PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_409
Name: DEAR3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_50	ATERF14; AT5G43410	Not Available	86.42%
Matrix_57	WIN1; SHN3; SHN2	Not Available	84.90%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	82.85%
Matrix_355	ERF10; ERF11	Not Available	82.69%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	82.29%
Matrix_288	RAP2.3	Not Available	81.88%
Matrix_224	ERF1	Not Available	80.01%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	79.52%
Matrix_363	RAP2.3	Not Available	79.47%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	79.01%
Matrix_92	AT1G33760	Not Available	78.75%
Matrix_138	RRTF1	Not Available	78.03%
Matrix_321	HRD	Not Available	77.47%
Matrix_61	ATCBF3	Not Available	76.99%
Matrix_244	DREB2C	Not Available	76.77%
Matrix_448	ATERF6	Not Available	76.43%
Matrix_119	RRTF1	Not Available	76.23%
Matrix_91	CRF3	Not Available	76.12%
Matrix_261	ATERF-1	Not Available	75.65%
Matrix_493	AT1G22985; AT1G71130	Not Available	75.58%
Matrix_394	DREB_U	Not Available	74.93%
Matrix_433	ATERF1	Not Available	74.82%
Matrix_385	DEAR4	Not Available	74.64%
Matrix_277	RAP2.6	Not Available	74.01%
Matrix_151	ASIL1	Not Available	73.40%
Matrix_59	AT4G00238; AT4G00250	Not Available	71.86%
Matrix_374	AT5G07580; AT5G61590	Not Available	69.58%
Matrix_45	DRN	Not Available	69.16%
Matrix_506	DRNL; ATERF-4	Not Available	69.04%
Matrix_146	ORA47	Not Available	68.83%
Matrix_86	CRF5; CRF6; CRF4	Not Available	68.75%
Matrix_171	LBD3; LBD4	Not Available	68.55%
Matrix_343	AT2G33710	Not Available	68.47%
Matrix_147	ERF3; AT1G80580	Not Available	68.16%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	68.01%
Matrix_426	CRF1; CRF2	Not Available	67.41%
Matrix_484	ATERF13	Not Available	67.10%
Matrix_196	TCP20; AT5G41030	Not Available	66.99%
Matrix_462	ATERF-8	Not Available	66.96%
Matrix_272	DEAR4	Not Available	66.92%
Matrix_334	AT3G23230	Not Available	66.83%
Matrix_234	RAP2.3	Not Available	66.63%
Matrix_406	ATERF-7	Not Available	66.55%
Matrix_378	ATERF1	Not Available	66.03%
Matrix_287	ERF2	Not Available	65.85%
Matrix_329	WRKY12	Not Available	65.76%
Matrix_293	WRKY38	Not Available	65.44%
Matrix_259	AT1G50680; AT1G51120	Not Available	64.82%
Matrix_295	ERF1	Not Available	64.79%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	64.78%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	64.63%
Matrix_230	ARR11	Not Available	64.48%
Matrix_260	CAMTA3	Not Available	64.02%
Matrix_473	RRTF1	Not Available	63.98%
Matrix_456	bZIP60	Not Available	63.89%
Matrix_252	RAP2.6	Not Available	63.59%
Matrix_389	ILR3	Not Available	63.54%
Matrix_243	RAP2.12; RAP2.2	Not Available	63.35%
Matrix_253	ETT	Not Available	63.35%
Matrix_344	ATERF15; AT4G18450	Not Available	63.34%
Matrix_475	AT5G64220	Not Available	63.29%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	63.25%
Matrix_360	ORA59	Not Available	63.25%
Matrix_373	E2FE	Not Available	62.96%
Matrix_190	ATERF1	Not Available	62.91%
Matrix_101	ERF5	Not Available	62.87%
Matrix_452	MYB46	Not Available	62.82%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	62.72%
Matrix_265	NGA3	Not Available	62.62%
Matrix_193	RAV1	Not Available	62.62%
Matrix_169	E2F1	Not Available	62.57%
Matrix_23	ANAC46	Not Available	62.48%
Matrix_249	WRKY11	Not Available	62.46%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	62.29%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	62.25%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	62.10%
Matrix_350	ARR14	Not Available	62.09%
Matrix_376	WRKY45	Not Available	62.09%
Matrix_141	AT3G25990	Not Available	61.98%
Matrix_420	ANAC58	Not Available	61.84%
Matrix_97	APRR2	Not Available	61.78%
Matrix_500	WRKY43	Not Available	61.65%
Matrix_517	ERF12	Not Available	61.51%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	61.41%
Matrix_332	SPT; ALC	Not Available	61.33%
Matrix_70	GATA26	Not Available	61.23%
Matrix_5	AT5G51190; ERF104	Not Available	61.18%
Matrix_322	NST3; ANAC015; BRN2	Not Available	61.18%
Matrix_478	AT1G01250	Not Available	61.04%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	60.81%
Matrix_26	ATMYB3; MYB24	Not Available	60.80%
Matrix_387	ORA47	Not Available	60.72%
Matrix_393	REM1	Not Available	60.65%
Matrix_120	BEE2	Not Available	60.59%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	60.53%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	60.49%
Matrix_282	bZIP60	Not Available	60.37%
Matrix_362	DEAR3	Not Available	60.30%
Matrix_416	ASL5	Not Available	60.19%
Matrix_467	RAV1	Not Available	60.08%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	60.08%
Matrix_477	RAV1	Not Available	60.08%
Matrix_463	HAT3.1	Not Available	59.98%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	59.88%
Matrix_286	GATA7	Not Available	59.55%
Matrix_330	MYC2; TT8	Not Available	59.35%
Matrix_80	BIM1	Not Available	59.22%
Matrix_122	ABF1; AREB2	Not Available	59.20%
Matrix_410	TOE2	Not Available	59.10%
Matrix_308	INO	Not Available	59.03%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	59.01%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	58.99%
Matrix_323	BIM3	Not Available	58.90%
Matrix_84	AtGRF6	Not Available	58.82%
Matrix_12	EIN3; EIL2	Not Available	58.81%
Matrix_465	MYC4	Not Available	58.79%
Matrix_328	AT1G76580	Not Available	58.74%
Matrix_415	WRKY27	Not Available	58.55%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.43%
Matrix_450	SPL7	Not Available	58.43%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	58.36%
Matrix_482	AT2G25650; AT4G00270	Not Available	58.32%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	58.29%
Matrix_502	AT3G13040	Not Available	58.29%
Matrix_226	GATA1	Not Available	58.16%
Matrix_446	LBD16	Not Available	57.92%
Matrix_311	TGA1	Not Available	57.88%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	57.88%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	57.79%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	57.75%
Matrix_197	NAP	Not Available	57.43%
Matrix_142	ZFP8	Not Available	57.42%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	57.31%
Matrix_40	TCP2	Not Available	57.21%
Matrix_422	TOE1	Not Available	57.21%
Matrix_402	TOE1	Not Available	57.17%
Matrix_228	TGA2	Not Available	57.15%
Matrix_110	ATABI4; AT3G57600	Not Available	57.04%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	56.99%
Matrix_69	AT2G03500	Not Available	56.98%
Matrix_296	GBF2	Not Available	56.96%
Matrix_144	AT5G08330; AT5G23280	Not Available	56.90%
Matrix_300	bZIP68; bZIP16	Not Available	56.83%
Matrix_449	BIM2	Not Available	56.81%
Matrix_518	AT2G21230	Not Available	56.78%
Matrix_129	ABF1	Not Available	56.75%
Matrix_187	CDC5	Not Available	56.72%
Matrix_349	CDC5	Not Available	56.72%
Matrix_37	GATA27	Not Available	56.70%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	56.66%
Matrix_186	FHY3	Not Available	56.66%
Matrix_109	GBF3	Not Available	56.61%
Matrix_128	TGA2	Not Available	56.60%
Matrix_480	BES1	Not Available	56.56%
Matrix_14	ZCW32; AT5G62610	Not Available	56.48%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	56.45%
Matrix_333	GATA3	Not Available	56.38%
Matrix_1	TOE2	Not Available	56.31%
Matrix_491	AT1G68670; AT3G25790	Not Available	56.27%
Matrix_271	AT3G16350	Not Available	56.22%
Matrix_17	WRKY22	Not Available	56.21%
Matrix_53	MYC3	Not Available	56.19%
Matrix_188	SPL4	Not Available	56.16%
Matrix_152	EIL1; AT5G65100	Not Available	56.14%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	56.02%
Matrix_492	ETT	Not Available	56.00%
Matrix_38	SPL14	Not Available	55.92%
Matrix_292	FTQ4	Not Available	55.62%
Matrix_143	GATA14; GATA6; GATA5	Not Available	55.52%
Matrix_78	AT3G45610	Not Available	55.46%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.42%
Matrix_380	ATMYR1	Not Available	55.36%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	55.30%
Matrix_336	AT5G08520	Not Available	55.27%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	54.95%
Matrix_162	AtPHR1	Not Available	54.92%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	54.89%
Matrix_237	MYB55	Not Available	54.84%
Matrix_20	ANAC030; NST1; NAC066	Not Available	54.71%
Matrix_195	GATA2; GATA4	Not Available	54.70%
Matrix_233	MYC3	Not Available	54.69%
Matrix_489	RAV1	Not Available	54.45%
Matrix_148	WRKY60	Not Available	54.23%
Matrix_331	GBF1	Not Available	54.22%
Matrix_166	TGA4	Not Available	53.90%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	53.88%
Matrix_75	WRKY29	Not Available	53.82%
Matrix_221	SPL7	Not Available	53.79%
Matrix_16	AT3G04450; PHL1	Not Available	53.75%
Matrix_139	OBF5	Not Available	53.73%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	53.65%
Matrix_432	AT1G77920	Not Available	53.63%
Matrix_361	AT1G25550	Not Available	53.61%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.59%
Matrix_181	Dof5.7	Not Available	53.57%
Matrix_247	PIF3	Not Available	53.57%
Matrix_52	ZAT18	Not Available	53.49%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	53.45%
Matrix_476	bHLH115; bHLH34	Not Available	53.44%
Matrix_273	ANAC55	Not Available	53.32%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	53.31%
Matrix_370	WRKY50; WRKY51	Not Available	53.30%
Matrix_99	DOF4.7	Not Available	53.29%
Matrix_324	AT2G01060	Not Available	53.27%
Matrix_46	AT4G21895	Not Available	53.11%
Matrix_507	TCP3	Not Available	53.08%
Matrix_241	HB-1; AT5G44180	Not Available	53.05%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	52.93%
Matrix_4	ARR14	Not Available	52.86%
Matrix_3	WRKY48	Not Available	52.82%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	52.79%
Matrix_210	ARR1	Not Available	52.77%
Matrix_408	GATA12	Not Available	52.72%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.65%
Matrix_106	AT5G47390	Not Available	52.64%
Matrix_430	TOE2	Not Available	52.63%
Matrix_437	MYC2	Not Available	52.63%
Matrix_113	ABI5	Not Available	52.59%
Matrix_418	KNAT6; KNAT2	Not Available	52.45%
Matrix_505	GATA8	Not Available	52.42%
Matrix_348	AT5G51910	Not Available	52.28%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	52.25%
Matrix_274	EDF3	Not Available	52.23%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	52.06%
Matrix_313	ATMYB65; MYB33	Not Available	51.93%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.89%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	51.84%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	51.83%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	51.77%
Matrix_421	GLK1	Not Available	51.72%
Matrix_307	RGL2; RGL3	Not Available	51.61%
Matrix_320	MYC4	Not Available	51.57%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	51.56%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	51.55%
Matrix_116	ANAC55	Not Available	51.53%
Matrix_341	HMGA	Not Available	51.49%
Matrix_227	AT1G64620	Not Available	51.45%
Matrix_479	TOE1	Not Available	51.45%
Matrix_504	WRKY40	Not Available	51.43%
Matrix_150	UNE10; PIF7	Not Available	51.42%
Matrix_447	RVE1	Not Available	51.30%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	51.24%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	51.20%
Matrix_248	ZFP5	Not Available	51.08%
Matrix_212	ATHB-12	Not Available	51.06%
Matrix_206	CUC1; ANAC100	Not Available	51.00%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.97%
Matrix_60	AT1G01260; AT5G57150	Not Available	50.95%
Matrix_423	AT3G04030	Not Available	50.87%
Matrix_258	WOX13	Not Available	50.85%
Matrix_369	AT2G18300	Not Available	50.82%
Matrix_392	ARR2	Not Available	50.63%
Matrix_405	DREB2C	Not Available	50.61%
Matrix_135	ABI3	Not Available	50.57%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	50.49%
Matrix_79	FUS3	Not Available	50.37%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	50.27%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	50.25%
Matrix_209	RAP2.6	Not Available	50.25%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	50.20%
Matrix_438	AtbZIP63	Not Available	50.11%
Matrix_9	AT5G04760	Not Available	50.07%
Matrix_85	SPL5	Not Available	50.03%