PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_289
Name: WRKY25
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	95.16%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	94.26%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	91.98%
Matrix_245	WRKY62; WRKY38	Not Available	91.61%
Matrix_504	WRKY40	Not Available	82.01%
Matrix_390	GT-1	Not Available	78.01%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	72.88%
Matrix_197	NAP	Not Available	69.80%
Matrix_470	WRKY18	Not Available	68.83%
Matrix_220	WRKY18	Not Available	66.57%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	66.36%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	65.99%
Motif_286	SEBFCONSSTPR10A	Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element	65.06%
Matrix_415	WRKY27	Not Available	64.67%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	63.89%
Matrix_102	WRKY21	Not Available	62.95%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	62.53%
Matrix_281	TCP13	Not Available	62.32%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	61.76%
Matrix_294	MEE35	Not Available	60.25%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	60.11%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	59.98%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	59.28%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	59.27%
Motif_375	ERELEE4	ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region	59.23%
Matrix_94	TCP5	Not Available	58.99%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	58.84%
Motif_26	GRF7	Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A	58.37%
Matrix_148	WRKY60	Not Available	58.24%
Matrix_334	AT3G23230	Not Available	58.21%
Matrix_170	AT5G47660	Not Available	58.20%
Motif_1	GT1CORE	Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex	58.12%
Matrix_500	WRKY43	Not Available	58.11%
Matrix_139	OBF5	Not Available	57.82%
Matrix_82	TCP17	Not Available	57.68%
Motif_525	CRTDREHVCBF2	Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature	57.61%
Matrix_249	WRKY11	Not Available	56.94%
Matrix_384	ATWRKY17	Not Available	56.91%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	56.89%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	56.61%
Motif_562	-300CORE	TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors	56.37%
Matrix_370	WRKY50; WRKY51	Not Available	56.29%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	56.18%
Matrix_165	KNAT1	Not Available	56.05%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	56.03%
Matrix_3	WRKY48	Not Available	56.00%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	55.52%
Motif_287	BIHD1OS	Binding site of OsBIHD1, a rice BELL homeodomain transcription factor	54.95%
Motif_392	PALBOXAPC	Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L	54.55%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	54.55%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	54.40%
Motif_491	GT-1	Molecular dissection of GT-1 from Arabidopsis	53.90%
Motif_453	HEXMOTIFTAH3H4	hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site	53.87%
Matrix_505	GATA8	Not Available	53.78%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.64%
Motif_543	TATCCACHVAL21	TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response	53.41%
Motif_307	TATCCAYMOTIFOSRAMY3D	TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression	53.15%
Matrix_506	DRNL; ATERF-4	Not Available	52.57%
Matrix_85	SPL5	Not Available	52.47%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	52.42%
Matrix_163	AT2G20110	Not Available	52.02%
Matrix_166	TGA4	Not Available	52.01%
Motif_365	ARF1 binding site motif	ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors	51.96%
Motif_199	GCN4OSGLUB1	GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression	51.63%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	51.54%
Matrix_513	SOL1; TSO1; TCX2	Not Available	51.40%
Matrix_216	TCP16	Not Available	51.10%
Matrix_76	GATA10	Not Available	51.00%
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	50.95%
Matrix_426	CRF1; CRF2	Not Available	50.92%
Matrix_253	ETT	Not Available	50.72%
Matrix_432	AT1G77920	Not Available	50.66%
Matrix_75	WRKY29	Not Available	50.64%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.52%
Matrix_218	TIFY2B; TIFY1	Not Available	50.49%
Motif_437	ANAERO2CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)	50.43%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	50.34%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.18%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.17%