PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_412
Name: GL1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_407	AP1	Not Available	77.47%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	73.67%
Matrix_208	AP1	Not Available	68.20%
Matrix_132	SOC1	Not Available	66.42%
Matrix_72	CDF2	Not Available	64.48%
Matrix_290	AP2	Not Available	63.56%
Matrix_494	OBP4	Not Available	63.17%
Matrix_184	AGL15	Not Available	62.89%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	62.86%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	62.83%
Matrix_74	LFY	Not Available	62.64%
Matrix_236	CCA1	Not Available	61.95%
Matrix_97	APRR2	Not Available	61.55%
Matrix_181	Dof5.7	Not Available	61.32%
Matrix_502	AT3G13040	Not Available	61.16%
Matrix_421	GLK1	Not Available	60.97%
Matrix_227	AT1G64620	Not Available	60.70%
Matrix_249	WRKY11	Not Available	60.46%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	60.34%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	60.05%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	59.96%
Matrix_255	cdf3	Not Available	59.92%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	59.90%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	59.58%
Matrix_258	WOX13	Not Available	59.53%
Matrix_500	WRKY43	Not Available	59.46%
Motif_416	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	59.44%
Motif_692	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	59.32%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	59.15%
Matrix_447	RVE1	Not Available	59.00%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	58.87%
Matrix_67	GLK1	Not Available	58.55%
Motif_519	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	58.54%
Matrix_497	AP3	Not Available	58.50%
Matrix_396	AP3	Not Available	58.33%
Matrix_254	MYB52	Not Available	58.08%
Matrix_520	ARR14	Not Available	57.76%
Matrix_507	TCP3	Not Available	57.73%
Matrix_25	AP3	Not Available	57.54%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	57.48%
Matrix_210	ARR1	Not Available	57.44%
Matrix_501	DAG2	Not Available	57.44%
Motif_578	BBOXSITE1STPAT	10 base pair motif (site 1) within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato	57.29%
Matrix_157	LHY; RVE2	Not Available	57.20%
Matrix_324	AT2G01060	Not Available	57.15%
Matrix_51	LFY	Not Available	57.14%
Matrix_491	AT1G68670; AT3G25790	Not Available	57.10%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	57.08%
Matrix_319	TEM1	Not Available	57.06%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	57.04%
Matrix_4	ARR14	Not Available	56.90%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	56.87%
Matrix_463	HAT3.1	Not Available	56.60%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	56.51%
Matrix_392	ARR2	Not Available	56.47%
Matrix_291	EDF3	Not Available	56.46%
Matrix_523	FUSCA3	Not Available	56.46%
Matrix_361	AT1G25550	Not Available	56.42%
Matrix_167	ZAT6	Not Available	56.25%
Matrix_136	SEP3	Not Available	56.21%
Matrix_69	AT2G03500	Not Available	56.16%
Matrix_70	GATA26	Not Available	56.12%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	55.97%
Matrix_341	HMGA	Not Available	55.89%
Matrix_205	AGL15	Not Available	55.83%
Matrix_453	EIL3	Not Available	55.70%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	55.68%
Matrix_434	ARR11	Not Available	55.66%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	55.66%
Matrix_52	ZAT18	Not Available	55.66%
Matrix_159	TEM2	Not Available	55.62%
Matrix_382	AT3G04850	Not Available	55.36%
Matrix_262	ATGRP2B; CSDP2	Not Available	55.31%
Matrix_195	GATA2; GATA4	Not Available	55.30%
Matrix_143	GATA14; GATA6; GATA5	Not Available	55.22%
Matrix_37	GATA27	Not Available	55.22%
Matrix_286	GATA7	Not Available	55.16%
Matrix_16	AT3G04450; PHL1	Not Available	55.13%
Matrix_165	KNAT1	Not Available	55.07%
Matrix_99	DOF4.7	Not Available	55.03%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	54.75%
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	54.55%
Matrix_408	GATA12	Not Available	54.54%
Motif_16	-300ELEMENT	Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF	54.52%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	54.46%
Matrix_226	GATA1	Not Available	54.43%
Matrix_152	EIL1; AT5G65100	Not Available	54.38%
Matrix_128	TGA2	Not Available	54.30%
Matrix_311	TGA1	Not Available	54.29%
Matrix_505	GATA8	Not Available	54.24%
Matrix_85	SPL5	Not Available	54.05%
Matrix_162	AtPHR1	Not Available	53.95%
Motif_184	PROXBBNNAPA	prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	53.93%
Matrix_228	TGA2	Not Available	53.93%
Matrix_81	YAB1	Not Available	53.90%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	53.83%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	53.83%
Motif_410	ANAERO1CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator	53.77%
Matrix_282	bZIP60	Not Available	53.75%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	53.74%
Matrix_141	AT3G25990	Not Available	53.74%
Matrix_411	DOF5.6	Not Available	53.74%
Matrix_354	AHL12	Not Available	53.69%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	53.67%
Matrix_432	AT1G77920	Not Available	53.65%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	53.60%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	53.58%
Matrix_204	WOX13	Not Available	53.56%
Matrix_230	ARR11	Not Available	53.52%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.37%
Matrix_404	OBP4	Not Available	53.35%
Matrix_420	ANAC58	Not Available	53.32%
Matrix_328	AT1G76580	Not Available	53.27%
Matrix_160	RVE1	Not Available	53.17%
Matrix_383	CCA1	Not Available	53.13%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.09%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	53.07%
Matrix_271	AT3G16350	Not Available	53.03%
Matrix_444	AT1G19485; AT4G17950	Not Available	52.84%
Matrix_88	AHL12	Not Available	52.83%
Matrix_114	EPR1; AT3G10113	Not Available	52.78%
Matrix_54	AHL20	Not Available	52.75%
Matrix_393	REM1	Not Available	52.69%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.46%
Matrix_46	AT4G21895	Not Available	52.38%
Matrix_168	AHL25	Not Available	52.37%
Matrix_279	HRS1	Not Available	52.34%
Matrix_17	WRKY22	Not Available	52.33%
Matrix_142	ZFP8	Not Available	52.29%
Matrix_333	GATA3	Not Available	52.28%
Matrix_308	INO	Not Available	52.16%
Matrix_253	ETT	Not Available	52.13%
Matrix_336	AT5G08520	Not Available	52.04%
Matrix_125	AHL12	Not Available	52.01%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	52.00%
Matrix_93	YAB5	Not Available	51.99%
Matrix_259	AT1G50680; AT1G51120	Not Available	51.99%
Matrix_220	WRKY18	Not Available	51.94%
Matrix_12	EIN3; EIL2	Not Available	51.85%
Motif_333	GLUTEBP1OS	Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds	51.84%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	51.84%
Matrix_148	WRKY60	Not Available	51.60%
Matrix_504	WRKY40	Not Available	51.58%
Matrix_212	ATHB-12	Not Available	51.55%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	51.45%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.39%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	51.38%
Matrix_429	KAN4	Not Available	51.26%
Matrix_521	AHL20	Not Available	51.16%
Matrix_427	ZAT14	Not Available	51.15%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	51.01%
Matrix_376	WRKY45	Not Available	51.00%
Matrix_370	WRKY50; WRKY51	Not Available	50.99%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	50.96%
Matrix_293	WRKY38	Not Available	50.96%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	50.95%
Matrix_185	AHL25	Not Available	50.92%
Matrix_177	ADOF2	Not Available	50.88%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.80%
Matrix_38	SPL14	Not Available	50.76%
Matrix_384	ATWRKY17	Not Available	50.70%
Matrix_32	AHL25	Not Available	50.66%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.64%
Matrix_76	GATA10	Not Available	50.63%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	50.62%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	50.41%
Matrix_240	AT4G29000	Not Available	50.40%
Matrix_197	NAP	Not Available	50.37%
Matrix_380	ATMYR1	Not Available	50.31%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.28%
Matrix_203	GATA9; GATA12	Not Available	50.27%
Motif_520	AMYBOX1	amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley	50.23%
Matrix_519	ATDOF2.4	Not Available	50.22%
Matrix_415	WRKY27	Not Available	50.22%
Matrix_366	ARR14	Not Available	50.17%
Matrix_522	GATA11; GATA13	Not Available	50.14%
Matrix_26	ATMYB3; MYB24	Not Available	50.12%
Matrix_61	ATCBF3	Not Available	50.11%
Matrix_329	WRKY12	Not Available	50.07%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	50.05%
Motif_20	HSELIKENTGLN2	HSE-like sequence in 5' upstream region of beta-1,3-glucanase gene (GLN2) of tobacco	50.05%