PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_323
Name: BIM3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_449	BIM2	Not Available	95.12%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	94.88%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	93.68%
Matrix_120	BEE2	Not Available	92.66%
Matrix_330	MYC2; TT8	Not Available	92.59%
Matrix_465	MYC4	Not Available	92.13%
Matrix_389	ILR3	Not Available	90.26%
Matrix_129	ABF1	Not Available	84.89%
Matrix_332	SPT; ALC	Not Available	80.74%
Matrix_122	ABF1; AREB2	Not Available	79.29%
Matrix_14	ZCW32; AT5G62610	Not Available	78.61%
Matrix_247	PIF3	Not Available	78.43%
Matrix_339	bHLH104	Not Available	78.42%
Matrix_456	bZIP60	Not Available	75.83%
Matrix_480	BES1	Not Available	75.15%
Matrix_116	ANAC55	Not Available	74.45%
Matrix_273	ANAC55	Not Available	74.30%
Matrix_420	ANAC58	Not Available	73.95%
Matrix_104	PI	Not Available	73.49%
Matrix_369	AT2G18300	Not Available	73.05%
Matrix_233	MYC3	Not Available	72.74%
Matrix_55	PIF3	Not Available	72.47%
Matrix_437	MYC2	Not Available	72.14%
Matrix_320	MYC4	Not Available	71.81%
Matrix_300	bZIP68; bZIP16	Not Available	71.67%
Matrix_296	GBF2	Not Available	71.46%
Matrix_113	ABI5	Not Available	71.07%
Matrix_60	AT1G01260; AT5G57150	Not Available	71.03%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	71.00%
Matrix_150	UNE10; PIF7	Not Available	70.88%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	70.86%
Matrix_188	SPL4	Not Available	70.58%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	70.28%
Matrix_331	GBF1	Not Available	69.59%
Matrix_472	ZN_C2_H2	Not Available	69.49%
Matrix_156	POC1	Not Available	69.26%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	68.98%
Matrix_307	RGL2; RGL3	Not Available	68.97%
Matrix_174	ZAT2	Not Available	68.96%
Matrix_80	BIM1	Not Available	68.87%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	68.76%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	68.63%
Matrix_322	NST3; ANAC015; BRN2	Not Available	68.62%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	68.55%
Matrix_476	bHLH115; bHLH34	Not Available	68.51%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	68.51%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	68.47%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	68.46%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	68.25%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	68.21%
Matrix_23	ANAC46	Not Available	68.17%
Matrix_109	GBF3	Not Available	68.07%
Motif_400	ABREAZMRAB28	ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	68.01%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	67.97%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	67.90%
Matrix_7	PIF4	Not Available	67.89%
Matrix_511	AT1G05805; AT1G35460; AT1G51140; AT2G42280; AT2G43140; AT4G09180	Not Available	67.83%
Matrix_171	LBD3; LBD4	Not Available	67.67%
Matrix_145	GBF4; AT5G44080	Not Available	67.64%
Matrix_438	AtbZIP63	Not Available	67.62%
Matrix_59	AT4G00238; AT4G00250	Not Available	67.55%
Matrix_259	AT1G50680; AT1G51120	Not Available	67.45%
Matrix_440	LFY	Not Available	67.44%
Matrix_134	ABF1	Not Available	67.09%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	66.85%
Matrix_141	AT3G25990	Not Available	66.81%
Matrix_151	ASIL1	Not Available	66.67%
Matrix_20	ANAC030; NST1; NAC066	Not Available	66.42%
Matrix_260	CAMTA3	Not Available	66.38%
Matrix_282	bZIP60	Not Available	66.10%
Matrix_1	TOE2	Not Available	65.92%
Motif_244	ABRE-like binding site motif	Not Available	65.66%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	65.60%
Matrix_422	TOE1	Not Available	65.58%
Matrix_221	SPL7	Not Available	65.54%
Matrix_228	TGA2	Not Available	65.12%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	64.96%
Matrix_373	E2FE	Not Available	64.91%
Matrix_64	PIF5	Not Available	64.87%
Matrix_111	ABF3	Not Available	64.61%
Matrix_153	AP2	Not Available	64.43%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	64.05%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	63.94%
Matrix_265	NGA3	Not Available	63.66%
Matrix_193	RAV1	Not Available	63.66%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	63.64%
Matrix_374	AT5G07580; AT5G61590	Not Available	63.59%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	63.43%
Matrix_416	ASL5	Not Available	62.68%
Matrix_137	SPL1; SPL12	Not Available	62.67%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	62.32%
Matrix_264	ATAREB1	Not Available	62.20%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	62.17%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	62.08%
Matrix_181	Dof5.7	Not Available	62.01%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	61.97%
Matrix_187	CDC5	Not Available	61.90%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	61.90%
Matrix_349	CDC5	Not Available	61.90%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	61.89%
Matrix_143	GATA14; GATA6; GATA5	Not Available	61.67%
Matrix_70	GATA26	Not Available	61.62%
Matrix_333	GATA3	Not Available	61.62%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	61.53%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	61.51%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	61.49%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	61.39%
Matrix_128	TGA2	Not Available	61.34%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	61.26%
Matrix_344	ATERF15; AT4G18450	Not Available	61.18%
Matrix_475	AT5G64220	Not Available	61.17%
Matrix_101	ERF5	Not Available	61.13%
Motif_665	ACEATCHS	ACEAtCHS (ACGT containing element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-1/blue light responsiveness; Transcriptional repression by AtMYB4 controls production of UV-protecting sun screens in Arabidopsis; AtMYB4 mutant shows enhanced levels of sinapate ester in leaves and tolerance of UV-B irradiation; AtMYB4 expression is downregulated by exposure to UV-B light; Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	61.09%
Matrix_178	HSFB2A	Not Available	61.06%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	61.05%
Matrix_186	FHY3	Not Available	61.03%
Matrix_53	MYC3	Not Available	60.98%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	60.98%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	60.89%
Motif_120	ABRETAEM	ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC	60.86%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	60.83%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	60.81%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	60.77%
Matrix_355	ERF10; ERF11	Not Available	60.64%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	60.59%
Matrix_19	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	60.44%
Matrix_311	TGA1	Not Available	60.38%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	60.35%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	60.33%
Matrix_204	WOX13	Not Available	60.29%
Matrix_8	KAN1	Not Available	60.26%
Matrix_432	AT1G77920	Not Available	60.19%
Matrix_418	KNAT6; KNAT2	Not Available	59.81%
Motif_644	ABREDISTBBNNAPA	dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	59.73%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	59.59%
Matrix_139	OBF5	Not Available	59.50%
Motif_124	ABREMOTIFIIIOSRAB16B	Motif III found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	59.46%
Matrix_65	POC1; PIL1	Not Available	59.43%
Motif_421	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	59.43%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	59.40%
Matrix_321	HRD	Not Available	59.35%
Matrix_27	ATAIB; ATNIG1	Not Available	59.35%
Motif_638	ABRE binding site motif	Not Available	59.33%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	59.22%
Matrix_41	anac058	Not Available	59.17%
Matrix_50	ATERF14; AT5G43410	Not Available	59.14%
Matrix_328	AT1G76580	Not Available	59.10%
Matrix_421	GLK1	Not Available	59.01%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	58.98%
Matrix_5	AT5G51190; ERF104	Not Available	58.92%
Matrix_135	ABI3	Not Available	58.92%
Matrix_409	DEAR3	Not Available	58.90%
Matrix_210	ARR1	Not Available	58.88%
Matrix_77	PRR5	Not Available	58.84%
Matrix_4	ARR14	Not Available	58.82%
Matrix_166	TGA4	Not Available	58.71%
Matrix_491	AT1G68670; AT3G25790	Not Available	58.68%
Matrix_255	cdf3	Not Available	58.68%
Matrix_287	ERF2	Not Available	58.65%
Matrix_493	AT1G22985; AT1G71130	Not Available	58.64%
Matrix_211	MYB3	Not Available	58.60%
Matrix_352	LEC2	Not Available	58.52%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	58.51%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	58.51%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	58.43%
Matrix_97	APRR2	Not Available	58.34%
Matrix_477	RAV1	Not Available	58.29%
Matrix_467	RAV1	Not Available	58.29%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	58.29%
Matrix_243	RAP2.12; RAP2.2	Not Available	58.27%
Matrix_406	ATERF-7	Not Available	58.22%
Matrix_57	WIN1; SHN3; SHN2	Not Available	58.14%
Matrix_227	AT1G64620	Not Available	58.06%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	58.04%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	58.01%
Matrix_79	FUS3	Not Available	57.95%
Motif_448	IRO2OS	OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency	57.91%
Matrix_37	GATA27	Not Available	57.91%
Matrix_69	AT2G03500	Not Available	57.88%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	57.84%
Matrix_206	CUC1; ANAC100	Not Available	57.73%
Matrix_162	AtPHR1	Not Available	57.68%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	57.59%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	57.28%
Matrix_308	INO	Not Available	57.17%
Matrix_484	ATERF13	Not Available	57.10%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	57.08%
Matrix_45	DRN	Not Available	57.08%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	56.98%
Matrix_362	DEAR3	Not Available	56.97%
Matrix_452	MYB46	Not Available	56.95%
Matrix_91	CRF3	Not Available	56.92%
Matrix_21	HSFC1	Not Available	56.83%
Matrix_436	AT3G49930; AZF1	Not Available	56.74%
Motif_483	ABREMOTIFAOSOSEM	motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	56.70%
Matrix_379	RHL41	Not Available	56.61%
Matrix_450	SPL7	Not Available	56.55%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	56.47%
Matrix_415	WRKY27	Not Available	56.42%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	56.33%
Matrix_87	AT1G19000	Not Available	56.29%
Matrix_423	AT3G04030	Not Available	56.23%
Matrix_393	REM1	Not Available	56.22%
Matrix_463	HAT3.1	Not Available	56.21%
Matrix_198	STZ; C2H2; AZF3	Not Available	56.21%
Matrix_16	AT3G04450; PHL1	Not Available	56.20%
Matrix_469	NAC041; NAC083	Not Available	56.11%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.07%
Matrix_261	ATERF-1	Not Available	55.94%
Matrix_503	AT2G37430; AT3G53600	Not Available	55.94%
Matrix_17	WRKY22	Not Available	55.89%
Matrix_462	ATERF-8	Not Available	55.87%
Matrix_446	LBD16	Not Available	55.86%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	55.84%
Matrix_343	AT2G33710	Not Available	55.74%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	55.74%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	55.62%
Matrix_126	RBE	Not Available	55.56%
Matrix_218	TIFY2B; TIFY1	Not Available	55.45%
Matrix_425	TIFY2A	Not Available	55.34%
Matrix_142	ZFP8	Not Available	55.34%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	55.32%
Matrix_274	EDF3	Not Available	55.22%
Matrix_236	CCA1	Not Available	55.22%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	55.16%
Matrix_31	SPL1	Not Available	55.11%
Motif_627	ACGTABREMOTIFA2OSEM	Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis	55.11%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	55.10%
Matrix_277	RAP2.6	Not Available	55.08%
Matrix_239	AT5G04390	Not Available	55.03%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.89%
Matrix_85	SPL5	Not Available	54.88%
Matrix_147	ERF3; AT1G80580	Not Available	54.85%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	54.85%
Matrix_460	NAM; anac025; ATNAC2	Not Available	54.79%
Matrix_177	ADOF2	Not Available	54.78%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	54.76%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.76%
Matrix_361	AT1G25550	Not Available	54.73%
Motif_374	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.68%
Matrix_61	ATCBF3	Not Available	54.63%
Matrix_12	EIN3; EIL2	Not Available	54.58%
Matrix_399	TGA1	Not Available	54.58%
Matrix_46	AT4G21895	Not Available	54.54%
Matrix_92	AT1G33760	Not Available	54.51%
Motif_179	CACGTGMOTIF; BES1; PIF4; PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	54.43%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	54.42%
Matrix_334	AT3G23230	Not Available	54.41%
Motif_349	QARBNEXTA	QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene	54.41%
Matrix_209	RAP2.6	Not Available	54.40%
Matrix_234	RAP2.3	Not Available	54.35%
Matrix_404	OBP4	Not Available	54.34%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	54.33%
Matrix_336	AT5G08520	Not Available	54.33%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.31%
Matrix_490	AtMYB77; ATMYB44	Not Available	54.30%
Motif_680	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.18%
Matrix_346	AtMYB70; MYB73	Not Available	54.18%
Matrix_84	AtGRF6	Not Available	54.15%
Matrix_286	GATA7	Not Available	54.14%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	54.13%
Matrix_225	MYB52	Not Available	54.09%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	54.09%
Motif_339	ABRE-like binding site motif	Molecular responses to dehydration and low temperature	54.08%
Matrix_360	ORA59	Not Available	54.07%
Matrix_324	AT2G01060	Not Available	54.00%
Matrix_433	ATERF1	Not Available	53.93%
Matrix_516	ANAC038; ANAC079	Not Available	53.92%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	53.90%
Matrix_443	AGL15	Not Available	53.86%
Matrix_173	ZAP1	Not Available	53.85%
Matrix_226	GATA1	Not Available	53.65%
Matrix_500	WRKY43	Not Available	53.63%
Matrix_146	ORA47	Not Available	53.63%
Matrix_78	AT3G45610	Not Available	53.60%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	53.60%
Matrix_429	KAN4	Not Available	53.56%
Matrix_75	WRKY29	Not Available	53.56%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	53.51%
Matrix_295	ERF1	Not Available	53.47%
Matrix_114	EPR1; AT3G10113	Not Available	53.44%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	53.30%
Matrix_249	WRKY11	Not Available	53.22%
Matrix_424	MYB59	Not Available	53.20%
Matrix_272	DEAR4	Not Available	53.20%
Matrix_212	ATHB-12	Not Available	53.20%
Matrix_115	AGL15	Not Available	53.15%
Matrix_448	ATERF6	Not Available	53.15%
Matrix_380	ATMYR1	Not Available	53.13%
Matrix_99	DOF4.7	Not Available	53.03%
Motif_558	BOXIIPCCHS	Core of Box II/G box found in the parsley chs genes; Essential for light regulation	53.02%
Motif_639	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	53.01%
Matrix_489	RAV1	Not Available	53.00%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	52.98%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.97%
Matrix_93	YAB5	Not Available	52.94%
Matrix_411	DOF5.6	Not Available	52.93%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	52.86%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	52.75%
Matrix_431	ATHB21; HB-3	Not Available	52.73%
Matrix_9	AT5G04760	Not Available	52.67%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	52.67%
Matrix_197	NAP	Not Available	52.67%
Matrix_518	AT2G21230	Not Available	52.66%
Matrix_398	TBP2; ATTRB2	Not Available	52.64%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	52.62%
Motif_238	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	52.62%
Matrix_165	KNAT1	Not Available	52.60%
Motif_24	CAMTA3	Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance	52.57%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	52.56%
Motif_384	SITEIOSPCNA	Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation	52.53%
Matrix_313	ATMYB65; MYB33	Not Available	52.52%
Motif_141	BP5OSWX	OsBP-5 (a MYC protein) binding site in Wx promoter	52.44%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	52.43%
Matrix_354	AHL12	Not Available	52.43%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.31%
Matrix_505	GATA8	Not Available	52.16%
Matrix_378	ATERF1	Not Available	52.02%
Matrix_152	EIL1; AT5G65100	Not Available	51.99%
Matrix_492	ETT	Not Available	51.99%
Matrix_190	ATERF1	Not Available	51.96%
Matrix_512	HAT3	Not Available	51.92%
Matrix_157	LHY; RVE2	Not Available	51.91%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	51.88%
Matrix_397	GT2L	Not Available	51.84%
Motif_234	ABADESI2	Synthetic element (hex-3) related to response to ABA and to desiccation; seed expression; Gene: synthetic; hex-3, mutant of hex-1 sequence from wheat histone H3 promoter; transacting factor: bZIP	51.77%
Matrix_167	ZAT6	Not Available	51.71%
Motif_133	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	51.55%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	51.53%
Matrix_363	RAP2.3	Not Available	51.52%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	51.51%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	51.50%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	51.48%
Matrix_396	AP3	Not Available	51.43%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	51.42%
Matrix_241	HB-1; AT5G44180	Not Available	51.42%
Matrix_196	TCP20; AT5G41030	Not Available	51.42%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	51.41%
Matrix_224	ERF1	Not Available	51.36%
Matrix_402	TOE1	Not Available	51.27%
Matrix_253	ETT	Not Available	51.23%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.20%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	51.20%
Matrix_11	TRFL5	Not Available	51.13%
Matrix_169	E2F1	Not Available	51.09%
Matrix_278	AtbZIP44	Not Available	51.06%
Matrix_3	WRKY48	Not Available	51.04%
Matrix_410	TOE2	Not Available	50.89%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.87%
Matrix_72	CDF2	Not Available	50.86%
Matrix_478	AT1G01250	Not Available	50.80%
Matrix_403	BZR1	Not Available	50.75%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	50.74%
Motif_330	ANAERO5CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator	50.64%
Motif_139	RHERPATEXPA7	Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns	50.61%
Matrix_341	HMGA	Not Available	50.51%
Matrix_347	WOX14; WOX10	Not Available	50.47%
Matrix_502	AT3G13040	Not Available	50.46%
Matrix_176	MYB98	Not Available	50.38%
Matrix_315	MYB111	Not Available	50.37%
Matrix_501	DAG2	Not Available	50.34%
Matrix_337	MYB46	Not Available	50.33%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	50.29%
Motif_567	T/GBOXATPIN2	T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif	50.18%
Matrix_430	TOE2	Not Available	50.05%