PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_33
Name: SPL11; SPL10; SPL2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_180	SPL1	Not Available	73.77%
Matrix_31	SPL1	Not Available	73.61%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	70.06%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	68.12%
Matrix_450	SPL7	Not Available	67.89%
Matrix_85	SPL5	Not Available	67.32%
Matrix_328	AT1G76580	Not Available	66.26%
Matrix_418	KNAT6; KNAT2	Not Available	65.86%
Matrix_80	BIM1	Not Available	65.16%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	65.10%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	64.56%
Matrix_285	DDF1	Not Available	64.53%
Matrix_307	RGL2; RGL3	Not Available	64.49%
Matrix_399	TGA1	Not Available	64.12%
Matrix_404	OBP4	Not Available	64.06%
Matrix_3	WRKY48	Not Available	63.69%
Matrix_451	STY1	Not Available	62.97%
Matrix_176	MYB98	Not Available	62.94%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	62.75%
Matrix_38	SPL14	Not Available	62.44%
Matrix_311	TGA1	Not Available	62.32%
Matrix_75	WRKY29	Not Available	61.75%
Matrix_109	GBF3	Not Available	61.73%
Matrix_416	ASL5	Not Available	61.62%
Matrix_413	RAV1	Not Available	61.38%
Matrix_298	RAV1	Not Available	61.38%
Matrix_221	SPL7	Not Available	61.30%
Matrix_209	RAP2.6	Not Available	61.29%
Matrix_188	SPL4	Not Available	61.28%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	60.99%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	60.75%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	60.72%
Matrix_113	ABI5	Not Available	60.69%
Matrix_227	AT1G64620	Not Available	60.66%
Matrix_469	NAC041; NAC083	Not Available	60.56%
Matrix_380	ATMYR1	Not Available	60.50%
Matrix_331	GBF1	Not Available	60.45%
Matrix_122	ABF1; AREB2	Not Available	60.36%
Matrix_254	MYB52	Not Available	60.17%
Matrix_128	TGA2	Not Available	60.12%
Matrix_169	E2F1	Not Available	60.09%
Matrix_137	SPL1; SPL12	Not Available	59.82%
Matrix_370	WRKY50; WRKY51	Not Available	59.78%
Matrix_102	WRKY21	Not Available	59.61%
Matrix_87	AT1G19000	Not Available	59.59%
Matrix_166	TGA4	Not Available	59.52%
Matrix_17	WRKY22	Not Available	59.47%
Matrix_384	ATWRKY17	Not Available	59.42%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	59.33%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	59.18%
Matrix_367	REM1	Not Available	59.05%
Matrix_489	RAV1	Not Available	59.04%
Matrix_352	LEC2	Not Available	59.03%
Matrix_410	TOE2	Not Available	58.97%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.86%
Matrix_101	ERF5	Not Available	58.78%
Matrix_333	GATA3	Not Available	58.77%
Matrix_463	HAT3.1	Not Available	58.70%
Matrix_494	OBP4	Not Available	58.69%
Matrix_499	ARR18	Not Available	58.69%
Matrix_438	AtbZIP63	Not Available	58.67%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	58.66%
Matrix_271	AT3G16350	Not Available	58.60%
Matrix_287	ERF2	Not Available	58.58%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	58.50%
Matrix_41	anac058	Not Available	58.50%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	58.49%
Matrix_264	ATAREB1	Not Available	58.42%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	58.40%
Matrix_480	BES1	Not Available	58.39%
Matrix_472	ZN_C2_H2	Not Available	58.38%
Matrix_343	AT2G33710	Not Available	58.37%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	58.32%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	58.27%
Matrix_162	AtPHR1	Not Available	58.26%
Matrix_226	GATA1	Not Available	58.21%
Matrix_206	CUC1; ANAC100	Not Available	58.11%
Matrix_397	GT2L	Not Available	58.00%
Matrix_402	TOE1	Not Available	57.95%
Matrix_432	AT1G77920	Not Available	57.93%
Matrix_220	WRKY18	Not Available	57.89%
Matrix_308	INO	Not Available	57.83%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	57.73%
Matrix_332	SPT; ALC	Not Available	57.61%
Matrix_234	RAP2.3	Not Available	57.61%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	57.54%
Matrix_323	BIM3	Not Available	57.52%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	57.47%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	57.36%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	57.21%
Matrix_299	PFG3	Not Available	57.20%
Matrix_120	BEE2	Not Available	57.16%
Matrix_491	AT1G68670; AT3G25790	Not Available	56.96%
Matrix_340	HSFC1	Not Available	56.94%
Matrix_387	ORA47	Not Available	56.93%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.79%
Matrix_195	GATA2; GATA4	Not Available	56.74%
Matrix_53	MYC3	Not Available	56.74%
Matrix_449	BIM2	Not Available	56.67%
Matrix_453	EIL3	Not Available	56.66%
Matrix_174	ZAT2	Not Available	56.63%
Matrix_424	MYB59	Not Available	56.51%
Matrix_153	AP2	Not Available	56.50%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	56.49%
Matrix_69	AT2G03500	Not Available	56.49%
Matrix_406	ATERF-7	Not Available	56.43%
Matrix_192	FHY3/FAR1	Not Available	56.43%
Matrix_492	ETT	Not Available	56.39%
Matrix_156	POC1	Not Available	56.35%
Matrix_59	AT4G00238; AT4G00250	Not Available	56.33%
Matrix_16	AT3G04450; PHL1	Not Available	56.31%
Matrix_197	NAP	Not Available	56.29%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.21%
Matrix_286	GATA7	Not Available	56.10%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	56.09%
Matrix_415	WRKY27	Not Available	56.09%
Matrix_330	MYC2; TT8	Not Available	56.09%
Matrix_465	MYC4	Not Available	56.08%
Matrix_335	HSFB2A	Not Available	56.07%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	56.04%
Matrix_12	EIN3; EIL2	Not Available	56.04%
Matrix_61	ATCBF3	Not Available	56.01%
Matrix_374	AT5G07580; AT5G61590	Not Available	56.00%
Matrix_504	WRKY40	Not Available	55.96%
Matrix_389	ILR3	Not Available	55.91%
Matrix_457	TGA2	Not Available	55.88%
Matrix_127	AtMYB15	More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	55.78%
Matrix_496	ATMYB15	Not Available	55.78%
Matrix_237	MYB55	Not Available	55.51%
Matrix_70	GATA26	Not Available	55.49%
Matrix_520	ARR14	Not Available	55.43%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	55.39%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	55.37%
Matrix_446	LBD16	Not Available	55.36%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	55.34%
Matrix_369	AT2G18300	Not Available	55.30%
Motif_326	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.29%
Matrix_361	AT1G25550	Not Available	55.28%
Matrix_296	GBF2	Not Available	55.21%
Matrix_190	ATERF1	Not Available	55.19%
Matrix_447	RVE1	Not Available	55.18%
Matrix_423	AT3G04030	Not Available	55.17%
Matrix_40	TCP2	Not Available	55.14%
Matrix_408	GATA12	Not Available	55.13%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	55.07%
Matrix_321	HRD	Not Available	54.98%
Matrix_107	AtSPL3	Not Available	54.95%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	54.91%
Matrix_6	AT1G70000	Not Available	54.89%
Matrix_106	AT5G47390	Not Available	54.84%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	54.79%
Matrix_151	ASIL1	Not Available	54.73%
Matrix_324	AT2G01060	Not Available	54.70%
Matrix_315	MYB111	Not Available	54.68%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	54.64%
Matrix_146	ORA47	Not Available	54.60%
Matrix_171	LBD3; LBD4	Not Available	54.59%
Matrix_72	CDF2	Not Available	54.55%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	54.52%
Matrix_300	bZIP68; bZIP16	Not Available	54.43%
Matrix_129	ABF1	Not Available	54.37%
Matrix_139	OBF5	Not Available	54.36%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	54.35%
Matrix_99	DOF4.7	Not Available	54.32%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	54.31%
Matrix_93	YAB5	Not Available	54.25%
Matrix_201	AT1G74840	Not Available	54.22%
Matrix_309	FLC	Not Available	54.22%
Matrix_301	PIL5	Not Available	54.22%
Matrix_14	ZCW32; AT5G62610	Not Available	54.21%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	54.16%
Matrix_462	ATERF-8	Not Available	54.13%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	54.09%
Matrix_259	AT1G50680; AT1G51120	Not Available	54.06%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	54.03%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	53.99%
Matrix_47	AtMYB77	Not Available	53.99%
Matrix_420	ANAC58	Not Available	53.99%
Matrix_260	CAMTA3	Not Available	53.96%
Matrix_337	MYB46	Not Available	53.95%
Matrix_265	NGA3	Not Available	53.92%
Matrix_193	RAV1	Not Available	53.92%
Matrix_502	AT3G13040	Not Available	53.91%
Matrix_470	WRKY18	Not Available	53.70%
Matrix_378	ATERF1	Not Available	53.67%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	53.59%
Matrix_336	AT5G08520	Not Available	53.58%
Matrix_493	AT1G22985; AT1G71130	Not Available	53.56%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.40%
Matrix_341	HMGA	Not Available	53.35%
Matrix_236	CCA1	Not Available	53.33%
Matrix_475	AT5G64220	Not Available	53.25%
Matrix_203	GATA9; GATA12	Not Available	53.19%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.05%
Matrix_327	ARR11	Not Available	53.01%
Matrix_272	DEAR4	Not Available	52.99%
Matrix_104	PI	Not Available	52.94%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	52.92%
Matrix_8	KAN1	Not Available	52.84%
Matrix_4	ARR14	Not Available	52.83%
Matrix_210	ARR1	Not Available	52.83%
Matrix_444	AT1G19485; AT4G17950	Not Available	52.81%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	52.77%
Matrix_52	ZAT18	Not Available	52.69%
Matrix_473	RRTF1	Not Available	52.69%
Matrix_448	ATERF6	Not Available	52.55%
Matrix_116	ANAC55	Not Available	52.53%
Matrix_181	Dof5.7	Not Available	52.42%
Matrix_230	ARR11	Not Available	52.41%
Matrix_91	CRF3	Not Available	52.40%
Matrix_55	PIF3	Not Available	52.39%
Matrix_373	E2FE	Not Available	52.35%
Matrix_495	HD-GL2-1; ANL2	Not Available	52.34%
Matrix_92	AT1G33760	Not Available	52.32%
Matrix_142	ZFP8	Not Available	52.32%
Matrix_37	GATA27	Not Available	52.30%
Matrix_177	ADOF2	Not Available	52.29%
Matrix_165	KNAT1	Not Available	52.17%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	52.17%
Matrix_273	ANAC55	Not Available	52.12%
Motif_403	WINPSTPIIIK	Binding site of wound-inducible nuclear protein from wounded tomato leaves; Found in the promoter region of a protease inhibitor IIK gene from potato	51.92%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	51.89%
Matrix_439	AP3	Not Available	51.88%
Motif_244	ABRE-like binding site motif	Not Available	51.88%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.88%
Matrix_78	AT3G45610	Not Available	51.88%
Matrix_213	ATHB22	Not Available	51.79%
Matrix_261	ATERF-1	Not Available	51.76%
Matrix_392	ARR2	Not Available	51.75%
Matrix_433	ATERF1	Not Available	51.67%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.67%
Matrix_313	ATMYB65; MYB33	Not Available	51.64%
Matrix_431	ATHB21; HB-3	Not Available	51.63%
Matrix_71	ATHB7	Not Available	51.60%
Matrix_83	PRR5	Not Available	51.59%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	51.57%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	51.46%
Matrix_427	ZAT14	Not Available	51.45%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.39%
Matrix_212	ATHB-12	Not Available	51.33%
Matrix_507	TCP3	Not Available	51.29%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	51.23%
Matrix_152	EIL1; AT5G65100	Not Available	51.21%
Matrix_204	WOX13	Not Available	51.16%
Matrix_97	APRR2	Not Available	51.09%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	51.06%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	51.04%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	51.03%
Matrix_385	DEAR4	Not Available	51.03%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	51.01%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	51.00%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	50.98%
Matrix_157	LHY; RVE2	Not Available	50.97%
Matrix_144	AT5G08330; AT5G23280	Not Available	50.92%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	50.86%
Matrix_252	RAP2.6	Not Available	50.86%
Matrix_110	ATABI4; AT3G57600	Not Available	50.85%
Matrix_411	DOF5.6	Not Available	50.84%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.80%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.72%
Matrix_510	AtMYB84	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	50.67%
Matrix_179	AtMYB84; MYB36; MYB68; O49746_ARATH	Not Available	50.67%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.62%
Matrix_302	HAT1; HAT2	Not Available	50.58%
Matrix_211	MYB3	Not Available	50.56%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	50.55%
Matrix_141	AT3G25990	Not Available	50.55%
Matrix_350	ARR14	Not Available	50.52%
Matrix_1	TOE2	Not Available	50.51%
Matrix_23	ANAC46	Not Available	50.51%
Matrix_134	ABF1	Not Available	50.50%
Matrix_9	AT5G04760	Not Available	50.44%
Matrix_394	DREB_U	Not Available	50.41%
Matrix_148	WRKY60	Not Available	50.38%
Matrix_505	GATA8	Not Available	50.36%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	50.36%
Matrix_501	DAG2	Not Available	50.22%
Matrix_478	AT1G01250	Not Available	50.22%
Matrix_456	bZIP60	Not Available	50.22%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	50.17%
Matrix_497	AP3	Not Available	50.15%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	50.07%