PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_272
Name: DEAR4
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_146	ORA47	Not Available	90.45%
Matrix_252	RAP2.6	Not Available	87.89%
Matrix_473	RRTF1	Not Available	86.86%
Matrix_378	ATERF1	Not Available	85.70%
Matrix_234	RAP2.3	Not Available	85.37%
Matrix_343	AT2G33710	Not Available	80.81%
Matrix_190	ATERF1	Not Available	78.54%
Matrix_287	ERF2	Not Available	74.03%
Matrix_86	CRF5; CRF6; CRF4	Not Available	72.55%
Matrix_138	RRTF1	Not Available	72.18%
Matrix_506	DRNL; ATERF-4	Not Available	72.02%
Matrix_426	CRF1; CRF2	Not Available	71.72%
Matrix_101	ERF5	Not Available	70.90%
Matrix_405	DREB2C	Not Available	70.83%
Matrix_261	ATERF-1	Not Available	69.73%
Matrix_91	CRF3	Not Available	69.09%
Matrix_147	ERF3; AT1G80580	Not Available	68.93%
Matrix_45	DRN	Not Available	68.74%
Matrix_484	ATERF13	Not Available	68.64%
Matrix_493	AT1G22985; AT1G71130	Not Available	68.47%
Matrix_119	RRTF1	Not Available	68.33%
Matrix_321	HRD	Not Available	67.88%
Matrix_360	ORA59	Not Available	67.83%
Matrix_362	DEAR3	Not Available	67.76%
Matrix_224	ERF1	Not Available	67.31%
Matrix_288	RAP2.3	Not Available	67.18%
Matrix_295	ERF1	Not Available	67.15%
Matrix_363	RAP2.3	Not Available	67.02%
Matrix_517	ERF12	Not Available	66.98%
Matrix_409	DEAR3	Not Available	66.92%
Matrix_50	ATERF14; AT5G43410	Not Available	66.82%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	66.18%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	64.86%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	64.86%
Matrix_196	TCP20; AT5G41030	Not Available	64.17%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	63.80%
Matrix_334	AT3G23230	Not Available	63.72%
Matrix_448	ATERF6	Not Available	63.53%
Matrix_277	RAP2.6	Not Available	63.10%
Matrix_374	AT5G07580; AT5G61590	Not Available	63.09%
Matrix_57	WIN1; SHN3; SHN2	Not Available	62.61%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	62.23%
Matrix_355	ERF10; ERF11	Not Available	61.25%
Matrix_344	ATERF15; AT4G18450	Not Available	60.99%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	60.57%
Matrix_475	AT5G64220	Not Available	60.26%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	60.04%
Matrix_61	ATCBF3	Not Available	59.95%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	59.94%
Matrix_187	CDC5	Not Available	59.91%
Matrix_349	CDC5	Not Available	59.91%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	59.85%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	59.82%
Matrix_385	DEAR4	Not Available	59.72%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	59.65%
Matrix_209	RAP2.6	Not Available	59.56%
Matrix_5	AT5G51190; ERF104	Not Available	59.54%
Matrix_297	TCP15	Not Available	59.32%
Matrix_171	LBD3; LBD4	Not Available	59.14%
Matrix_433	ATERF1	Not Available	58.94%
Motif_320	AGCBOXNPGLB	AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box	58.83%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	58.73%
Matrix_169	E2F1	Not Available	58.41%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	58.37%
Matrix_59	AT4G00238; AT4G00250	Not Available	58.13%
Matrix_418	KNAT6; KNAT2	Not Available	58.09%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	57.99%
Matrix_232	TCP23	Not Available	57.86%
Matrix_92	AT1G33760	Not Available	57.85%
Matrix_507	TCP3	Not Available	57.70%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	57.70%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	57.53%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	57.36%
Matrix_244	DREB2C	Not Available	57.25%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	57.23%
Matrix_110	ATABI4; AT3G57600	Not Available	57.12%
Matrix_452	MYB46	Not Available	56.55%
Matrix_285	DDF1	Not Available	56.53%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	55.97%
Matrix_243	RAP2.12; RAP2.2	Not Available	55.86%
Matrix_135	ABI3	Not Available	55.79%
Motif_444	OCTAMOTIF2	Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes	55.50%
Matrix_3	WRKY48	Not Available	55.36%
Matrix_457	TGA2	Not Available	55.18%
Motif_191	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.15%
Matrix_373	E2FE	Not Available	55.10%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	55.09%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	54.95%
Matrix_489	RAV1	Not Available	54.85%
Matrix_41	anac058	Not Available	54.83%
Matrix_206	CUC1; ANAC100	Not Available	54.78%
Matrix_144	AT5G08330; AT5G23280	Not Available	54.78%
Motif_313	ERF1 BS in AtCHI-B	Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature	54.76%
Matrix_406	ATERF-7	Not Available	54.67%
Matrix_331	GBF1	Not Available	54.63%
Matrix_102	WRKY21	Not Available	54.49%
Matrix_394	DREB_U	Not Available	54.38%
Matrix_389	ILR3	Not Available	54.34%
Matrix_339	bHLH104	Not Available	54.25%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	54.08%
Matrix_482	AT2G25650; AT4G00270	Not Available	54.04%
Matrix_300	bZIP68; bZIP16	Not Available	54.01%
Motif_318	CGCGBOXAT	CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs	53.96%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.84%
Motif_555	ABRECE3ZMRAB28	CE3 (coupling element 3) in maize rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See ABRECE3HVA1; Found at -126 to -115	53.81%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	53.58%
Matrix_296	GBF2	Not Available	53.54%
Matrix_75	WRKY29	Not Available	53.47%
Matrix_450	SPL7	Not Available	53.34%
Matrix_69	AT2G03500	Not Available	53.29%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	53.29%
Matrix_186	FHY3	Not Available	53.25%
Matrix_79	FUS3	Not Available	53.22%
Matrix_348	AT5G51910	Not Available	53.21%
Matrix_462	ATERF-8	Not Available	53.21%
Matrix_323	BIM3	Not Available	53.20%
Matrix_456	bZIP60	Not Available	53.18%
Motif_372	E2FAT	E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression	53.16%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	52.86%
Matrix_478	AT1G01250	Not Available	52.81%
Matrix_109	GBF3	Not Available	52.79%
Matrix_384	ATWRKY17	Not Available	52.67%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	52.67%
Matrix_17	WRKY22	Not Available	52.64%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	52.60%
Matrix_415	WRKY27	Not Available	52.53%
Matrix_210	ARR1	Not Available	52.43%
Matrix_330	MYC2; TT8	Not Available	52.39%
Matrix_151	ASIL1	Not Available	52.38%
Matrix_420	ANAC58	Not Available	52.31%
Matrix_162	AtPHR1	Not Available	52.29%
Matrix_370	WRKY50; WRKY51	Not Available	52.18%
Matrix_42	AT2G45680	Not Available	52.16%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	52.14%
Matrix_40	TCP2	Not Available	52.07%
Matrix_4	ARR14	Not Available	52.05%
Matrix_188	SPL4	Not Available	52.02%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	51.98%
Matrix_313	ATMYB65; MYB33	Not Available	51.97%
Matrix_465	MYC4	Not Available	51.95%
Matrix_16	AT3G04450; PHL1	Not Available	51.94%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.93%
Motif_463	GRAZMRAB17	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab17 gene from maize; Important for transcription in leaves but not in embryos	51.91%
Matrix_449	BIM2	Not Available	51.90%
Matrix_329	WRKY12	Not Available	51.77%
Matrix_221	SPL7	Not Available	51.74%
Motif_13	E2F-varient binding site motif	A genome-wide identification of E2F-regulated genes in Arabidopsis	51.62%
Matrix_260	CAMTA3	Not Available	51.54%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	51.51%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	51.50%
Matrix_491	AT1G68670; AT3G25790	Not Available	51.49%
Matrix_14	ZCW32; AT5G62610	Not Available	51.46%
Matrix_197	NAP	Not Available	51.43%
Motif_354	VSF1PVGRP18	VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression	51.41%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	51.36%
Matrix_175	Dof5.7	Not Available	51.31%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	51.31%
Matrix_423	AT3G04030	Not Available	51.27%
Matrix_141	AT3G25990	Not Available	51.21%
Matrix_120	BEE2	Not Available	51.20%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	51.14%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.08%
Matrix_281	TCP13	Not Available	50.88%
Matrix_467	RAV1	Not Available	50.85%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.85%
Matrix_477	RAV1	Not Available	50.85%
Matrix_324	AT2G01060	Not Available	50.75%
Matrix_361	AT1G25550	Not Available	50.63%
Matrix_53	MYC3	Not Available	50.60%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.58%
Matrix_469	NAC041; NAC083	Not Available	50.54%
Matrix_399	TGA1	Not Available	50.42%
Matrix_80	BIM1	Not Available	50.34%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	50.32%
Matrix_307	RGL2; RGL3	Not Available	50.31%
Matrix_293	WRKY38	Not Available	50.20%
Matrix_216	TCP16	Not Available	50.16%