PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_367
Name: REM1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_260	CAMTA3	Not Available	68.16%
Matrix_427	ZAT14	Not Available	66.17%
Matrix_170	AT5G47660	Not Available	62.33%
Matrix_31	SPL1	Not Available	61.00%
Matrix_12	EIN3; EIL2	Not Available	60.92%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	60.67%
Matrix_500	WRKY43	Not Available	59.93%
Matrix_390	GT-1	Not Available	59.86%
Matrix_253	ETT	Not Available	59.29%
Matrix_293	WRKY38	Not Available	58.70%
Matrix_230	ARR11	Not Available	58.47%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.43%
Matrix_380	ATMYR1	Not Available	58.43%
Matrix_415	WRKY27	Not Available	58.29%
Matrix_329	WRKY12	Not Available	58.27%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	58.15%
Matrix_130	TCP16	Not Available	58.00%
Matrix_450	SPL7	Not Available	57.63%
Matrix_52	ZAT18	Not Available	57.52%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	57.28%
Matrix_308	INO	Not Available	57.27%
Matrix_502	AT3G13040	Not Available	57.16%
Motif_390	GLUTEBOX2OSGT2	Box II of rice glutelin Gt2 gene family; nuclear factor binding site	57.07%
Matrix_249	WRKY11	Not Available	57.05%
Matrix_332	SPT; ALC	Not Available	56.89%
Matrix_197	NAP	Not Available	56.86%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.85%
Matrix_274	EDF3	Not Available	56.82%
Matrix_470	WRKY18	Not Available	56.69%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	56.61%
Matrix_397	GT2L	Not Available	56.58%
Matrix_53	MYC3	Not Available	56.55%
Matrix_38	SPL14	Not Available	56.13%
Matrix_174	ZAT2	Not Available	55.96%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	55.94%
Matrix_504	WRKY40	Not Available	55.61%
Motif_669	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	55.60%
Matrix_350	ARR14	Not Available	55.45%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	55.44%
Matrix_307	RGL2; RGL3	Not Available	55.05%
Matrix_187	CDC5	Not Available	54.83%
Matrix_349	CDC5	Not Available	54.83%
Matrix_37	GATA27	Not Available	54.80%
Matrix_289	WRKY25	Not Available	54.77%
Matrix_106	AT5G47390	Not Available	54.71%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	54.67%
Matrix_423	AT3G04030	Not Available	54.56%
Matrix_376	WRKY45	Not Available	54.51%
Matrix_70	GATA26	Not Available	54.33%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	54.08%
Matrix_113	ABI5	Not Available	54.08%
Matrix_169	E2F1	Not Available	53.86%
Matrix_175	Dof5.7	Not Available	53.86%
Matrix_271	AT3G16350	Not Available	53.82%
Matrix_84	AtGRF6	Not Available	53.73%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	53.71%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	53.63%
Matrix_85	SPL5	Not Available	53.56%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	53.27%
Matrix_233	MYC3	Not Available	53.16%
Matrix_226	GATA1	Not Available	53.06%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.02%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	52.97%
Matrix_447	RVE1	Not Available	52.96%
Matrix_370	WRKY50; WRKY51	Not Available	52.94%
Matrix_3	WRKY48	Not Available	52.92%
Matrix_505	GATA8	Not Available	52.88%
Matrix_6	AT1G70000	Not Available	52.81%
Matrix_340	HSFC1	Not Available	52.73%
Motif_442	GT2OSPHYA	GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter	52.69%
Matrix_220	WRKY18	Not Available	52.61%
Matrix_10	STY1	Not Available	52.58%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	52.54%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	52.53%
Matrix_422	TOE1	Not Available	52.50%
Matrix_93	YAB5	Not Available	52.35%
Matrix_166	TGA4	Not Available	52.27%
Matrix_286	GATA7	Not Available	52.24%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.23%
Matrix_355	ERF10; ERF11	Not Available	52.16%
Matrix_102	WRKY21	Not Available	52.15%
Matrix_311	TGA1	Not Available	52.15%
Matrix_489	RAV1	Not Available	52.11%
Matrix_472	ZN_C2_H2	Not Available	52.10%
Matrix_328	AT1G76580	Not Available	52.05%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	51.98%
Matrix_1	TOE2	Not Available	51.93%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.67%
Motif_558	BOXIIPCCHS	Core of Box II/G box found in the parsley chs genes; Essential for light regulation	51.54%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	51.28%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	51.16%
Matrix_110	ATABI4; AT3G57600	Not Available	51.07%
Matrix_335	HSFB2A	Not Available	51.05%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	51.01%
Matrix_352	LEC2	Not Available	50.97%
Matrix_150	UNE10; PIF7	Not Available	50.94%
Matrix_33	SPL11; SPL10; SPL2	Not Available	50.87%
Matrix_341	HMGA	Not Available	50.84%
Matrix_75	WRKY29	Not Available	50.84%
Motif_465	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	50.79%
Matrix_116	ANAC55	Not Available	50.79%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.78%
Matrix_212	ATHB-12	Not Available	50.71%
Matrix_180	SPL1	Not Available	50.68%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	50.52%
Matrix_302	HAT1; HAT2	Not Available	50.46%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	50.42%
Matrix_60	AT1G01260; AT5G57150	Not Available	50.41%
Matrix_401	MYB55	Not Available	50.33%
Motif_308	SP8BFIBSP8AIB	One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.32%
Matrix_437	MYC2	Not Available	50.22%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	50.22%
Matrix_394	DREB_U	Not Available	50.21%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	50.17%
Motif_226	E2F1OSPCNA	re2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue	50.09%
Matrix_492	ETT	Not Available	50.08%
Matrix_9	AT5G04760	Not Available	50.08%
Matrix_195	GATA2; GATA4	Not Available	50.08%
Matrix_40	TCP2	Not Available	50.04%
Matrix_17	WRKY22	Not Available	50.03%
Matrix_188	SPL4	Not Available	50.02%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	50.01%
Matrix_152	EIL1; AT5G65100	Not Available	50.00%