PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_363
Name: RAP2.3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_138	RRTF1	Not Available	90.37%
Matrix_119	RRTF1	Not Available	89.91%
Matrix_288	RAP2.3	Not Available	89.16%
Matrix_224	ERF1	Not Available	86.27%
Matrix_50	ATERF14; AT5G43410	Not Available	85.50%
Matrix_277	RAP2.6	Not Available	85.37%
Matrix_355	ERF10; ERF11	Not Available	82.25%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	81.39%
Matrix_409	DEAR3	Not Available	79.47%
Matrix_448	ATERF6	Not Available	78.35%
Matrix_57	WIN1; SHN3; SHN2	Not Available	77.93%
Matrix_433	ATERF1	Not Available	76.65%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	76.31%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	74.91%
Matrix_86	CRF5; CRF6; CRF4	Not Available	74.32%
Matrix_295	ERF1	Not Available	74.10%
Matrix_244	DREB2C	Not Available	73.52%
Matrix_91	CRF3	Not Available	73.39%
Matrix_261	ATERF-1	Not Available	73.11%
Matrix_493	AT1G22985; AT1G71130	Not Available	73.08%
Matrix_426	CRF1; CRF2	Not Available	72.99%
Matrix_234	RAP2.3	Not Available	72.81%
Matrix_61	ATCBF3	Not Available	72.59%
Matrix_473	RRTF1	Not Available	72.02%
Matrix_45	DRN	Not Available	72.00%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	71.90%
Matrix_378	ATERF1	Not Available	71.54%
Matrix_147	ERF3; AT1G80580	Not Available	70.95%
Matrix_484	ATERF13	Not Available	70.54%
Matrix_343	AT2G33710	Not Available	70.48%
Matrix_506	DRNL; ATERF-4	Not Available	70.40%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	70.12%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	69.90%
Matrix_360	ORA59	Not Available	69.77%
Matrix_92	AT1G33760	Not Available	69.63%
Matrix_394	DREB_U	Not Available	69.38%
Matrix_385	DEAR4	Not Available	68.88%
Matrix_321	HRD	Not Available	68.51%
Matrix_462	ATERF-8	Not Available	68.43%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	68.05%
Matrix_146	ORA47	Not Available	67.96%
Matrix_169	E2F1	Not Available	67.72%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	67.46%
Matrix_252	RAP2.6	Not Available	67.13%
Matrix_272	DEAR4	Not Available	67.02%
Matrix_406	ATERF-7	Not Available	66.75%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	66.50%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	66.35%
Matrix_517	ERF12	Not Available	65.54%
Matrix_151	ASIL1	Not Available	65.44%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	65.38%
Matrix_373	E2FE	Not Available	65.07%
Matrix_387	ORA47	Not Available	64.97%
Matrix_420	ANAC58	Not Available	64.63%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	64.10%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	63.53%
Matrix_23	ANAC46	Not Available	63.19%
Matrix_334	AT3G23230	Not Available	63.19%
Matrix_59	AT4G00238; AT4G00250	Not Available	62.86%
Matrix_171	LBD3; LBD4	Not Available	62.76%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	62.65%
Matrix_374	AT5G07580; AT5G61590	Not Available	62.58%
Matrix_260	CAMTA3	Not Available	62.31%
Matrix_492	ETT	Not Available	62.26%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	62.22%
Matrix_5	AT5G51190; ERF104	Not Available	61.94%
Matrix_456	bZIP60	Not Available	61.68%
Matrix_190	ATERF1	Not Available	61.18%
Matrix_282	bZIP60	Not Available	60.89%
Matrix_40	TCP2	Not Available	60.54%
Matrix_196	TCP20; AT5G41030	Not Available	60.50%
Matrix_253	ETT	Not Available	60.30%
Matrix_287	ERF2	Not Available	60.29%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	59.70%
Matrix_344	ATERF15; AT4G18450	Not Available	59.51%
Matrix_482	AT2G25650; AT4G00270	Not Available	59.37%
Matrix_228	TGA2	Not Available	58.79%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	58.76%
Matrix_144	AT5G08330; AT5G23280	Not Available	58.59%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	58.47%
Matrix_475	AT5G64220	Not Available	58.22%
Matrix_500	WRKY43	Not Available	58.09%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.07%
Matrix_101	ERF5	Not Available	57.56%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	57.46%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	57.21%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	56.85%
Matrix_259	AT1G50680; AT1G51120	Not Available	56.83%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	56.51%
Matrix_265	NGA3	Not Available	56.44%
Matrix_193	RAV1	Not Available	56.44%
Matrix_446	LBD16	Not Available	56.40%
Matrix_322	NST3; ANAC015; BRN2	Not Available	56.36%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	56.34%
Matrix_293	WRKY38	Not Available	56.27%
Matrix_249	WRKY11	Not Available	55.95%
Matrix_478	AT1G01250	Not Available	55.88%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	55.80%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	55.77%
Matrix_70	GATA26	Not Available	55.75%
Matrix_502	AT3G13040	Not Available	55.69%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	55.57%
Matrix_393	REM1	Not Available	55.57%
Matrix_130	TCP16	Not Available	55.54%
Matrix_348	AT5G51910	Not Available	55.53%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	55.50%
Matrix_20	ANAC030; NST1; NAC066	Not Available	55.47%
Matrix_292	FTQ4	Not Available	55.29%
Matrix_243	RAP2.12; RAP2.2	Not Available	55.21%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	55.07%
Matrix_389	ILR3	Not Available	54.95%
Matrix_504	WRKY40	Not Available	54.93%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	54.92%
Matrix_197	NAP	Not Available	54.88%
Matrix_329	WRKY12	Not Available	54.83%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	54.67%
Matrix_273	ANAC55	Not Available	54.64%
Matrix_116	ANAC55	Not Available	54.59%
Matrix_271	AT3G16350	Not Available	54.58%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.51%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	54.39%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.38%
Matrix_447	RVE1	Not Available	54.36%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	54.29%
Matrix_230	ARR11	Not Available	54.21%
Matrix_415	WRKY27	Not Available	54.01%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	54.01%
Motif_265	GCAACREPEATZMZEIN	GCAAC repeat found in the 22bp recognition site for beta-1 factor in the promoter of beta-zein (prolamin type) gene of maize; GCAAC is the core recognition sequence of the protein encoded by the retroviral oncogene myb	53.99%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	53.98%
Matrix_505	GATA8	Not Available	53.93%
Matrix_139	OBF5	Not Available	53.92%
Matrix_37	GATA27	Not Available	53.85%
Matrix_42	AT2G45680	Not Available	53.80%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	53.70%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	53.70%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	53.68%
Matrix_450	SPL7	Not Available	53.58%
Matrix_463	HAT3.1	Not Available	53.52%
Matrix_297	TCP15	Not Available	53.46%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	53.40%
Matrix_350	ARR14	Not Available	53.35%
Matrix_308	INO	Not Available	53.32%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	53.23%
Matrix_141	AT3G25990	Not Available	53.22%
Matrix_376	WRKY45	Not Available	53.19%
Matrix_296	GBF2	Not Available	53.15%
Matrix_507	TCP3	Not Available	53.14%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	53.06%
Matrix_328	AT1G76580	Not Available	52.96%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.96%
Matrix_290	AP2	Not Available	52.92%
Matrix_84	AtGRF6	Not Available	52.92%
Matrix_430	TOE2	Not Available	52.91%
Motif_203	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	52.77%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	52.76%
Matrix_232	TCP23	Not Available	52.74%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.71%
Matrix_186	FHY3	Not Available	52.70%
Matrix_392	ARR2	Not Available	52.64%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.63%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.62%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	52.57%
Matrix_281	TCP13	Not Available	52.55%
Matrix_97	APRR2	Not Available	52.51%
Matrix_405	DREB2C	Not Available	52.39%
Matrix_52	ZAT18	Not Available	52.33%
Matrix_300	bZIP68; bZIP16	Not Available	52.27%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	52.25%
Matrix_120	BEE2	Not Available	52.20%
Matrix_286	GATA7	Not Available	52.07%
Matrix_80	BIM1	Not Available	51.93%
Matrix_26	ATMYB3; MYB24	Not Available	51.91%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.91%
Matrix_170	AT5G47660	Not Available	51.90%
Matrix_106	AT5G47390	Not Available	51.89%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	51.82%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.74%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	51.69%
Matrix_53	MYC3	Not Available	51.54%
Matrix_323	BIM3	Not Available	51.52%
Matrix_152	EIL1; AT5G65100	Not Available	51.49%
Matrix_518	AT2G21230	Not Available	51.47%
Matrix_362	DEAR3	Not Available	51.47%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	51.44%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	51.43%
Matrix_479	TOE1	Not Available	51.38%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	51.34%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.26%
Motif_621	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	51.24%
Matrix_416	ASL5	Not Available	51.20%
Matrix_330	MYC2; TT8	Not Available	51.18%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	51.17%
Matrix_110	ATABI4; AT3G57600	Not Available	51.16%
Matrix_226	GATA1	Not Available	50.97%
Matrix_465	MYC4	Not Available	50.76%
Matrix_452	MYB46	Not Available	50.74%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	50.67%
Matrix_122	ABF1; AREB2	Not Available	50.67%
Matrix_195	GATA2; GATA4	Not Available	50.63%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	50.56%
Matrix_6	AT1G70000	Not Available	50.45%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.41%
Matrix_449	BIM2	Not Available	50.40%
Matrix_311	TGA1	Not Available	50.39%
Matrix_69	AT2G03500	Not Available	50.37%
Matrix_162	AtPHR1	Not Available	50.21%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	50.21%
Matrix_67	GLK1	Not Available	50.21%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.04%
Matrix_46	AT4G21895	Not Available	50.02%