Matrix_177 | ADOF2 | Not Available | | 92.15% |
Matrix_96 | TMO6 | Not Available | | 82.31% |
Matrix_519 | ATDOF2.4 | Not Available | | 81.73% |
Matrix_487 | AT1G29160 | Not Available | | 79.67% |
Matrix_99 | DOF4.7 | Not Available | | 78.95% |
Matrix_78 | AT3G45610 | Not Available | | 78.57% |
Matrix_248 | ZFP5 | Not Available | | 74.58% |
Matrix_100 | AT1G48610 | Not Available | | 72.16% |
Matrix_227 | AT1G64620 | Not Available | | 69.73% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 69.03% |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | | 66.87% |
Matrix_84 | AtGRF6 | Not Available | | 66.26% |
Matrix_35 | YAB5; YAB3 | Not Available | | 65.42% |
Matrix_112 | TBP2; TFIID-1 | Not Available | | 64.24% |
Motif_604 | EMHVCHORD | Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter | | 64.16% |
Matrix_126 | RBE | Not Available | | 63.24% |
Matrix_255 | cdf3 | Not Available | | 62.60% |
Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 62.46% |
Matrix_239 | AT5G04390 | Not Available | | 62.39% |
Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 62.23% |
Matrix_72 | CDF2 | Not Available | | 62.21% |
Matrix_137 | SPL1; SPL12 | Not Available | | 61.94% |
Matrix_379 | RHL41 | Not Available | | 61.81% |
Motif_188 | CDA1ATCAB2 | CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis | | 61.25% |
Matrix_142 | ZFP8 | Not Available | | 61.11% |
Matrix_341 | HMGA | Not Available | | 61.10% |
Matrix_262 | ATGRP2B; CSDP2 | Not Available | | 60.40% |
Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 59.89% |
Matrix_436 | AT3G49930; AZF1 | Not Available | | 59.78% |
Matrix_425 | TIFY2A | Not Available | | 59.52% |
Matrix_165 | KNAT1 | Not Available | | 58.54% |
Matrix_274 | EDF3 | Not Available | | 58.52% |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | | 58.45% |
Matrix_38 | SPL14 | Not Available | | 58.39% |
Matrix_501 | DAG2 | Not Available | | 58.31% |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | | 57.93% |
Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 57.69% |
Matrix_279 | HRS1 | Not Available | | 57.58% |
Matrix_181 | Dof5.7 | Not Available | | 57.54% |
Matrix_423 | AT3G04030 | Not Available | | 57.41% |
Matrix_512 | HAT3 | Not Available | | 57.39% |
Matrix_46 | AT4G21895 | Not Available | | 57.22% |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | | 56.96% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 56.61% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 56.57% |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | | 56.36% |
Matrix_37 | GATA27 | Not Available | | 55.99% |
Matrix_26 | ATMYB3; MYB24 | Not Available | | 55.79% |
Matrix_494 | OBP4 | Not Available | | 55.66% |
Matrix_85 | SPL5 | Not Available | | 55.44% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 55.23% |
Motif_490 | PROLAMINBOXOSGLUB1 | Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene | | 55.15% |
Matrix_336 | AT5G08520 | Not Available | | 55.13% |
Matrix_188 | SPL4 | Not Available | | 55.10% |
Matrix_347 | WOX14; WOX10 | Not Available | | 54.84% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 54.61% |
Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 54.58% |
Motif_12 | CEREGLUBOX2PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 54.40% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 54.34% |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 54.32% |
Matrix_182 | ATHB6 | Not Available | | 54.08% |
Matrix_63 | ARR10 | Not Available | | 53.96% |
Matrix_415 | WRKY27 | Not Available | | 53.66% |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | | 53.62% |
Matrix_442 | AT5G62260 | Not Available | | 53.12% |
Matrix_249 | WRKY11 | Not Available | | 53.02% |
Matrix_504 | WRKY40 | Not Available | | 53.01% |
Matrix_62 | HAT5 | Not Available | | 52.97% |
Matrix_319 | TEM1 | Not Available | | 52.92% |
Matrix_197 | NAP | Not Available | | 52.86% |
Motif_59 | CEREGLUBOX3PSLEGA | cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements | | 52.80% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 52.74% |
Motif_420 | SORLREP2AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 52.72% |
Matrix_27 | ATAIB; ATNIG1 | Not Available | | 52.57% |
Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 52.48% |
Motif_329 | AMMORESIIUDCRNIA1 | Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation | | 52.39% |
Matrix_157 | LHY; RVE2 | Not Available | | 52.35% |
Matrix_505 | GATA8 | Not Available | | 52.15% |
Motif_508 | CEREGLUBOX1PSLEGA | cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element) | | 52.12% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 52.08% |
Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | | 52.07% |
Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 52.06% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 52.04% |
Matrix_475 | AT5G64220 | Not Available | | 51.86% |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | | 51.65% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 51.61% |
Motif_190 | WUSATAg | Target sequence of WUS in the intron of AGAMOUS gene in Arabidopsis | | 51.61% |
Matrix_218 | TIFY2B; TIFY1 | Not Available | | 51.57% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 51.35% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 51.33% |
Matrix_254 | MYB52 | Not Available | | 51.25% |
Matrix_307 | RGL2; RGL3 | Not Available | | 51.11% |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | | 51.03% |
Matrix_163 | AT2G20110 | Not Available | | 51.03% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 50.97% |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | | 50.91% |
Matrix_303 | ATWOX13 | Not Available | | 50.89% |
Matrix_204 | WOX13 | Not Available | | 50.80% |
Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 50.70% |
Matrix_500 | WRKY43 | Not Available | | 50.67% |
Matrix_233 | MYC3 | Not Available | | 50.61% |
Matrix_159 | TEM2 | Not Available | | 50.34% |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | | 50.25% |
Matrix_416 | ASL5 | Not Available | | 50.17% |
Matrix_334 | AT3G23230 | Not Available | | 50.09% |