PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_404
Name: OBP4
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_494	OBP4	Not Available	78.52%
Matrix_227	AT1G64620	Not Available	70.23%
Matrix_41	anac058	Not Available	69.12%
Matrix_254	MYB52	Not Available	69.10%
Matrix_72	CDF2	Not Available	68.40%
Matrix_469	NAC041; NAC083	Not Available	68.27%
Matrix_206	CUC1; ANAC100	Not Available	68.02%
Matrix_80	BIM1	Not Available	67.82%
Matrix_501	DAG2	Not Available	67.44%
Matrix_99	DOF4.7	Not Available	67.06%
Matrix_392	ARR2	Not Available	67.00%
Matrix_271	AT3G16350	Not Available	66.86%
Matrix_313	ATMYB65; MYB33	Not Available	66.73%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	66.71%
Matrix_331	GBF1	Not Available	66.40%
Matrix_109	GBF3	Not Available	65.69%
Matrix_447	RVE1	Not Available	64.93%
Matrix_418	KNAT6; KNAT2	Not Available	64.78%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	63.95%
Matrix_188	SPL4	Not Available	63.82%
Matrix_434	ARR11	Not Available	63.74%
Matrix_416	ASL5	Not Available	63.73%
Matrix_85	SPL5	Not Available	63.55%
Matrix_156	POC1	Not Available	63.46%
Matrix_336	AT5G08520	Not Available	63.34%
Matrix_424	MYB59	Not Available	63.14%
Matrix_308	INO	Not Available	62.69%
Matrix_106	AT5G47390	Not Available	62.55%
Matrix_487	AT1G29160	Not Available	62.36%
Matrix_463	HAT3.1	Not Available	62.34%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	62.32%
Matrix_286	GATA7	Not Available	62.26%
Matrix_450	SPL7	Not Available	62.25%
Matrix_195	GATA2; GATA4	Not Available	62.19%
Matrix_226	GATA1	Not Available	62.11%
Matrix_502	AT3G13040	Not Available	62.10%
Matrix_14	ZCW32; AT5G62610	Not Available	61.98%
Matrix_480	BES1	Not Available	61.84%
Matrix_12	EIN3; EIL2	Not Available	61.83%
Matrix_122	ABF1; AREB2	Not Available	61.81%
Matrix_411	DOF5.6	Not Available	61.80%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	61.77%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	61.74%
Matrix_157	LHY; RVE2	Not Available	61.57%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	61.33%
Matrix_423	AT3G04030	Not Available	61.32%
Matrix_181	Dof5.7	Not Available	61.21%
Matrix_408	GATA12	Not Available	61.15%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	61.06%
Matrix_255	cdf3	Not Available	60.99%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	60.93%
Matrix_491	AT1G68670; AT3G25790	Not Available	60.86%
Matrix_93	YAB5	Not Available	60.80%
Matrix_33	SPL11; SPL10; SPL2	Not Available	60.79%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	60.75%
Matrix_299	PFG3	Not Available	60.63%
Matrix_97	APRR2	Not Available	60.40%
Matrix_337	MYB46	Not Available	60.33%
Matrix_177	ADOF2	Not Available	60.32%
Matrix_315	MYB111	Not Available	60.05%
Matrix_328	AT1G76580	Not Available	59.97%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	59.89%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	59.71%
Matrix_88	AHL12	Not Available	59.57%
Matrix_333	GATA3	Not Available	59.53%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	59.31%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	59.26%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	59.12%
Matrix_221	SPL7	Not Available	59.11%
Matrix_273	ANAC55	Not Available	59.10%
Matrix_341	HMGA	Not Available	59.01%
Matrix_361	AT1G25550	Not Available	58.89%
Matrix_185	AHL25	Not Available	58.87%
Matrix_366	ARR14	Not Available	58.75%
Matrix_32	AHL25	Not Available	58.73%
Matrix_518	AT2G21230	Not Available	58.68%
Matrix_287	ERF2	Not Available	58.59%
Matrix_162	AtPHR1	Not Available	58.54%
Matrix_212	ATHB-12	Not Available	58.51%
Matrix_323	BIM3	Not Available	58.49%
Matrix_168	AHL25	Not Available	58.49%
Matrix_362	DEAR3	Not Available	58.47%
Matrix_6	AT1G70000	Not Available	58.47%
Matrix_16	AT3G04450; PHL1	Not Available	58.40%
Matrix_307	RGL2; RGL3	Not Available	58.32%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	58.28%
Matrix_324	AT2G01060	Not Available	58.25%
Matrix_31	SPL1	Not Available	58.24%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	58.21%
Matrix_69	AT2G03500	Not Available	58.19%
Matrix_4	ARR14	Not Available	58.16%
Matrix_210	ARR1	Not Available	58.08%
Matrix_38	SPL14	Not Available	58.08%
Matrix_354	AHL12	Not Available	58.06%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	58.04%
Matrix_209	RAP2.6	Not Available	58.04%
Matrix_120	BEE2	Not Available	57.99%
Matrix_101	ERF5	Not Available	57.87%
Matrix_453	EIL3	Not Available	57.85%
Matrix_141	AT3G25990	Not Available	57.77%
Matrix_167	ZAT6	Not Available	57.77%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	57.73%
Matrix_248	ZFP5	Not Available	57.58%
Matrix_259	AT1G50680; AT1G51120	Not Available	57.53%
Matrix_137	SPL1; SPL12	Not Available	57.48%
Matrix_449	BIM2	Not Available	57.38%
Matrix_330	MYC2; TT8	Not Available	57.34%
Matrix_465	MYC4	Not Available	57.26%
Matrix_70	GATA26	Not Available	57.20%
Matrix_300	bZIP68; bZIP16	Not Available	57.17%
Matrix_26	ATMYB3; MYB24	Not Available	56.95%
Matrix_59	AT4G00238; AT4G00250	Not Available	56.87%
Matrix_104	PI	Not Available	56.85%
Matrix_296	GBF2	Not Available	56.76%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	56.70%
Matrix_475	AT5G64220	Not Available	56.49%
Matrix_204	WOX13	Not Available	56.49%
Matrix_67	GLK1	Not Available	56.48%
Matrix_435	ATHB51	Not Available	56.48%
Matrix_8	KAN1	Not Available	56.47%
Matrix_431	ATHB21; HB-3	Not Available	56.39%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	56.31%
Matrix_47	AtMYB77	Not Available	56.28%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	56.28%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	56.20%
Matrix_152	EIL1; AT5G65100	Not Available	56.20%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.18%
Matrix_125	AHL12	Not Available	56.15%
Matrix_142	ZFP8	Not Available	56.05%
Matrix_380	ATMYR1	Not Available	56.02%
Matrix_151	ASIL1	Not Available	55.99%
Matrix_461	ATHB12	Not Available	55.98%
Matrix_391	AHL20	Not Available	55.87%
Matrix_350	ARR14	Not Available	55.86%
Matrix_460	NAM; anac025; ATNAC2	Not Available	55.75%
Matrix_114	EPR1; AT3G10113	Not Available	55.64%
Matrix_71	ATHB7	Not Available	55.50%
Matrix_374	AT5G07580; AT5G61590	Not Available	55.42%
Matrix_230	ARR11	Not Available	55.31%
Matrix_203	GATA9; GATA12	Not Available	55.27%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	55.22%
Matrix_521	AHL20	Not Available	55.20%
Matrix_321	HRD	Not Available	55.20%
Motif_208	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	55.19%
Matrix_17	WRKY22	Not Available	55.07%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	54.99%
Matrix_444	AT1G19485; AT4G17950	Not Available	54.98%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.91%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	54.88%
Matrix_211	MYB3	Not Available	54.77%
Matrix_78	AT3G45610	Not Available	54.77%
Matrix_46	AT4G21895	Not Available	54.74%
Matrix_389	ILR3	Not Available	54.59%
Matrix_441	ATHB5	Not Available	54.55%
Matrix_302	HAT1; HAT2	Not Available	54.50%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	54.49%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	54.45%
Matrix_129	ABF1	Not Available	54.30%
Motif_508	CEREGLUBOX1PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	54.26%
Matrix_213	ATHB22	Not Available	54.25%
Matrix_20	ANAC030; NST1; NAC066	Not Available	54.23%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	54.17%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	54.14%
Matrix_54	AHL20	Not Available	54.07%
Matrix_100	AT1G48610	Not Available	54.06%
Matrix_75	WRKY29	Not Available	53.93%
Matrix_343	AT2G33710	Not Available	53.90%
Motif_424	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.82%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	53.75%
Matrix_62	HAT5	Not Available	53.65%
Motif_212	GARE2OSREP1	Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice	53.64%
Matrix_249	WRKY11	Not Available	53.58%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.49%
Matrix_182	ATHB6	Not Available	53.43%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.42%
Matrix_412	GL1	Not Available	53.35%
Matrix_116	ANAC55	Not Available	53.31%
Matrix_440	LFY	Not Available	53.30%
Matrix_233	MYC3	Not Available	53.26%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	53.20%
Matrix_415	WRKY27	Not Available	53.16%
Matrix_132	SOC1	Not Available	53.15%
Matrix_309	FLC	Not Available	53.13%
Matrix_150	UNE10; PIF7	Not Available	53.07%
Matrix_3	WRKY48	Not Available	52.86%
Matrix_21	HSFC1	Not Available	52.80%
Matrix_37	GATA27	Not Available	52.80%
Matrix_495	HD-GL2-1; ANL2	Not Available	52.77%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.76%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	52.67%
Matrix_311	TGA1	Not Available	52.57%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	52.57%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	52.54%
Matrix_126	RBE	Not Available	52.50%
Matrix_81	YAB1	Not Available	52.46%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	52.45%
Matrix_359	FLC	Not Available	52.42%
Matrix_379	RHL41	Not Available	52.41%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	52.40%
Matrix_225	MYB52	Not Available	52.34%
Matrix_258	WOX13	Not Available	52.34%
Matrix_493	AT1G22985; AT1G71130	Not Available	52.33%
Matrix_60	AT1G01260; AT5G57150	Not Available	52.20%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	52.18%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	52.18%
Matrix_505	GATA8	Not Available	52.14%
Matrix_241	HB-1; AT5G44180	Not Available	52.13%
Matrix_7	PIF4	Not Available	52.12%
Matrix_96	TMO6	Not Available	52.10%
Matrix_234	RAP2.3	Not Available	52.01%
Matrix_171	LBD3; LBD4	Not Available	51.95%
Matrix_382	AT3G04850	Not Available	51.90%
Matrix_320	MYC4	Not Available	51.88%
Motif_344	MSACRCYM	MSA (M-specific activator) motif in Catharanthus roseus B-type cyclin (CYM) promoter; Essential for M phase-specific expression; Found at -66 to -58	51.84%
Matrix_455	MYB111	Not Available	51.81%
Matrix_91	CRF3	Not Available	51.78%
Matrix_178	HSFB2A	Not Available	51.67%
Matrix_136	SEP3	Not Available	51.66%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.63%
Matrix_500	WRKY43	Not Available	51.62%
Matrix_197	NAP	Not Available	51.58%
Motif_27	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.53%
Matrix_63	ARR10	Not Available	51.53%
Matrix_489	RAV1	Not Available	51.52%
Matrix_145	GBF4; AT5G44080	Not Available	51.50%
Matrix_239	AT5G04390	Not Available	51.49%
Matrix_437	MYC2	Not Available	51.48%
Matrix_483	ICU4	Not Available	51.46%
Matrix_503	AT2G37430; AT3G53600	Not Available	51.34%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.33%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	51.32%
Matrix_261	ATERF-1	Not Available	51.29%
Motif_631	MARARS	ARS element; Motif found in SAR (MAR)	51.29%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	51.26%
Matrix_279	HRS1	Not Available	51.24%
Matrix_186	FHY3	Not Available	51.19%
Matrix_456	bZIP60	Not Available	51.16%
Matrix_370	WRKY50; WRKY51	Not Available	51.14%
Matrix_55	PIF3	Not Available	51.08%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.05%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	51.03%
Matrix_420	ANAC58	Not Available	50.99%
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	50.95%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	50.89%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	50.89%
Matrix_180	SPL1	Not Available	50.88%
Matrix_346	AtMYB70; MYB73	Not Available	50.85%
Matrix_52	ZAT18	Not Available	50.81%
Motif_141	BP5OSWX	OsBP-5 (a MYC protein) binding site in Wx promoter	50.78%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	50.73%
Matrix_322	NST3; ANAC015; BRN2	Not Available	50.67%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.67%
Matrix_153	AP2	Not Available	50.66%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	50.63%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.61%
Motif_604	EMHVCHORD	Endosperm motif (EM) found in the promoter of barley c-hordein gene; Involved in the nitrogen response of c-hordein promoter	50.60%
Motif_349	QARBNEXTA	QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene	50.51%
Matrix_352	LEC2	Not Available	50.50%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.48%
Matrix_384	ATWRKY17	Not Available	50.46%
Motif_626	ACGTTBOX	T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF	50.43%
Matrix_472	ZN_C2_H2	Not Available	50.39%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.39%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	50.37%
Matrix_519	ATDOF2.4	Not Available	50.24%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	50.18%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	50.18%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	50.16%
Motif_12	CEREGLUBOX2PSLEGA	cereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)	50.14%
Matrix_169	E2F1	Not Available	50.12%
Matrix_507	TCP3	Not Available	50.12%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	50.11%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	50.09%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	50.00%