PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_299
Name: PFG3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_337	MYB46	Not Available	85.23%
Matrix_315	MYB111	Not Available	84.06%
Matrix_211	MYB3	Not Available	81.76%
Matrix_455	MYB111	Not Available	80.17%
Matrix_424	MYB59	Not Available	79.57%
Matrix_401	MYB55	Not Available	69.71%
Matrix_225	MYB52	Not Available	66.93%
Matrix_371	MYB7; AtMYB6; AtMYB32; ATMYB4	Not Available	66.86%
Matrix_469	NAC041; NAC083	Not Available	65.68%
Matrix_492	ETT	Not Available	65.53%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	63.60%
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	63.17%
Matrix_450	SPL7	Not Available	62.12%
Matrix_307	RGL2; RGL3	Not Available	61.98%
Matrix_31	SPL1	Not Available	61.67%
Matrix_398	TBP2; ATTRB2	Not Available	61.48%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	61.43%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	61.35%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	61.24%
Motif_662	MYB26PS	Myb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragon	61.23%
Motif_284	GT-2	DNA binding factor GT-2 from Arabidopsis	60.83%
Matrix_85	SPL5	Not Available	60.17%
Matrix_313	ATMYB65; MYB33	Not Available	60.08%
Matrix_173	ZAP1	Not Available	59.78%
Matrix_188	SPL4	Not Available	59.60%
Matrix_331	GBF1	Not Available	59.16%
Matrix_502	AT3G13040	Not Available	58.80%
Matrix_221	SPL7	Not Available	58.74%
Matrix_433	ATERF1	Not Available	58.61%
Matrix_109	GBF3	Not Available	58.53%
Matrix_137	SPL1; SPL12	Not Available	57.50%
Motif_329	AMMORESIIUDCRNIA1	Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activation	57.50%
Matrix_448	ATERF6	Not Available	57.36%
Matrix_11	TRFL5	Not Available	56.78%
Matrix_227	AT1G64620	Not Available	56.76%
Matrix_404	OBP4	Not Available	56.69%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	56.58%
Motif_17	AUXRETGA1GMGH3	TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts	56.56%
Matrix_518	AT2G21230	Not Available	56.34%
Matrix_253	ETT	Not Available	56.28%
Matrix_41	anac058	Not Available	56.19%
Matrix_206	CUC1; ANAC100	Not Available	56.19%
Matrix_156	POC1	Not Available	56.16%
Matrix_80	BIM1	Not Available	56.01%
Matrix_501	DAG2	Not Available	55.93%
Motif_322	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.88%
Matrix_151	ASIL1	Not Available	55.59%
Matrix_447	RVE1	Not Available	55.54%
Matrix_59	AT4G00238; AT4G00250	Not Available	55.46%
Matrix_72	CDF2	Not Available	55.04%
Motif_485	NRRBNEXTA	NRR (negative regulatory region) in promoter region of Brassica napus extA extensin gene; Removal of this region leads to expression in all tissues within the stem internode, petiole and root	55.02%
Motif_304	SRENTTTO1	Stress responsive element (SRE) in tobacco retrotransposon Tto1; A 13 bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1; Involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors; Contains a conserved motif, Box L	54.99%
Matrix_355	ERF10; ERF11	Not Available	54.96%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	54.62%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	54.56%
Matrix_10	STY1	Not Available	54.49%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	54.45%
Matrix_273	ANAC55	Not Available	54.42%
Matrix_308	INO	Not Available	54.35%
Matrix_415	WRKY27	Not Available	54.34%
Matrix_12	EIN3; EIL2	Not Available	54.15%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.12%
Matrix_500	WRKY43	Not Available	54.09%
Matrix_425	TIFY2A	Not Available	54.05%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	54.05%
Matrix_277	RAP2.6	Not Available	53.83%
Matrix_93	YAB5	Not Available	53.68%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	53.61%
Matrix_505	GATA8	Not Available	53.57%
Matrix_392	ARR2	Not Available	53.40%
Matrix_37	GATA27	Not Available	53.27%
Matrix_504	WRKY40	Not Available	53.15%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	52.92%
Matrix_14	ZCW32; AT5G62610	Not Available	52.90%
Matrix_197	NAP	Not Available	52.87%
Motif_1	GT1CORE	Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex	52.77%
Matrix_279	HRS1	Not Available	52.74%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	52.67%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	52.48%
Matrix_293	WRKY38	Not Available	52.43%
Matrix_171	LBD3; LBD4	Not Available	52.42%
Matrix_271	AT3G16350	Not Available	52.41%
Matrix_249	WRKY11	Not Available	52.17%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.12%
Matrix_181	Dof5.7	Not Available	52.07%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	52.06%
Motif_261	S1FBOXSORPS1L21	S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity	51.78%
Matrix_50	ATERF14; AT5G43410	Not Available	51.74%
Matrix_286	GATA7	Not Available	51.70%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	51.60%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	51.60%
Motif_323	MYB1LEPR	Tomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))	51.51%
Matrix_226	GATA1	Not Available	51.45%
Matrix_282	bZIP60	Not Available	51.39%
Matrix_494	OBP4	Not Available	51.34%
Matrix_152	EIL1; AT5G65100	Not Available	51.29%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	51.28%
Matrix_127	AtMYB15	More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	51.28%
Matrix_496	ATMYB15	Not Available	51.28%
Matrix_376	WRKY45	Not Available	51.23%
Matrix_329	WRKY12	Not Available	51.18%
Matrix_390	GT-1	Not Available	51.16%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.05%
Matrix_135	ABI3	Not Available	51.03%
Matrix_228	TGA2	Not Available	51.03%
Matrix_70	GATA26	Not Available	50.96%
Matrix_170	AT5G47660	Not Available	50.80%
Motif_210	REBETALGLHCB21	REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation	50.77%
Matrix_510	AtMYB84	More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana	50.77%
Matrix_179	AtMYB84; MYB36; MYB68; O49746_ARATH	Not Available	50.77%
Matrix_420	ANAC58	Not Available	50.72%
Motif_250	ACGTOSGLUB1	ACGT motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Conserved in the 5'-flanking region of glutelin genes; Combination of GCN4, AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression	50.62%
Matrix_289	WRKY25	Not Available	50.60%
Matrix_421	GLK1	Not Available	50.56%
Matrix_6	AT1G70000	Not Available	50.56%
Matrix_296	GBF2	Not Available	50.55%
Matrix_460	NAM; anac025; ATNAC2	Not Available	50.44%
Matrix_391	AHL20	Not Available	50.29%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	50.23%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	50.18%
Matrix_195	GATA2; GATA4	Not Available	50.12%
Matrix_46	AT4G21895	Not Available	50.09%
Matrix_236	CCA1	Not Available	50.05%
Matrix_453	EIL3	Not Available	50.03%