PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_309
Name: FLC
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_72	CDF2	Not Available	62.95%
Matrix_227	AT1G64620	Not Available	61.10%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	60.55%
Matrix_404	OBP4	Not Available	60.34%
Matrix_501	DAG2	Not Available	59.09%
Motif_178	MRNA3ENDTAH3	Cis element in 3' end region of wheat histone H3 mRNA; 3' end formation; Also found in histone genes of other plants, yeast	58.70%
Matrix_201	AT1G74840	Not Available	58.61%
Matrix_255	cdf3	Not Available	57.90%
Matrix_33	SPL11; SPL10; SPL2	Not Available	57.74%
Matrix_412	GL1	Not Available	57.60%
Matrix_380	ATMYR1	Not Available	57.42%
Matrix_407	AP1	Not Available	57.04%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	56.33%
Matrix_25	AP3	Not Available	56.12%
Matrix_208	AP1	Not Available	56.02%
Matrix_87	AT1G19000	Not Available	55.46%
Matrix_413	RAV1	Not Available	55.43%
Matrix_298	RAV1	Not Available	55.43%
Motif_90	GT1MOTIFPSRBCS	GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE	55.43%
Matrix_496	ATMYB15	Not Available	54.98%
Matrix_127	AtMYB15	More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	54.98%
Matrix_132	SOC1	Not Available	54.44%
Matrix_213	ATHB22	Not Available	54.06%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	53.98%
Matrix_301	PIL5	Not Available	53.92%
Matrix_179	AtMYB84; MYB36; MYB68; O49746_ARATH	Not Available	53.83%
Matrix_510	AtMYB84	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	53.83%
Matrix_423	AT3G04030	Not Available	53.81%
Matrix_181	Dof5.7	Not Available	53.78%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	53.76%
Matrix_290	AP2	Not Available	53.70%
Matrix_74	LFY	Not Available	53.67%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	53.47%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	53.05%
Matrix_418	KNAT6; KNAT2	Not Available	53.04%
Motif_76	SURE1STPAT21	Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	52.94%
Matrix_434	ARR11	Not Available	52.80%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.70%
Matrix_162	AtPHR1	Not Available	52.55%
Matrix_20	ANAC030; NST1; NAC066	Not Available	52.52%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.46%
Matrix_361	AT1G25550	Not Available	52.42%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	52.39%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.35%
Motif_59	CEREGLUBOX3PSLEGA	cereal glutenin box in pea (P.s.) legumin gene (legA); sequence homologous to the cereal glutenin gene control elements	52.33%
Matrix_16	AT3G04450; PHL1	Not Available	52.16%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.09%
Matrix_324	AT2G01060	Not Available	52.07%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	52.06%
Matrix_411	DOF5.6	Not Available	52.01%
Matrix_264	ATAREB1	Not Available	51.94%
Matrix_408	GATA12	Not Available	51.85%
Matrix_69	AT2G03500	Not Available	51.69%
Matrix_414	AGL15	Not Available	51.68%
Matrix_497	AP3	Not Available	51.53%
Matrix_148	WRKY60	Not Available	51.45%
Matrix_502	AT3G13040	Not Available	51.45%
Motif_143	VND6	Arabidopsis VASCULAR-RELATED NAC-DOMAIN6 directly regulates the genes that govern programmed cell death and secondary wall formation during xylem differentiation	51.33%
Matrix_382	AT3G04850	Not Available	51.28%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	51.16%
Matrix_444	AT1G19485; AT4G17950	Not Available	51.13%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	51.13%
Matrix_302	HAT1; HAT2	Not Available	51.06%
Matrix_99	DOF4.7	Not Available	50.78%
Matrix_206	CUC1; ANAC100	Not Available	50.74%
Matrix_495	HD-GL2-1; ANL2	Not Available	50.62%
Matrix_438	AtbZIP63	Not Available	50.61%
Matrix_116	ANAC55	Not Available	50.52%
Matrix_431	ATHB21; HB-3	Not Available	50.49%
Matrix_299	PFG3	Not Available	50.43%
Matrix_273	ANAC55	Not Available	50.25%
Matrix_220	WRKY18	Not Available	50.23%
Matrix_286	GATA7	Not Available	50.19%
Matrix_420	ANAC58	Not Available	50.16%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	50.11%
Matrix_68	AtMYB77	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84	50.10%
Matrix_47	AtMYB77	Not Available	50.10%
Matrix_494	OBP4	Not Available	50.08%
Matrix_167	ZAT6	Not Available	50.07%
Matrix_236	CCA1	Not Available	50.02%