%
Matrix_449	BIM2	Not Available	59.18%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	59.15%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	59.10%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	59.06%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	59.00%
Matrix_60	AT1G01260; AT5G57150	Not Available	58.99%
Matrix_408	GATA12	Not Available	58.88%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	58.72%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	58.41%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	58.39%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	58.17%
Matrix_116	ANAC55	Not Available	58.14%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	58.13%
Matrix_120	BEE2	Not Available	58.05%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	57.98%
Matrix_470	WRKY18	Not Available	57.98%
Motif_607	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	57.84%
Matrix_226	GATA1	Not Available	57.65%
Matrix_64	PIF5	Not Available	57.63%
Matrix_384	ATWRKY17	Not Available	57.62%
Matrix_370	WRKY50; WRKY51	Not Available	57.38%
Motif_86	ACGTABOX	A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression	57.26%
Matrix_197	NAP	Not Available	57.22%
Motif_483	ABREMOTIFAOSOSEM	motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	57.10%
Matrix_330	MYC2; TT8	Not Available	56.95%
Matrix_420	ANAC58	Not Available	56.94%
Matrix_195	GATA2; GATA4	Not Available	56.84%
Matrix_233	MYC3	Not Available	56.72%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	56.58%
Matrix_465	MYC4	Not Available	56.54%
Motif_57	ABREOSRAB21	ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene	56.53%
Matrix_320	MYC4	Not Available	56.53%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	56.50%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	56.50%
Motif_33	ACGTCBOX	C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site	56.49%
Motif_590	MYB3 binding site motif	Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses	56.48%
Matrix_157	LHY; RVE2	Not Available	56.42%
Matrix_397	GT2L	Not Available	56.24%
Matrix_446	LBD16	Not Available	56.21%
Matrix_434	ARR11	Not Available	56.20%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	56.17%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.16%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	56.09%
Matrix_390	GT-1	Not Available	56.08%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.91%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.90%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	55.88%
Matrix_271	AT3G16350	Not Available	55.80%
Matrix_447	RVE1	Not Available	55.74%
Matrix_394	DREB_U	Not Available	55.67%
Matrix_55	PIF3	Not Available	55.65%
Matrix_75	WRKY29	Not Available	55.63%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	55.53%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	55.48%
Matrix_286	GATA7	Not Available	55.44%
Matrix_308	INO	Not Available	55.40%
Matrix_221	SPL7	Not Available	55.39%
Motif_585	ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH	PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis	55.31%
Matrix_260	CAMTA3	Not Available	55.28%
Matrix_389	ILR3	Not Available	55.19%
Matrix_387	ORA47	Not Available	55.16%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.13%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	55.04%
Matrix_92	AT1G33760	Not Available	55.04%
Matrix_216	TCP16	Not Available	54.99%
Matrix_437	MYC2	Not Available	54.95%
Motif_638	ABRE binding site motif	Not Available	54.93%
Matrix_129	ABF1	Not Available	54.88%
Matrix_145	GBF4; AT5G44080	Not Available	54.85%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.81%
Matrix_218	TIFY2B; TIFY1	Not Available	54.79%
Matrix_516	ANAC038; ANAC079	Not Available	54.76%
Matrix_502	AT3G13040	Not Available	54.57%
Matrix_244	DREB2C	Not Available	54.53%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	54.48%
Matrix_518	AT2G21230	Not Available	54.34%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	54.32%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	54.17%
Matrix_23	ANAC46	Not Available	54.12%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	54.11%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	54.07%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	54.05%
Matrix_61	ATCBF3	Not Available	53.91%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	53.82%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	53.79%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	53.75%
Matrix_476	bHLH115; bHLH34	Not Available	53.71%
Matrix_134	ABF1	Not Available	53.67%
Matrix_59	AT4G00238; AT4G00250	Not Available	53.49%
Matrix_336	AT5G08520	Not Available	53.35%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	53.29%
Matrix_415	WRKY27	Not Available	53.24%
Matrix_507	TCP3	Not Available	53.17%
Matrix_439	AP3	Not Available	53.13%
Matrix_385	DEAR4	Not Available	53.10%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	53.03%
Matrix_366	ARR14	Not Available	52.94%
Motif_574	MYB2 binding site motif	MYB transcription factors in plants	52.84%
Matrix_463	HAT3.1	Not Available	52.83%
Matrix_17	WRKY22	Not Available	52.76%
Matrix_203	GATA9; GATA12	Not Available	52.72%
Matrix_285	DDF1	Not Available	52.72%
Matrix_12	EIN3; EIL2	Not Available	52.66%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	52.59%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	52.59%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	52.57%
Matrix_104	PI	Not Available	52.57%
Motif_262	WRKY70	Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana	52.35%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	52.22%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	52.21%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.20%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	52.16%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	52.15%
Matrix_159	TEM2	Not Available	52.12%
Matrix_373	E2FE	Not Available	52.01%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.01%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	51.99%
Matrix_410	TOE2	Not Available	51.89%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	51.87%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	51.78%
Motif_627	ACGTABREMOTIFA2OSEM	Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis	51.73%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.66%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.66%
Matrix_319	TEM1	Not Available	51.66%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	51.60%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	51.49%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	51.47%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	51.47%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	51.46%
Matrix_188	SPL4	Not Available	51.45%
Matrix_433	ATERF1	Not Available	51.42%
Matrix_87	AT1G19000	Not Available	51.36%
Matrix_292	FTQ4	Not Available	51.35%
Matrix_509	LEC2	Not Available	51.35%
Matrix_165	KNAT1	Not Available	51.33%
Matrix_175	Dof5.7	Not Available	51.31%
Matrix_484	ATERF13	Not Available	51.29%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	51.24%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	51.23%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	51.20%
Matrix_482	AT2G25650; AT4G00270	Not Available	51.16%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	51.16%
Matrix_65	POC1; PIL1	Not Available	51.15%
Motif_101	MYB61	AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network	51.15%
Matrix_1	TOE2	Not Available	51.10%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.08%
Motif_263	RYREPEATVFLEB4; ABI3	RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.08%
Matrix_341	HMGA	Not Available	51.07%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	51.05%
Matrix_204	WOX13	Not Available	51.03%
Matrix_106	AT5G47390	Not Available	51.00%
Matrix_53	MYC3	Not Available	50.99%
Matrix_422	TOE1	Not Available	50.92%
Motif_339	ABRE-like binding site motif	Molecular responses to dehydration and low temperature	50.90%
Matrix_109	GBF3	Not Available	50.89%
Motif_319	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.88%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.88%
Matrix_111	ABF3	Not Available	50.87%
Matrix_57	WIN1; SHN3; SHN2	Not Available	50.82%
Matrix_339	bHLH104	Not Available	50.82%
Motif_24	CAMTA3	Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance	50.82%
Matrix_388	SNZ; SMZ; TOE2	Not Available	50.81%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	50.81%
Matrix_141	AT3G25990	Not Available	50.81%
Matrix_344	ATERF15; AT4G18450	Not Available	50.68%
Matrix_50	ATERF14; AT5G43410	Not Available	50.67%
Motif_403	WINPSTPIIIK	Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato	50.64%
Matrix_45	DRN	Not Available	50.60%
Matrix_259	AT1G50680; AT1G51120	Not Available	50.48%
Matrix_6	AT1G70000	Not Available	50.46%
Matrix_402	TOE1	Not Available	50.45%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	50.43%
Matrix_135	ABI3	Not Available	50.39%
Matrix_144	AT5G08330; AT5G23280	Not Available	50.34%
Matrix_258	WOX13	Not Available	50.25%
Matrix_180	SPL1	Not Available	50.24%
Matrix_243	RAP2.12; RAP2.2	Not Available	50.24%
Matrix_33	SPL11; SPL10; SPL2	Not Available	50.20%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.19%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	50.15%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	50.15%
Matrix_151	ASIL1	Not Available	50.10%
Matrix_295	ERF1	Not Available	50.04%
Matrix_328	AT1G76580	Not Available	50.03%
Matrix_392	ARR2	Not Available	50.01%
Motif_85	SORLIP5AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.01%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	50.00%