| Matrix_99 | DOF4.7 | Not Available | | 69.81% |
| Matrix_336 | AT5G08520 | Not Available | | 69.37% |
| Matrix_152 | EIL1; AT5G65100 | Not Available | | 69.32% |
| Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 68.08% |
| Matrix_78 | AT3G45610 | Not Available | | 65.91% |
| Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 65.75% |
| Matrix_157 | LHY; RVE2 | Not Available | | 65.05% |
| Matrix_237 | MYB55 | Not Available | | 64.71% |
| Matrix_177 | ADOF2 | Not Available | | 64.70% |
| Matrix_46 | AT4G21895 | Not Available | | 64.14% |
| Matrix_84 | AtGRF6 | Not Available | | 63.43% |
| Matrix_142 | ZFP8 | Not Available | | 63.03% |
| Matrix_515 | ddf2; ATCBF3; CBF1; CBF4 | Not Available | | 62.84% |
| Matrix_97 | APRR2 | Not Available | | 62.74% |
| Matrix_9 | AT5G04760 | Not Available | | 62.69% |
| Matrix_254 | MYB52 | Not Available | | 62.68% |
| Matrix_486 | MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 62.34% |
| Motif_254 | MYB46; MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 62.34% |
| Matrix_400 | MYB46 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | | 62.34% |
| Matrix_423 | AT3G04030 | Not Available | | 62.30% |
| Matrix_296 | GBF2 | Not Available | | 62.28% |
| Matrix_341 | HMGA | Not Available | | 62.18% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 61.98% |
| Matrix_248 | ZFP5 | Not Available | | 61.96% |
| Matrix_271 | AT3G16350 | Not Available | | 61.87% |
| Matrix_300 | bZIP68; bZIP16 | Not Available | | 61.20% |
| Matrix_411 | DOF5.6 | Not Available | | 60.70% |
| Matrix_230 | ARR11 | Not Available | | 60.45% |
| Matrix_328 | AT1G76580 | Not Available | | 60.01% |
| Matrix_292 | FTQ4 | Not Available | | 59.49% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 59.32% |
| Matrix_38 | SPL14 | Not Available | | 59.20% |
| Matrix_249 | WRKY11 | Not Available | | 59.10% |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 59.06% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 58.93% |
| Matrix_210 | ARR1 | Not Available | | 58.78% |
| Matrix_227 | AT1G64620 | Not Available | | 58.64% |
| Matrix_4 | ARR14 | Not Available | | 58.58% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 58.52% |
| Matrix_286 | GATA7 | Not Available | | 58.39% |
| Matrix_415 | WRKY27 | Not Available | | 58.33% |
| Matrix_69 | AT2G03500 | Not Available | | 58.19% |
| Matrix_519 | ATDOF2.4 | Not Available | | 58.16% |
| Matrix_226 | GATA1 | Not Available | | 58.10% |
| Matrix_350 | ARR14 | Not Available | | 58.03% |
| Matrix_126 | RBE | Not Available | | 57.96% |
| Matrix_406 | ATERF-7 | Not Available | | 57.91% |
| Matrix_182 | ATHB6 | Not Available | | 57.90% |
| Matrix_308 | INO | Not Available | | 57.81% |
| Matrix_100 | AT1G48610 | Not Available | | 57.69% |
| Matrix_500 | WRKY43 | Not Available | | 57.67% |
| Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 57.65% |
| Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 57.52% |
| Motif_419 | MYB4 binding site motif | Not Available | | 57.35% |
| Matrix_462 | ATERF-8 | Not Available | | 57.25% |
| Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 57.19% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 57.11% |
| Matrix_162 | AtPHR1 | Not Available | | 56.95% |
| Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 56.83% |
| Matrix_106 | AT5G47390 | Not Available | | 56.81% |
| Matrix_85 | SPL5 | Not Available | | 56.77% |
| Matrix_436 | AT3G49930; AZF1 | Not Available | | 56.73% |
| Matrix_387 | ORA47 | Not Available | | 56.68% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 56.62% |
| Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 56.61% |
| Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 56.48% |
| Motif_58 | LREBOXIPCCHS1 | BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat | | 56.45% |
| Matrix_409 | DEAR3 | Not Available | | 56.44% |
| Matrix_379 | RHL41 | Not Available | | 56.40% |
| Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 56.40% |
| Matrix_12 | EIN3; EIL2 | Not Available | | 56.40% |
| Matrix_239 | AT5G04390 | Not Available | | 56.37% |
| Motif_426 | MYB58; MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | | 56.25% |
| Matrix_37 | GATA27 | Not Available | | 56.18% |
| Matrix_487 | AT1G29160 | Not Available | | 56.06% |
| Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 55.98% |
| Matrix_361 | AT1G25550 | Not Available | | 55.88% |
| Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 55.80% |
| Matrix_502 | AT3G13040 | Not Available | | 55.70% |
| Motif_533 | Bellringer/replumless/pennywise BS3 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 55.65% |
| Matrix_197 | NAP | Not Available | | 55.46% |
| Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 55.10% |
| Matrix_16 | AT3G04450; PHL1 | Not Available | | 55.06% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 54.84% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 54.72% |
| Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 54.64% |
| Matrix_463 | HAT3.1 | Not Available | | 54.56% |
| Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 54.54% |
| Matrix_255 | cdf3 | Not Available | | 54.54% |
| Matrix_418 | KNAT6; KNAT2 | Not Available | | 54.49% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 54.42% |
| Matrix_494 | OBP4 | Not Available | | 54.42% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 54.38% |
| Matrix_96 | TMO6 | Not Available | | 54.19% |
| Matrix_447 | RVE1 | Not Available | | 54.14% |
| Matrix_91 | CRF3 | Not Available | | 54.11% |
| Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 53.91% |
| Matrix_324 | AT2G01060 | Not Available | | 53.89% |
| Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 53.88% |
| Matrix_416 | ASL5 | Not Available | | 53.82% |
| Matrix_53 | MYC3 | Not Available | | 53.67% |
| Matrix_446 | LBD16 | Not Available | | 53.61% |
| Matrix_260 | CAMTA3 | Not Available | | 53.59% |
| Matrix_380 | ATMYR1 | Not Available | | 53.53% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 53.50% |
| Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 53.48% |
| Matrix_393 | REM1 | Not Available | | 53.37% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 53.35% |
| Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 53.26% |
| Motif_564 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 53.18% |
| Matrix_70 | GATA26 | Not Available | | 53.14% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 53.08% |
| Matrix_180 | SPL1 | Not Available | | 53.06% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 52.92% |
| Matrix_17 | WRKY22 | Not Available | | 52.79% |
| Matrix_196 | TCP20; AT5G41030 | Not Available | | 52.77% |
| Matrix_92 | AT1G33760 | Not Available | | 52.76% |
| Matrix_274 | EDF3 | Not Available | | 52.74% |
| Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | | 52.74% |
| Matrix_489 | RAV1 | Not Available | | 52.72% |
| Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 52.63% |
| Matrix_62 | HAT5 | Not Available | | 52.46% |
| Matrix_261 | ATERF-1 | Not Available | | 52.40% |
| Matrix_451 | STY1 | Not Available | | 52.37% |
| Matrix_72 | CDF2 | Not Available | | 52.35% |
| Matrix_218 | TIFY2B; TIFY1 | Not Available | | 52.22% |
| Matrix_137 | SPL1; SPL12 | Not Available | | 52.19% |
| Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | | 52.06% |
| Matrix_450 | SPL7 | Not Available | | 51.95% |
| Matrix_319 | TEM1 | Not Available | | 51.95% |
| Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 51.92% |
| Matrix_258 | WOX13 | Not Available | | 51.78% |
| Matrix_425 | TIFY2A | Not Available | | 51.64% |
| Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 51.36% |
| Matrix_382 | AT3G04850 | Not Available | | 51.28% |
| Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | | 51.27% |
| Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | | 51.25% |
| Matrix_392 | ARR2 | Not Available | | 51.23% |
| Matrix_151 | ASIL1 | Not Available | | 51.21% |
| Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | | 51.11% |
| Matrix_75 | WRKY29 | Not Available | | 51.03% |
| Matrix_212 | ATHB-12 | Not Available | | 51.03% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 50.98% |
| Motif_172 | MYB98 | MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins | | 50.92% |
| Matrix_159 | TEM2 | Not Available | | 50.77% |
| Matrix_408 | GATA12 | Not Available | | 50.67% |
| Matrix_109 | GBF3 | Not Available | | 50.61% |
| Matrix_291 | EDF3 | Not Available | | 50.58% |
| Matrix_63 | ARR10 | Not Available | | 50.57% |
| Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | | 50.55% |
| Motif_683 | AtMYB2 BS in RD22 | Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression | | 50.50% |
| Matrix_14 | ZCW32; AT5G62610 | Not Available | | 50.46% |
| Matrix_169 | E2F1 | Not Available | | 50.42% |
| Matrix_288 | RAP2.3 | Not Available | | 50.40% |
| Matrix_181 | Dof5.7 | Not Available | | 50.39% |
| Motif_477 | MYB1; MYB2 | An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen | | 50.38% |
| Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 50.38% |
| Matrix_114 | EPR1; AT3G10113 | Not Available | | 50.35% |
| Matrix_512 | HAT3 | Not Available | | 50.15% |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | | 50.14% |
| Matrix_244 | DREB2C | Not Available | | 50.12% |
| Matrix_163 | AT2G20110 | Not Available | | 50.11% |
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