PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_281
Name: TCP13
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_94	TCP5	Not Available	93.28%
Matrix_294	MEE35	Not Available	91.96%
Matrix_82	TCP17	Not Available	90.45%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	65.35%
Matrix_507	TCP3	Not Available	63.57%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	63.52%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	63.52%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	63.07%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	62.92%
Matrix_289	WRKY25	Not Available	62.32%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	60.31%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	60.29%
Matrix_165	KNAT1	Not Available	60.12%
Matrix_297	TCP15	Not Available	59.89%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	59.70%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	59.70%
Motif_622	SORLIP2AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	59.58%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	58.97%
Matrix_504	WRKY40	Not Available	58.64%
Matrix_245	WRKY62; WRKY38	Not Available	58.54%
Matrix_130	TCP16	Not Available	58.47%
Matrix_137	SPL1; SPL12	Not Available	58.44%
Motif_459	SORLIP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	58.26%
Matrix_42	AT2G45680	Not Available	57.90%
Matrix_232	TCP23	Not Available	57.69%
Matrix_216	TCP16	Not Available	57.68%
Matrix_482	AT2G25650; AT4G00270	Not Available	57.63%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	57.29%
Matrix_348	AT5G51910	Not Available	56.82%
Motif_545	SORLIP1AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; SORLIP 1 is most over-represented, and most statistically singnificant; Over-represented in light-induced cotyledon and root common genes and root-specific genes	56.60%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	55.46%
Matrix_40	TCP2	Not Available	55.46%
Motif_135	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	54.88%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	54.54%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	53.58%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	53.49%
Matrix_144	AT5G08330; AT5G23280	Not Available	53.30%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	53.08%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	53.06%
Matrix_390	GT-1	Not Available	52.10%
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	52.09%
Motif_270	ELRECOREPCRP1	ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis	51.88%
Matrix_334	AT3G23230	Not Available	51.84%
Motif_391	REALPHALGLHCB21	REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation	51.76%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.73%
Motif_205	WRKY43; WRKY38; WRKY26; WRKY11	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.73%
Matrix_282	bZIP60	Not Available	51.38%
Matrix_196	TCP20; AT5G41030	Not Available	51.21%
Motif_603	SITEIIATCYTC	Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice	51.09%
Matrix_221	SPL7	Not Available	50.89%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	50.83%
Motif_469	QELEMENTZMZM13	Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene	50.73%
Motif_305	SP1SV40	SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	50.69%
Matrix_505	GATA8	Not Available	50.62%
Motif_80	AP1SV40	AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	50.54%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	50.27%
Matrix_85	SPL5	Not Available	50.09%