Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 78.64% |
Motif_264 | GCBP2ZMGAPC4 | Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285 | | 77.20% |
Matrix_40 | TCP2 | Not Available | | 77.10% |
Matrix_42 | AT2G45680 | Not Available | | 70.97% |
Motif_650 | SITEIIAOSPCNA | Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4 | | 70.28% |
Matrix_348 | AT5G51910 | Not Available | | 70.07% |
Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 69.65% |
Motif_219 | E2Fa | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 68.97% |
Matrix_507 | TCP3 | Not Available | | 67.71% |
Matrix_281 | TCP13 | Not Available | | 65.83% |
Matrix_130 | TCP16 | Not Available | | 65.67% |
Matrix_297 | TCP15 | Not Available | | 64.90% |
Matrix_94 | TCP5 | Not Available | | 64.60% |
Matrix_294 | MEE35 | Not Available | | 63.52% |
Motif_684 | MNF1ZMPPC1 | MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction | | 63.45% |
Matrix_82 | TCP17 | Not Available | | 63.37% |
Matrix_482 | AT2G25650; AT4G00270 | Not Available | | 61.45% |
Matrix_463 | HAT3.1 | Not Available | | 61.31% |
Matrix_232 | TCP23 | Not Available | | 61.28% |
Matrix_481 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | | 60.66% |
Matrix_290 | AP2 | Not Available | | 60.45% |
Matrix_230 | ARR11 | Not Available | | 59.66% |
Motif_610 | GATA-2; GATA-4; GATA-3; GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 58.98% |
Matrix_196 | TCP20; AT5G41030 | Not Available | | 58.94% |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | | 58.74% |
Matrix_190 | ATERF1 | Not Available | | 58.67% |
Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 58.57% |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | | 58.49% |
Motif_337 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 58.07% |
Matrix_165 | KNAT1 | Not Available | | 57.98% |
Matrix_350 | ARR14 | Not Available | | 57.49% |
Matrix_224 | ERF1 | Not Available | | 57.28% |
Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 57.05% |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 56.92% |
Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 56.81% |
Matrix_216 | TCP16 | Not Available | | 56.55% |
Matrix_69 | AT2G03500 | Not Available | | 56.28% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 55.81% |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | | 55.79% |
Matrix_3 | WRKY48 | Not Available | | 55.74% |
Matrix_195 | GATA2; GATA4 | Not Available | | 55.67% |
Matrix_288 | RAP2.3 | Not Available | | 55.59% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 55.35% |
Matrix_418 | KNAT6; KNAT2 | Not Available | | 55.32% |
Motif_648 | ARE2 | ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1 | | 55.13% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 55.07% |
Matrix_169 | E2F1 | Not Available | | 54.86% |
Matrix_470 | WRKY18 | Not Available | | 54.82% |
Matrix_220 | WRKY18 | Not Available | | 54.73% |
Matrix_52 | ZAT18 | Not Available | | 54.59% |
Matrix_50 | ATERF14; AT5G43410 | Not Available | | 54.43% |
Matrix_361 | AT1G25550 | Not Available | | 54.33% |
Motif_52 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 54.17% |
Matrix_234 | RAP2.3 | Not Available | | 54.16% |
Matrix_408 | GATA12 | Not Available | | 54.01% |
Matrix_38 | SPL14 | Not Available | | 53.95% |
Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 53.94% |
Matrix_226 | GATA1 | Not Available | | 53.84% |
Motif_381 | GATA-2; GATA-4; GATA-3; GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 53.75% |
Matrix_148 | WRKY60 | Not Available | | 53.62% |
Motif_413 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 53.62% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 53.59% |
Matrix_328 | AT1G76580 | Not Available | | 53.56% |
Matrix_324 | AT2G01060 | Not Available | | 53.52% |
Matrix_162 | AtPHR1 | Not Available | | 53.51% |
Matrix_101 | ERF5 | Not Available | | 53.50% |
Motif_386 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 53.37% |
Motif_256 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | | 53.34% |
Motif_366 | RE1ASPHYA3 | RE1 (putative repressor element) responsible for Pfr-directed repression of oat phyA3 phytochrome gene; Also found in pea AS1 (asparagine synthetase) gene | | 53.34% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 53.22% |
Motif_132 | PIATGAPB | PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | | 53.14% |
Matrix_286 | GATA7 | Not Available | | 53.10% |
Matrix_197 | NAP | Not Available | | 53.01% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 52.95% |
Motif_379 | ABRECE1HVA22 | CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1 | | 52.91% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 52.87% |
Matrix_287 | ERF2 | Not Available | | 52.70% |
Motif_512 | GLMHVCHORD | GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter | | 52.68% |
Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 52.67% |
Matrix_102 | WRKY21 | Not Available | | 52.60% |
Motif_636 | AMMORESVDCRNIA1 | Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation | | 52.57% |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 52.54% |
Matrix_75 | WRKY29 | Not Available | | 52.50% |
Matrix_505 | GATA8 | Not Available | | 52.34% |
Matrix_17 | WRKY22 | Not Available | | 52.13% |
Matrix_271 | AT3G16350 | Not Available | | 51.91% |
Matrix_502 | AT3G13040 | Not Available | | 51.86% |
Motif_462 | TE2F2NTPCNA | te2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue | | 51.80% |
Motif_205 | WRKY43; WRKY38; WRKY26; WRKY11 | Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 51.77% |
Matrix_85 | SPL5 | Not Available | | 51.73% |
Matrix_91 | CRF3 | Not Available | | 51.71% |
Matrix_363 | RAP2.3 | Not Available | | 51.69% |
Matrix_343 | AT2G33710 | Not Available | | 51.68% |
Motif_663 | E2F binding site motif; E2F/DP BS in AtCDC6 | Not Available | | 51.63% |
Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 51.58% |
Matrix_252 | RAP2.6 | Not Available | | 51.56% |
Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 51.35% |
Matrix_450 | SPL7 | Not Available | | 51.26% |
Motif_680 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 51.25% |
Motif_29 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | | 51.21% |
Matrix_405 | DREB2C | Not Available | | 51.20% |
Motif_378 | WRKY6 | Targets of AtWRKY6 regulation during plant senescence and pathogen defense | | 51.11% |
Motif_135 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 51.11% |
Matrix_282 | bZIP60 | Not Available | | 51.08% |
Matrix_97 | APRR2 | Not Available | | 51.05% |
Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 51.04% |
Matrix_384 | ATWRKY17 | Not Available | | 51.02% |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 50.91% |
Matrix_415 | WRKY27 | Not Available | | 50.88% |
Matrix_433 | ATERF1 | Not Available | | 50.86% |
Matrix_473 | RRTF1 | Not Available | | 50.74% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 50.67% |
Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | | 50.64% |
Motif_374 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | | 50.59% |
Matrix_355 | ERF10; ERF11 | Not Available | | 50.56% |
Motif_596 | WRKY11 | Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function | | 50.50% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 50.27% |
Matrix_67 | GLK1 | Not Available | | 50.23% |
Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 50.19% |
Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 50.16% |
Motif_31 | UPRE1AT | ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | | 50.12% |