PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_302
Name: HAT1; HAT2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_71	ATHB7	Not Available	91.32%
Matrix_461	ATHB12	Not Available	87.08%
Matrix_435	ATHB51	Not Available	83.15%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	82.91%
Matrix_93	YAB5	Not Available	76.45%
Matrix_182	ATHB6	Not Available	74.90%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	71.74%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	70.48%
Matrix_512	HAT3	Not Available	70.35%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	69.64%
Matrix_81	YAB1	Not Available	69.63%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	69.51%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	69.43%
Matrix_347	WOX14; WOX10	Not Available	69.16%
Matrix_87	AT1G19000	Not Available	68.75%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	68.52%
Matrix_441	ATHB5	Not Available	67.31%
Matrix_303	ATWOX13	Not Available	67.07%
Matrix_495	HD-GL2-1; ANL2	Not Available	66.65%
Matrix_318	ATHB16	Not Available	66.43%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	66.13%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	65.98%
Motif_41	ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	65.60%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	65.07%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	65.05%
Matrix_157	LHY; RVE2	Not Available	64.96%
Matrix_62	HAT5	Not Available	64.87%
Matrix_274	EDF3	Not Available	64.75%
Matrix_366	ARR14	Not Available	64.66%
Matrix_434	ARR11	Not Available	64.14%
Matrix_431	ATHB21; HB-3	Not Available	63.84%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	63.84%
Matrix_308	INO	Not Available	63.77%
Matrix_408	GATA12	Not Available	63.30%
Matrix_8	KAN1	Not Available	63.21%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	63.17%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	63.07%
Matrix_88	AHL12	Not Available	61.65%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	61.58%
Matrix_212	ATHB-12	Not Available	61.43%
Matrix_483	ICU4	Not Available	61.39%
Matrix_327	ARR11	Not Available	61.35%
Matrix_9	AT5G04760	Not Available	61.05%
Matrix_425	TIFY2A	Not Available	60.85%
Matrix_203	GATA9; GATA12	Not Available	60.65%
Matrix_195	GATA2; GATA4	Not Available	60.49%
Matrix_206	CUC1; ANAC100	Not Available	60.40%
Motif_675	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	60.13%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	60.05%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	59.91%
Matrix_491	AT1G68670; AT3G25790	Not Available	59.87%
Matrix_401	MYB55	Not Available	59.80%
Matrix_12	EIN3; EIL2	Not Available	59.78%
Matrix_505	GATA8	Not Available	59.56%
Matrix_380	ATMYR1	Not Available	59.56%
Matrix_259	AT1G50680; AT1G51120	Not Available	59.53%
Matrix_447	RVE1	Not Available	59.51%
Matrix_429	KAN4	Not Available	59.38%
Matrix_332	SPT; ALC	Not Available	59.36%
Matrix_336	AT5G08520	Not Available	59.35%
Matrix_41	anac058	Not Available	59.23%
Matrix_225	MYB52	Not Available	59.07%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	59.03%
Matrix_97	APRR2	Not Available	58.96%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	58.96%
Matrix_391	AHL20	Not Available	58.80%
Matrix_13	HAT5	Not Available	58.52%
Matrix_69	AT2G03500	Not Available	58.10%
Matrix_21	HSFC1	Not Available	57.98%
Matrix_471	KAN4	Not Available	57.94%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	57.94%
Motif_347	OPAQUE2ZMB32	opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC)	57.70%
Matrix_201	AT1G74840	Not Available	57.56%
Matrix_226	GATA1	Not Available	57.49%
Matrix_249	WRKY11	Not Available	57.49%
Matrix_162	AtPHR1	Not Available	57.47%
Matrix_210	ARR1	Not Available	57.38%
Matrix_218	TIFY2B; TIFY1	Not Available	57.35%
Matrix_114	EPR1; AT3G10113	Not Available	57.30%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	57.26%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	57.26%
Matrix_32	AHL25	Not Available	57.11%
Matrix_500	WRKY43	Not Available	56.88%
Motif_367	FUS3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	56.83%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	56.78%
Matrix_4	ARR14	Not Available	56.70%
Matrix_174	ZAT2	Not Available	56.64%
Matrix_178	HSFB2A	Not Available	56.51%
Matrix_167	ZAT6	Not Available	56.46%
Matrix_54	AHL20	Not Available	56.45%
Matrix_423	AT3G04030	Not Available	56.45%
Matrix_72	CDF2	Not Available	56.45%
Motif_456	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	56.40%
Matrix_16	AT3G04450; PHL1	Not Available	56.39%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	56.25%
Matrix_469	NAC041; NAC083	Not Available	56.17%
Matrix_236	CCA1	Not Available	56.08%
Matrix_233	MYC3	Not Available	56.05%
Matrix_361	AT1G25550	Not Available	56.03%
Matrix_255	cdf3	Not Available	56.03%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	55.78%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	55.76%
Matrix_444	AT1G19485; AT4G17950	Not Available	55.39%
Matrix_350	ARR14	Not Available	55.32%
Matrix_324	AT2G01060	Not Available	55.31%
Matrix_85	SPL5	Not Available	55.28%
Matrix_6	AT1G70000	Not Available	54.91%
Matrix_260	CAMTA3	Not Available	54.80%
Matrix_46	AT4G21895	Not Available	54.74%
Matrix_99	DOF4.7	Not Available	54.72%
Motif_381	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.67%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	54.66%
Matrix_328	AT1G76580	Not Available	54.62%
Matrix_494	OBP4	Not Available	54.56%
Matrix_501	DAG2	Not Available	54.53%
Matrix_168	AHL25	Not Available	54.51%
Matrix_286	GATA7	Not Available	54.49%
Matrix_315	MYB111	Not Available	54.45%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.44%
Matrix_271	AT3G16350	Not Available	54.35%
Matrix_392	ARR2	Not Available	54.30%
Matrix_165	KNAT1	Not Available	54.24%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	54.16%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.09%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	54.03%
Matrix_84	AtGRF6	Not Available	54.03%
Matrix_241	HB-1; AT5G44180	Not Available	54.01%
Matrix_60	AT1G01260; AT5G57150	Not Available	54.00%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	53.86%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	53.85%
Matrix_522	GATA11; GATA13	Not Available	53.80%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.72%
Motif_430	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	53.72%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	53.72%
Matrix_150	UNE10; PIF7	Not Available	53.71%
Matrix_227	AT1G64620	Not Available	53.65%
Matrix_204	WOX13	Not Available	53.55%
Matrix_197	NAP	Not Available	53.51%
Matrix_160	RVE1	Not Available	53.47%
Matrix_129	ABF1	Not Available	53.29%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	53.29%
Matrix_106	AT5G47390	Not Available	53.27%
Matrix_76	GATA10	Not Available	53.25%
Matrix_415	WRKY27	Not Available	53.14%
Matrix_333	GATA3	Not Available	53.13%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	53.12%
Matrix_352	LEC2	Not Available	53.06%
Matrix_320	MYC4	Not Available	52.97%
Matrix_113	ABI5	Not Available	52.94%
Matrix_254	MYB52	Not Available	52.92%
Matrix_65	POC1; PIL1	Not Available	52.92%
Matrix_143	GATA14; GATA6; GATA5	Not Available	52.88%
Matrix_437	MYC2	Not Available	52.87%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	52.76%
Motif_378	WRKY6	Targets of AtWRKY6 regulation during plant senescence and pathogen defense	52.74%
Matrix_185	AHL25	Not Available	52.59%
Matrix_489	RAV1	Not Available	52.59%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	52.55%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.42%
Matrix_141	AT3G25990	Not Available	52.41%
Matrix_211	MYB3	Not Available	52.34%
Matrix_120	BEE2	Not Available	52.31%
Matrix_151	ASIL1	Not Available	52.26%
Matrix_152	EIL1; AT5G65100	Not Available	52.26%
Matrix_125	AHL12	Not Available	52.26%
Matrix_258	WOX13	Not Available	52.23%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.23%
Matrix_490	AtMYB77; ATMYB44	Not Available	52.12%
Matrix_418	KNAT6; KNAT2	Not Available	52.01%
Matrix_142	ZFP8	Not Available	51.99%
Matrix_346	AtMYB70; MYB73	Not Available	51.85%
Matrix_230	ARR11	Not Available	51.81%
Matrix_383	CCA1	Not Available	51.80%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	51.78%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.77%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.77%
Matrix_279	HRS1	Not Available	51.74%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	51.73%
Matrix_70	GATA26	Not Available	51.72%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	51.68%
Motif_40	MRNASTA2CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located near position -30 relative to the AUG initiation codon	51.68%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	51.66%
Matrix_166	TGA4	Not Available	51.56%
Matrix_416	ASL5	Not Available	51.55%
Matrix_337	MYB46	Not Available	51.54%
Matrix_455	MYB111	Not Available	51.53%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	51.53%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.47%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	51.19%
Matrix_37	GATA27	Not Available	51.15%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.11%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	51.10%
Matrix_472	ZN_C2_H2	Not Available	51.06%
Motif_336	MYBMOUSE	Binding site for mouse c-myb protein	51.05%
Matrix_427	ZAT14	Not Available	50.98%
Motif_422	SP8BFIBSP8BIB	One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.97%
Matrix_78	AT3G45610	Not Available	50.94%
Matrix_502	AT3G13040	Not Available	50.93%
Matrix_137	SPL1; SPL12	Not Available	50.92%
Matrix_465	MYC4	Not Available	50.86%
Motif_667	TATABOXOSPAL	Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter	50.78%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.78%
Matrix_27	ATAIB; ATNIG1	Not Available	50.68%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	50.65%
Matrix_330	MYC2; TT8	Not Available	50.64%
Matrix_311	TGA1	Not Available	50.60%
Matrix_181	Dof5.7	Not Available	50.51%
Matrix_145	GBF4; AT5G44080	Not Available	50.51%
Motif_221	MYBCORE	Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis	50.48%
Matrix_367	REM1	Not Available	50.46%
Matrix_519	ATDOF2.4	Not Available	50.31%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.29%
Matrix_25	AP3	Not Available	50.23%
Matrix_64	PIF5	Not Available	50.22%
Matrix_139	OBF5	Not Available	50.15%
Matrix_240	AT4G29000	Not Available	50.15%
Matrix_479	TOE1	Not Available	50.13%
Matrix_449	BIM2	Not Available	50.13%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	50.08%
Matrix_63	ARR10	Not Available	50.07%
Matrix_504	WRKY40	Not Available	50.03%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	50.01%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	50.00%