Matrix_432 | AT1G77920 | Not Available | | 88.91% |
Matrix_128 | TGA2 | Not Available | | 84.89% |
Motif_362 | TGA2 octamer | palindromic octamer found enriched in chip-chip regions for TGA2 | | 83.58% |
Matrix_311 | TGA1 | Not Available | | 81.68% |
Matrix_166 | TGA4 | Not Available | | 80.60% |
Matrix_399 | TGA1 | Not Available | | 77.78% |
Matrix_139 | OBF5 | Not Available | | 74.14% |
Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | | 74.08% |
Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 73.75% |
Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 72.68% |
Matrix_457 | TGA2 | Not Available | | 72.52% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 69.06% |
Motif_128 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 69.06% |
Matrix_228 | TGA2 | Not Available | | 68.47% |
Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 67.83% |
Matrix_113 | ABI5 | Not Available | | 67.74% |
Motif_17 | AUXRETGA1GMGH3 | TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts | | 67.59% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 67.59% |
Matrix_282 | bZIP60 | Not Available | | 65.93% |
Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 65.85% |
Matrix_245 | WRKY62; WRKY38 | Not Available | | 65.64% |
Matrix_235 | WRKY67; WRKY64; WRKY63; WRKY66 | Not Available | | 65.41% |
Matrix_504 | WRKY40 | Not Available | | 65.34% |
Motif_67 | LS5ATPR1 | LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors | | 65.10% |
Matrix_289 | WRKY25 | Not Available | | 64.95% |
Matrix_265 | NGA3 | Not Available | | 64.33% |
Matrix_193 | RAV1 | Not Available | | 64.33% |
Matrix_192 | FHY3/FAR1 | Not Available | | 64.32% |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 64.24% |
Motif_528 | ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 64.10% |
Matrix_406 | ATERF-7 | Not Available | | 64.09% |
Matrix_278 | AtbZIP44 | Not Available | | 63.99% |
Matrix_176 | MYB98 | Not Available | | 63.77% |
Motif_80 | AP1SV40 | AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 63.75% |
Motif_199 | GCN4OSGLUB1 | GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression | | 63.75% |
Matrix_479 | TOE1 | Not Available | | 63.67% |
Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 63.17% |
Matrix_369 | AT2G18300 | Not Available | | 63.09% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 63.07% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 62.92% |
Matrix_462 | ATERF-8 | Not Available | | 62.88% |
Matrix_456 | bZIP60 | Not Available | | 62.83% |
Matrix_220 | WRKY18 | Not Available | | 62.59% |
Motif_405 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 62.59% |
Motif_295 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 62.58% |
Matrix_332 | SPT; ALC | Not Available | | 62.36% |
Matrix_430 | TOE2 | Not Available | | 62.12% |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | | 61.66% |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | | 61.66% |
Matrix_169 | E2F1 | Not Available | | 61.66% |
Motif_244 | ABRE-like binding site motif | Not Available | | 61.59% |
Matrix_438 | AtbZIP63 | Not Available | | 61.09% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 60.89% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 60.88% |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 60.66% |
Motif_74 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 60.66% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 60.37% |
Matrix_323 | BIM3 | Not Available | | 60.35% |
Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 60.17% |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | | 60.00% |
Matrix_273 | ANAC55 | Not Available | | 59.96% |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 59.93% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 59.93% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 59.83% |
Matrix_102 | WRKY21 | Not Available | | 59.52% |
Matrix_3 | WRKY48 | Not Available | | 59.44% |
Matrix_150 | UNE10; PIF7 | Not Available | | 59.37% |
Matrix_449 | BIM2 | Not Available | | 59.18% |
Motif_4 | NAP | An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves | | 59.15% |
Motif_406 | ABREBZMRAB28 | ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues | | 59.10% |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | | 59.06% |
Motif_212 | GARE2OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | | 59.00% |
Matrix_60 | AT1G01260; AT5G57150 | Not Available | | 58.99% |
Matrix_408 | GATA12 | Not Available | | 58.88% |
Motif_544 | CACGCAATGMGH3 | Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein | | 58.72% |
Matrix_365 | AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1 | Not Available | | 58.41% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 58.39% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 58.17% |
Matrix_116 | ANAC55 | Not Available | | 58.14% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 58.13% |
Matrix_120 | BEE2 | Not Available | | 58.05% |
Motif_167 | SBP-box promoter motif | Molecular characterisation of the Arabidopsis SBP-box genes | | 57.98% |
Matrix_470 | WRKY18 | Not Available | | 57.98% |
Motif_607 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 57.84% |
Matrix_226 | GATA1 | Not Available | | 57.65% |
Matrix_64 | PIF5 | Not Available | | 57.63% |
Matrix_384 | ATWRKY17 | Not Available | | 57.62% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 57.38% |
Motif_86 | ACGTABOX | A-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repression | | 57.26% |
Matrix_197 | NAP | Not Available | | 57.22% |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | | 57.10% |
Matrix_330 | MYC2; TT8 | Not Available | | 56.95% |
Matrix_420 | ANAC58 | Not Available | | 56.94% |
Matrix_195 | GATA2; GATA4 | Not Available | | 56.84% |
Matrix_233 | MYC3 | Not Available | | 56.72% |
Motif_232 | ABADESI1 | Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1 | | 56.58% |
Matrix_465 | MYC4 | Not Available | | 56.54% |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 56.53% |
Matrix_320 | MYC4 | Not Available | | 56.53% |
Motif_202 | OPAQUE2ZM22Z | Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02 | | 56.50% |
Motif_237 | O2F1BE2S1 | opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box | | 56.50% |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | | 56.49% |
Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | | 56.48% |
Matrix_157 | LHY; RVE2 | Not Available | | 56.42% |
Matrix_397 | GT2L | Not Available | | 56.24% |
Matrix_446 | LBD16 | Not Available | | 56.21% |
Matrix_434 | ARR11 | Not Available | | 56.20% |
Motif_56 | O2F3BE2S1 | opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box | | 56.17% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 56.16% |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 56.09% |
Matrix_390 | GT-1 | Not Available | | 56.08% |
Motif_140 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 55.91% |
Motif_100 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 55.90% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 55.88% |
Matrix_271 | AT3G16350 | Not Available | | 55.80% |
Matrix_447 | RVE1 | Not Available | | 55.74% |
Matrix_394 | DREB_U | Not Available | | 55.67% |
Matrix_55 | PIF3 | Not Available | | 55.65% |
Matrix_75 | WRKY29 | Not Available | | 55.63% |
Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 55.53% |
Motif_478 | DREB2A; DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 55.48% |
Matrix_286 | GATA7 | Not Available | | 55.44% |
Matrix_308 | INO | Not Available | | 55.40% |
Matrix_221 | SPL7 | Not Available | | 55.39% |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | | 55.31% |
Matrix_260 | CAMTA3 | Not Available | | 55.28% |
Matrix_389 | ILR3 | Not Available | | 55.19% |
Matrix_387 | ORA47 | Not Available | | 55.16% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 55.13% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 55.04% |
Matrix_92 | AT1G33760 | Not Available | | 55.04% |
Matrix_216 | TCP16 | Not Available | | 54.99% |
Matrix_437 | MYC2 | Not Available | | 54.95% |
Motif_638 | ABRE binding site motif | Not Available | | 54.93% |
Matrix_129 | ABF1 | Not Available | | 54.88% |
Matrix_145 | GBF4; AT5G44080 | Not Available | | 54.85% |
Matrix_22 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 54.81% |
Matrix_218 | TIFY2B; TIFY1 | Not Available | | 54.79% |
Matrix_516 | ANAC038; ANAC079 | Not Available | | 54.76% |
Matrix_502 | AT3G13040 | Not Available | | 54.57% |
Matrix_244 | DREB2C | Not Available | | 54.53% |
Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 54.48% |
Matrix_518 | AT2G21230 | Not Available | | 54.34% |
Motif_620 | DREB1&2 BS in rd29a | Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor | | 54.32% |
Motif_26 | GRF7 | Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A | | 54.17% |
Matrix_23 | ANAC46 | Not Available | | 54.12% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 54.11% |
Motif_512 | GLMHVCHORD | GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter | | 54.07% |
Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 54.05% |
Matrix_61 | ATCBF3 | Not Available | | 53.91% |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | | 53.82% |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | | 53.79% |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | | 53.75% |
Matrix_476 | bHLH115; bHLH34 | Not Available | | 53.71% |
Matrix_134 | ABF1 | Not Available | | 53.67% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 53.49% |
Matrix_336 | AT5G08520 | Not Available | | 53.35% |
Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 53.29% |
Matrix_415 | WRKY27 | Not Available | | 53.24% |
Matrix_507 | TCP3 | Not Available | | 53.17% |
Matrix_439 | AP3 | Not Available | | 53.13% |
Matrix_385 | DEAR4 | Not Available | | 53.10% |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | | 53.03% |
Matrix_366 | ARR14 | Not Available | | 52.94% |
Motif_574 | MYB2 binding site motif | MYB transcription factors in plants | | 52.84% |
Matrix_463 | HAT3.1 | Not Available | | 52.83% |
Matrix_17 | WRKY22 | Not Available | | 52.76% |
Matrix_203 | GATA9; GATA12 | Not Available | | 52.72% |
Matrix_285 | DDF1 | Not Available | | 52.72% |
Matrix_12 | EIN3; EIL2 | Not Available | | 52.66% |
Motif_40 | MRNASTA2CRPSBD | mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon | | 52.59% |
Motif_338 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 52.59% |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | | 52.57% |
Matrix_104 | PI | Not Available | | 52.57% |
Motif_262 | WRKY70 | Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana | | 52.35% |
Motif_158 | ZDNAFORMINGATCAB1 | Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene | | 52.22% |
Motif_82 | ACGTSEED3 | ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site | | 52.21% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 52.20% |
Motif_516 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 52.16% |
Motif_388 | CPRFPCCHS; AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 52.15% |
Matrix_159 | TEM2 | Not Available | | 52.12% |
Matrix_373 | E2FE | Not Available | | 52.01% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 52.01% |
Motif_19 | AAGACGTAGATACL12 | Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT) | | 51.99% |
Matrix_410 | TOE2 | Not Available | | 51.89% |
Matrix_90 | BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915 | Not Available | | 51.87% |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 51.78% |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | | 51.73% |
Motif_275 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | | 51.66% |
Motif_573 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 51.66% |
Matrix_319 | TEM1 | Not Available | | 51.66% |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | | 51.60% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 51.49% |
Motif_265 | GCAACREPEATZMZEIN | GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb | | 51.47% |
Motif_162 | ABRE3HVA22 | ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1 | | 51.47% |
Motif_71 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 51.46% |
Matrix_188 | SPL4 | Not Available | | 51.45% |
Matrix_433 | ATERF1 | Not Available | | 51.42% |
Matrix_87 | AT1G19000 | Not Available | | 51.36% |
Matrix_292 | FTQ4 | Not Available | | 51.35% |
Matrix_509 | LEC2 | Not Available | | 51.35% |
Matrix_165 | KNAT1 | Not Available | | 51.33% |
Matrix_175 | Dof5.7 | Not Available | | 51.31% |
Matrix_484 | ATERF13 | Not Available | | 51.29% |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 51.24% |
Motif_665 | ACEATCHS | ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system | | 51.23% |
Motif_616 | BZIP12; ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | | 51.20% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 51.16% |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | | 51.16% |
Matrix_65 | POC1; PIL1 | Not Available | | 51.15% |
Motif_101 | MYB61 | AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic regulator via a small gene network | | 51.15% |
Matrix_1 | TOE2 | Not Available | | 51.10% |
Motif_414 | ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 51.08% |
Motif_263 | RYREPEATVFLEB4; ABI3 | RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 51.08% |
Matrix_341 | HMGA | Not Available | | 51.07% |
Motif_97 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 51.05% |
Matrix_204 | WOX13 | Not Available | | 51.03% |
Matrix_106 | AT5G47390 | Not Available | | 51.00% |
Matrix_53 | MYC3 | Not Available | | 50.99% |
Matrix_422 | TOE1 | Not Available | | 50.92% |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | | 50.90% |
Matrix_109 | GBF3 | Not Available | | 50.89% |
Motif_319 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 50.88% |
Motif_32 | DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | | 50.88% |
Matrix_111 | ABF3 | Not Available | | 50.87% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 50.82% |
Matrix_339 | bHLH104 | Not Available | | 50.82% |
Motif_24 | CAMTA3 | Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance | | 50.82% |
Matrix_388 | SNZ; SMZ; TOE2 | Not Available | | 50.81% |
Motif_556 | INTRONUPPER | 5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns | | 50.81% |
Matrix_141 | AT3G25990 | Not Available | | 50.81% |
Matrix_344 | ATERF15; AT4G18450 | Not Available | | 50.68% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 50.67% |
Motif_403 | WINPSTPIIIK | Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato | | 50.64% |
Matrix_45 | DRN | Not Available | | 50.60% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 50.48% |
Matrix_6 | AT1G70000 | Not Available | | 50.46% |
Matrix_402 | TOE1 | Not Available | | 50.45% |
Motif_499 | AtMYC2 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth | | 50.43% |
Matrix_135 | ABI3 | Not Available | | 50.39% |
Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 50.34% |
Matrix_258 | WOX13 | Not Available | | 50.25% |
Matrix_180 | SPL1 | Not Available | | 50.24% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 50.24% |
Matrix_33 | SPL11; SPL10; SPL2 | Not Available | | 50.20% |
Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 50.19% |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | | 50.15% |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | | 50.15% |
Matrix_151 | ASIL1 | Not Available | | 50.10% |
Matrix_295 | ERF1 | Not Available | | 50.04% |
Matrix_328 | AT1G76580 | Not Available | | 50.03% |
Matrix_392 | ARR2 | Not Available | | 50.01% |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 50.01% |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | | 50.00% |