PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_393
Name: REM1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_456	bZIP60	Not Available	67.83%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	65.51%
Matrix_336	AT5G08520	Not Available	64.52%
Matrix_188	SPL4	Not Available	63.52%
Matrix_97	APRR2	Not Available	62.92%
Matrix_319	TEM1	Not Available	62.87%
Matrix_4	ARR14	Not Available	61.98%
Matrix_221	SPL7	Not Available	61.97%
Matrix_141	AT3G25990	Not Available	61.94%
Matrix_210	ARR1	Not Available	61.88%
Matrix_259	AT1G50680; AT1G51120	Not Available	61.55%
Matrix_159	TEM2	Not Available	61.46%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	61.44%
Matrix_273	ANAC55	Not Available	61.36%
Matrix_491	AT1G68670; AT3G25790	Not Available	61.14%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	61.06%
Matrix_409	DEAR3	Not Available	60.65%
Matrix_282	bZIP60	Not Available	60.56%
Matrix_69	AT2G03500	Not Available	60.37%
Matrix_452	MYB46	Not Available	60.00%
Matrix_288	RAP2.3	Not Available	59.92%
Matrix_157	LHY; RVE2	Not Available	59.81%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	59.81%
Matrix_162	AtPHR1	Not Available	59.60%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	59.59%
Matrix_291	EDF3	Not Available	59.46%
Matrix_9	AT5G04760	Not Available	59.34%
Matrix_258	WOX13	Not Available	58.95%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	58.83%
Matrix_307	RGL2; RGL3	Not Available	58.81%
Matrix_16	AT3G04450; PHL1	Not Available	58.59%
Matrix_296	GBF2	Not Available	58.45%
Matrix_361	AT1G25550	Not Available	58.42%
Matrix_324	AT2G01060	Not Available	58.10%
Matrix_228	TGA2	Not Available	58.09%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	58.06%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	58.05%
Matrix_26	ATMYB3; MYB24	Not Available	58.03%
Matrix_120	BEE2	Not Available	58.00%
Matrix_152	EIL1; AT5G65100	Not Available	57.97%
Matrix_167	ZAT6	Not Available	57.96%
Motif_578	BBOXSITE1STPAT	10 base pair motif (site 1) within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato	57.90%
Matrix_450	SPL7	Not Available	57.84%
Matrix_23	ANAC46	Not Available	57.82%
Matrix_151	ASIL1	Not Available	57.80%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	57.78%
Matrix_70	GATA26	Not Available	57.74%
Matrix_421	GLK1	Not Available	57.73%
Matrix_300	bZIP68; bZIP16	Not Available	57.71%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	57.67%
Matrix_50	ATERF14; AT5G43410	Not Available	57.62%
Matrix_355	ERF10; ERF11	Not Available	57.45%
Matrix_227	AT1G64620	Not Available	57.44%
Matrix_137	SPL1; SPL12	Not Available	57.23%
Matrix_249	WRKY11	Not Available	57.19%
Matrix_389	ILR3	Not Available	57.19%
Matrix_420	ANAC58	Not Available	57.18%
Matrix_439	AP3	Not Available	57.13%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	57.05%
Matrix_212	ATHB-12	Not Available	56.72%
Matrix_322	NST3; ANAC015; BRN2	Not Available	56.71%
Matrix_444	AT1G19485; AT4G17950	Not Available	56.71%
Matrix_92	AT1G33760	Not Available	56.71%
Matrix_500	WRKY43	Not Available	56.56%
Matrix_244	DREB2C	Not Available	56.53%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	56.23%
Matrix_323	BIM3	Not Available	56.22%
Motif_683	AtMYB2 BS in RD22	Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression	56.21%
Matrix_328	AT1G76580	Not Available	56.21%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	56.18%
Matrix_332	SPT; ALC	Not Available	56.09%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	56.05%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	56.04%
Matrix_57	WIN1; SHN3; SHN2	Not Available	56.04%
Matrix_138	RRTF1	Not Available	56.00%
Matrix_129	ABF1	Not Available	55.84%
Matrix_182	ATHB6	Not Available	55.75%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	55.69%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	55.68%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	55.64%
Matrix_465	MYC4	Not Available	55.61%
Matrix_106	AT5G47390	Not Available	55.59%
Matrix_46	AT4G21895	Not Available	55.59%
Matrix_308	INO	Not Available	55.59%
Matrix_363	RAP2.3	Not Available	55.57%
Matrix_330	MYC2; TT8	Not Available	55.44%
Matrix_449	BIM2	Not Available	55.40%
Matrix_204	WOX13	Not Available	55.40%
Matrix_385	DEAR4	Not Available	55.35%
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	55.33%
Matrix_139	OBF5	Not Available	55.32%
Matrix_160	RVE1	Not Available	55.26%
Matrix_271	AT3G16350	Not Available	55.17%
Matrix_522	GATA11; GATA13	Not Available	55.15%
Matrix_72	CDF2	Not Available	55.14%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	55.13%
Matrix_20	ANAC030; NST1; NAC066	Not Available	55.13%
Matrix_114	EPR1; AT3G10113	Not Available	55.07%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	55.07%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	55.06%
Matrix_8	KAN1	Not Available	55.05%
Matrix_383	CCA1	Not Available	54.92%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	54.90%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	54.83%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	54.83%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.75%
Matrix_115	AGL15	Not Available	54.70%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	54.62%
Matrix_333	GATA3	Not Available	54.54%
Matrix_394	DREB_U	Not Available	54.47%
Matrix_269	FHY3/FAR1	Not Available	54.46%
Matrix_489	RAV1	Not Available	54.38%
Matrix_116	ANAC55	Not Available	54.36%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	54.26%
Matrix_76	GATA10	Not Available	54.22%
Matrix_10	STY1	Not Available	54.21%
Motif_557	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.01%
Matrix_87	AT1G19000	Not Available	53.96%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.96%
Matrix_37	GATA27	Not Available	53.93%
Matrix_233	MYC3	Not Available	53.93%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	53.77%
Matrix_247	PIF3	Not Available	53.74%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	53.66%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	53.64%
Matrix_418	KNAT6; KNAT2	Not Available	53.59%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.57%
Matrix_354	AHL12	Not Available	53.51%
Matrix_196	TCP20; AT5G41030	Not Available	53.48%
Matrix_447	RVE1	Not Available	53.47%
Matrix_495	HD-GL2-1; ANL2	Not Available	53.45%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	53.28%
Matrix_236	CCA1	Not Available	53.26%
Motif_554	AtLHY; AtCCA1	LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms	53.25%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	53.15%
Matrix_93	YAB5	Not Available	53.13%
Matrix_463	HAT3.1	Not Available	53.12%
Matrix_437	MYC2	Not Available	53.08%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	53.01%
Matrix_142	ZFP8	Not Available	53.00%
Matrix_6	AT1G70000	Not Available	52.94%
Matrix_392	ARR2	Not Available	52.89%
Matrix_99	DOF4.7	Not Available	52.85%
Matrix_423	AT3G04030	Not Available	52.83%
Matrix_476	bHLH115; bHLH34	Not Available	52.82%
Matrix_193	RAV1	Not Available	52.74%
Matrix_265	NGA3	Not Available	52.74%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	52.71%
Matrix_177	ADOF2	Not Available	52.70%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	52.65%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	52.62%
Matrix_261	ATERF-1	Not Available	52.58%
Matrix_119	RRTF1	Not Available	52.46%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.46%
Matrix_411	DOF5.6	Not Available	52.41%
Matrix_341	HMGA	Not Available	52.41%
Matrix_171	LBD3; LBD4	Not Available	52.29%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	52.29%
Matrix_61	ATCBF3	Not Available	52.24%
Matrix_374	AT5G07580; AT5G61590	Not Available	52.21%
Matrix_63	ARR10	Not Available	52.21%
Matrix_91	CRF3	Not Available	52.18%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	52.12%
Matrix_408	GATA12	Not Available	52.08%
Matrix_84	AtGRF6	Not Available	52.08%
Matrix_101	ERF5	Not Available	51.81%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.74%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	51.74%
Matrix_448	ATERF6	Not Available	51.72%
Matrix_78	AT3G45610	Not Available	51.63%
Matrix_38	SPL14	Not Available	51.62%
Matrix_12	EIN3; EIL2	Not Available	51.58%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	51.48%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	51.44%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.44%
Matrix_206	CUC1; ANAC100	Not Available	51.40%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	51.38%
Motif_73	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	51.34%
Matrix_224	ERF1	Not Available	51.26%
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	51.19%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	51.17%
Matrix_181	Dof5.7	Not Available	51.17%
Matrix_433	ATERF1	Not Available	51.16%
Matrix_197	NAP	Not Available	51.15%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	51.14%
Matrix_287	ERF2	Not Available	51.09%
Matrix_382	AT3G04850	Not Available	51.07%
Matrix_125	AHL12	Not Available	51.07%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	50.82%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	50.81%
Matrix_255	cdf3	Not Available	50.75%
Matrix_286	GATA7	Not Available	50.67%
Matrix_427	ZAT14	Not Available	50.65%
Matrix_14	ZCW32; AT5G62610	Not Available	50.56%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.51%
Matrix_260	CAMTA3	Not Available	50.51%
Motif_319	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.45%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.45%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	50.42%
Motif_163	BOXCPSAS1	Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1	50.40%
Matrix_487	AT1G29160	Not Available	50.38%
Motif_649	2SSEEDPROTBANAPA	Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter	50.34%
Matrix_128	TGA2	Not Available	50.32%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.31%
Matrix_415	WRKY27	Not Available	50.30%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	50.28%
Matrix_62	HAT5	Not Available	50.26%
Motif_564	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.25%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	50.25%
Matrix_457	TGA2	Not Available	50.23%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	50.22%
Matrix_320	MYC4	Not Available	50.19%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	50.19%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	50.18%
Matrix_195	GATA2; GATA4	Not Available	50.14%
Matrix_343	AT2G33710	Not Available	50.13%
Matrix_281	TCP13	Not Available	50.11%
Matrix_493	AT1G22985; AT1G71130	Not Available	50.07%
Matrix_494	OBP4	Not Available	50.05%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	50.04%