Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | | 75.63% |
Matrix_479 | TOE1 | Not Available | | 71.22% |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 69.98% |
Matrix_430 | TOE2 | Not Available | | 68.84% |
Matrix_167 | ZAT6 | Not Available | | 67.44% |
Matrix_116 | ANAC55 | Not Available | | 63.62% |
Matrix_20 | ANAC030; NST1; NAC066 | Not Available | | 61.90% |
Matrix_265 | NGA3 | Not Available | | 60.80% |
Matrix_193 | RAV1 | Not Available | | 60.80% |
Motif_416 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 60.78% |
Motif_423 | MYB2 | Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 60.43% |
Matrix_141 | AT3G25990 | Not Available | | 60.41% |
Matrix_362 | DEAR3 | Not Available | | 60.12% |
Matrix_420 | ANAC58 | Not Available | | 59.90% |
Matrix_273 | ANAC55 | Not Available | | 59.74% |
Motif_519 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 59.45% |
Matrix_208 | AP1 | Not Available | | 58.96% |
Matrix_25 | AP3 | Not Available | | 58.84% |
Motif_138 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 58.81% |
Motif_265 | GCAACREPEATZMZEIN | GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb | | 58.37% |
Matrix_412 | GL1 | Not Available | | 58.33% |
Matrix_129 | ABF1 | Not Available | | 58.33% |
Matrix_410 | TOE2 | Not Available | | 58.17% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 57.91% |
Matrix_203 | GATA9; GATA12 | Not Available | | 57.85% |
Matrix_81 | YAB1 | Not Available | | 57.65% |
Motif_541 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 57.45% |
Motif_590 | MYB3 binding site motif | Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses | | 57.25% |
Matrix_452 | MYB46 | Not Available | | 57.20% |
Motif_377 | SURE2STPAT21 | Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | | 56.60% |
Matrix_23 | ANAC46 | Not Available | | 56.38% |
Matrix_120 | BEE2 | Not Available | | 56.22% |
Motif_692 | MYB80 | The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana | | 56.18% |
Matrix_323 | BIM3 | Not Available | | 55.84% |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | | 55.80% |
Matrix_122 | ABF1; AREB2 | Not Available | | 55.78% |
Matrix_67 | GLK1 | Not Available | | 55.58% |
Matrix_10 | STY1 | Not Available | | 55.52% |
Matrix_333 | GATA3 | Not Available | | 55.52% |
Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 55.44% |
Matrix_277 | RAP2.6 | Not Available | | 55.23% |
Matrix_158 | AT1G03040; LRL1; UNE12; LRL2; LRL3 | Not Available | | 55.11% |
Motif_535 | ACIPVPAL2 | ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene | | 55.03% |
Matrix_447 | RVE1 | Not Available | | 55.02% |
Matrix_449 | BIM2 | Not Available | | 54.90% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 54.87% |
Matrix_200 | PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815 | Not Available | | 54.81% |
Matrix_472 | ZN_C2_H2 | Not Available | | 54.76% |
Matrix_463 | HAT3.1 | Not Available | | 54.71% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 54.62% |
Matrix_465 | MYC4 | Not Available | | 54.58% |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | | 54.51% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 54.49% |
Matrix_204 | WOX13 | Not Available | | 54.45% |
Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 54.38% |
Matrix_442 | AT5G62260 | Not Available | | 54.22% |
Matrix_319 | TEM1 | Not Available | | 54.21% |
Matrix_330 | MYC2; TT8 | Not Available | | 54.16% |
Matrix_507 | TCP3 | Not Available | | 54.13% |
Matrix_93 | YAB5 | Not Available | | 54.12% |
Matrix_255 | cdf3 | Not Available | | 54.09% |
Matrix_72 | CDF2 | Not Available | | 53.81% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 53.77% |
Matrix_291 | EDF3 | Not Available | | 53.50% |
Matrix_402 | TOE1 | Not Available | | 53.50% |
Motif_665 | ACEATCHS | ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system | | 53.41% |
Matrix_434 | ARR11 | Not Available | | 53.28% |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 53.27% |
Motif_166 | RAP2.2 | Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves | | 53.18% |
Matrix_174 | ZAT2 | Not Available | | 53.14% |
Matrix_151 | ASIL1 | Not Available | | 53.13% |
Matrix_92 | AT1G33760 | Not Available | | 53.12% |
Motif_209 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 52.98% |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 52.98% |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | | 52.98% |
Motif_315 | AtSR1 | A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants | | 52.98% |
Matrix_169 | E2F1 | Not Available | | 52.87% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 52.86% |
Matrix_290 | AP2 | Not Available | | 52.78% |
Matrix_159 | TEM2 | Not Available | | 52.77% |
Matrix_21 | HSFC1 | Not Available | | 52.69% |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | | 52.54% |
Matrix_186 | FHY3 | Not Available | | 52.47% |
Matrix_297 | TCP15 | Not Available | | 52.45% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 52.45% |
Matrix_232 | TCP23 | Not Available | | 52.37% |
Matrix_486 | MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 52.32% |
Motif_254 | MYB46; MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 52.32% |
Matrix_400 | MYB46 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 52.32% |
Matrix_389 | ILR3 | Not Available | | 52.24% |
Matrix_70 | GATA26 | Not Available | | 52.05% |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | | 51.99% |
Matrix_178 | HSFB2A | Not Available | | 51.94% |
Matrix_407 | AP1 | Not Available | | 51.80% |
Matrix_41 | anac058 | Not Available | | 51.80% |
Matrix_87 | AT1G19000 | Not Available | | 51.73% |
Matrix_88 | AHL12 | Not Available | | 51.68% |
Matrix_171 | LBD3; LBD4 | Not Available | | 51.66% |
Matrix_355 | ERF10; ERF11 | Not Available | | 51.66% |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | | 51.63% |
Matrix_181 | Dof5.7 | Not Available | | 51.60% |
Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 51.52% |
Matrix_128 | TGA2 | Not Available | | 51.39% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 51.35% |
Matrix_505 | GATA8 | Not Available | | 51.31% |
Matrix_321 | HRD | Not Available | | 51.20% |
Matrix_354 | AHL12 | Not Available | | 51.18% |
Matrix_384 | ATWRKY17 | Not Available | | 51.16% |
Motif_89 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 51.16% |
Matrix_383 | CCA1 | Not Available | | 51.08% |
Matrix_498 | AT2G28710; AT3G46070; AT3G46080; ZAT7 | Not Available | | 51.07% |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | | 51.07% |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | | 51.07% |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | | 51.05% |
Matrix_221 | SPL7 | Not Available | | 50.95% |
Matrix_456 | bZIP60 | Not Available | | 50.89% |
Motif_25 | GLUTAACAOS | glutelin common motif; AACA motif; Conserved in all member of rice glutelin | | 50.89% |
Matrix_501 | DAG2 | Not Available | | 50.86% |
Matrix_352 | LEC2 | Not Available | | 50.83% |
Matrix_440 | LFY | Not Available | | 50.81% |
Matrix_101 | ERF5 | Not Available | | 50.78% |
Motif_683 | AtMYB2 BS in RD22 | Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression | | 50.74% |
Motif_470 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.74% |
Matrix_188 | SPL4 | Not Available | | 50.72% |
Matrix_244 | DREB2C | Not Available | | 50.70% |
Matrix_160 | RVE1 | Not Available | | 50.67% |
Motif_184 | PROXBBNNAPA | prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | | 50.66% |
Motif_28 | POLLEN2LELAT52 | One of two co-dependent regulatory elements responsible for pollen specific activation of tomato lat52 gene; Found at -60 to -52 region; See POLLEN1LELAT52; AGAAA and TCCACCATA are required for pollen specific expression | | 50.56% |
Matrix_311 | TGA1 | Not Available | | 50.55% |
Matrix_308 | INO | Not Available | | 50.53% |
Motif_107 | O2F2BE2S1 | opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome | | 50.45% |
Matrix_17 | WRKY22 | Not Available | | 50.45% |
Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 50.38% |
Matrix_258 | WOX13 | Not Available | | 50.35% |
Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 50.33% |
Matrix_227 | AT1G64620 | Not Available | | 50.30% |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 50.23% |
Matrix_61 | ATCBF3 | Not Available | | 50.20% |
Matrix_416 | ASL5 | Not Available | | 50.17% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 50.16% |
Motif_564 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.15% |
Motif_19 | AAGACGTAGATACL12 | Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT) | | 50.15% |
Matrix_236 | CCA1 | Not Available | | 50.14% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 50.11% |
Matrix_46 | AT4G21895 | Not Available | | 50.10% |
Motif_614 | MYBGAHV | Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression | | 50.08% |
Matrix_286 | GATA7 | Not Available | | 50.06% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 50.03% |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | | 50.01% |
Motif_311 | ANAC019; ANAC055; ANAC072 | Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter | | 50.01% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 50.01% |