PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_258
Name: WOX13
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_97	APRR2	Not Available	70.09%
Matrix_210	ARR1	Not Available	68.95%
Matrix_491	AT1G68670; AT3G25790	Not Available	68.57%
Matrix_4	ARR14	Not Available	68.43%
Matrix_361	AT1G25550	Not Available	68.17%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	67.85%
Matrix_324	AT2G01060	Not Available	67.73%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	67.08%
Matrix_69	AT2G03500	Not Available	67.01%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	66.89%
Matrix_336	AT5G08520	Not Available	66.15%
Matrix_87	AT1G19000	Not Available	66.03%
Matrix_16	AT3G04450; PHL1	Not Available	65.63%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	65.63%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	64.97%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	64.60%
Matrix_157	LHY; RVE2	Not Available	64.10%
Matrix_162	AtPHR1	Not Available	63.87%
Matrix_500	WRKY43	Not Available	63.22%
Matrix_114	EPR1; AT3G10113	Not Available	63.10%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	63.10%
Matrix_182	ATHB6	Not Available	63.07%
Matrix_93	YAB5	Not Available	62.36%
Matrix_249	WRKY11	Not Available	62.32%
Matrix_204	WOX13	Not Available	62.04%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	61.76%
Matrix_308	INO	Not Available	61.49%
Matrix_423	AT3G04030	Not Available	61.44%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	60.87%
Matrix_80	BIM1	Not Available	60.52%
Matrix_227	AT1G64620	Not Available	60.51%
Matrix_238	WRKY59; WRKY23; WRKY68	Not Available	60.46%
Motif_461	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	60.33%
Matrix_387	ORA47	Not Available	60.15%
Matrix_81	YAB1	Not Available	60.09%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	59.95%
Matrix_139	OBF5	Not Available	59.92%
Matrix_6	AT1G70000	Not Available	59.83%
Matrix_237	MYB55	Not Available	59.65%
Matrix_72	CDF2	Not Available	59.63%
Matrix_279	HRS1	Not Available	59.56%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	59.50%
Matrix_271	AT3G16350	Not Available	59.33%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	59.21%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	59.16%
Matrix_9	AT5G04760	Not Available	59.09%
Matrix_421	GLK1	Not Available	59.03%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	59.03%
Matrix_479	TOE1	Not Available	59.01%
Matrix_109	GBF3	Not Available	58.99%
Motif_363	WRKY26	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	58.96%
Matrix_393	REM1	Not Available	58.95%
Motif_116	INRNTPSADB	Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box	58.87%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	58.87%
Matrix_430	TOE2	Not Available	58.80%
Matrix_495	HD-GL2-1; ANL2	Not Available	58.65%
Matrix_335	HSFB2A	Not Available	58.49%
Matrix_340	HSFC1	Not Available	58.11%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	58.08%
Matrix_106	AT5G47390	Not Available	58.04%
Matrix_99	DOF4.7	Not Available	58.02%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	57.77%
Matrix_152	EIL1; AT5G65100	Not Available	57.77%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	57.67%
Matrix_8	KAN1	Not Available	57.64%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	57.45%
Matrix_311	TGA1	Not Available	57.14%
Matrix_439	AP3	Not Available	57.13%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	57.10%
Matrix_135	ABI3	Not Available	57.02%
Matrix_447	RVE1	Not Available	56.98%
Matrix_456	bZIP60	Not Available	56.88%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.87%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	56.80%
Matrix_241	HB-1; AT5G44180	Not Available	56.77%
Matrix_471	KAN4	Not Available	56.72%
Matrix_286	GATA7	Not Available	56.72%
Matrix_142	ZFP8	Not Available	56.62%
Matrix_26	ATMYB3; MYB24	Not Available	56.61%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	56.58%
Matrix_67	GLK1	Not Available	56.56%
Matrix_173	ZAP1	Not Available	56.41%
Matrix_418	KNAT6; KNAT2	Not Available	56.38%
Matrix_167	ZAT6	Not Available	56.31%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.14%
Matrix_62	HAT5	Not Available	56.14%
Matrix_226	GATA1	Not Available	56.11%
Matrix_74	LFY	Not Available	55.95%
Matrix_331	GBF1	Not Available	55.94%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.94%
Matrix_128	TGA2	Not Available	55.84%
Matrix_59	AT4G00238; AT4G00250	Not Available	55.76%
Matrix_177	ADOF2	Not Available	55.75%
Matrix_411	DOF5.6	Not Available	55.64%
Matrix_151	ASIL1	Not Available	55.63%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	55.56%
Matrix_195	GATA2; GATA4	Not Available	55.52%
Matrix_412	GL1	Not Available	55.48%
Matrix_253	ETT	Not Available	55.36%
Matrix_461	ATHB12	Not Available	55.29%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	55.29%
Matrix_355	ERF10; ERF11	Not Available	55.29%
Matrix_50	ATERF14; AT5G43410	Not Available	55.26%
Motif_301	SPHZMC1	Sph element found in the maize C1 gene promoter; Located between -142 and -132; Essential for VP1 activation; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	55.22%
Matrix_112	TBP2; TFIID-1	Not Available	55.20%
Matrix_354	AHL12	Not Available	55.13%
Matrix_160	RVE1	Not Available	55.12%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	55.09%
Matrix_38	SPL14	Not Available	55.02%
Matrix_501	DAG2	Not Available	54.97%
Matrix_78	AT3G45610	Not Available	54.96%
Matrix_163	AT2G20110	Not Available	54.92%
Matrix_489	RAV1	Not Available	54.91%
Matrix_248	ZFP5	Not Available	54.90%
Matrix_46	AT4G21895	Not Available	54.85%
Matrix_296	GBF2	Not Available	54.82%
Matrix_380	ATMYR1	Not Available	54.76%
Matrix_254	MYB52	Not Available	54.67%
Matrix_328	AT1G76580	Not Available	54.65%
Matrix_322	NST3; ANAC015; BRN2	Not Available	54.62%
Matrix_188	SPL4	Not Available	54.50%
Matrix_228	TGA2	Not Available	54.43%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.41%
Matrix_277	RAP2.6	Not Available	54.41%
Matrix_518	AT2G21230	Not Available	54.38%
Matrix_255	cdf3	Not Available	54.31%
Matrix_282	bZIP60	Not Available	54.29%
Matrix_432	AT1G77920	Not Available	54.27%
Matrix_408	GATA12	Not Available	54.23%
Matrix_262	ATGRP2B; CSDP2	Not Available	54.20%
Matrix_383	CCA1	Not Available	54.20%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	54.08%
Matrix_420	ANAC58	Not Available	54.02%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	54.01%
Matrix_435	ATHB51	Not Available	53.95%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	53.91%
Matrix_181	Dof5.7	Not Available	53.67%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	53.61%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.54%
Matrix_374	AT5G07580; AT5G61590	Not Available	53.54%
Matrix_125	AHL12	Not Available	53.51%
Matrix_300	bZIP68; bZIP16	Not Available	53.46%
Matrix_502	AT3G13040	Not Available	53.39%
Motif_122	TGTCACACMCUCUMISIN	TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene	53.28%
Matrix_424	MYB59	Not Available	53.21%
Matrix_433	ATERF1	Not Available	53.20%
Matrix_425	TIFY2A	Not Available	53.16%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	53.16%
Matrix_63	ARR10	Not Available	53.08%
Matrix_197	NAP	Not Available	53.05%
Matrix_494	OBP4	Not Available	52.98%
Matrix_444	AT1G19485; AT4G17950	Not Available	52.97%
Matrix_96	TMO6	Not Available	52.89%
Matrix_206	CUC1; ANAC100	Not Available	52.86%
Matrix_512	HAT3	Not Available	52.83%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	52.82%
Matrix_394	DREB_U	Not Available	52.79%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	52.74%
Matrix_230	ARR11	Not Available	52.74%
Matrix_288	RAP2.3	Not Available	52.72%
Matrix_463	HAT3.1	Not Available	52.71%
Matrix_71	ATHB7	Not Available	52.65%
Matrix_487	AT1G29160	Not Available	52.62%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	52.57%
Matrix_212	ATHB-12	Not Available	52.49%
Matrix_497	AP3	Not Available	52.47%
Matrix_218	TIFY2B; TIFY1	Not Available	52.40%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	52.37%
Matrix_37	GATA27	Not Available	52.37%
Matrix_166	TGA4	Not Available	52.37%
Matrix_442	AT5G62260	Not Available	52.34%
Matrix_171	LBD3; LBD4	Not Available	52.28%
Matrix_302	HAT1; HAT2	Not Available	52.23%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	52.17%
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	52.07%
Matrix_261	ATERF-1	Not Available	51.92%
Matrix_61	ATCBF3	Not Available	51.89%
Matrix_521	AHL20	Not Available	51.87%
Matrix_292	FTQ4	Not Available	51.86%
Motif_445	PDF2; ATML1	Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	51.85%
Matrix_236	CCA1	Not Available	51.82%
Matrix_385	DEAR4	Not Available	51.81%
Matrix_347	WOX14; WOX10	Not Available	51.75%
Matrix_273	ANAC55	Not Available	51.70%
Matrix_341	HMGA	Not Available	51.68%
Matrix_505	GATA8	Not Available	51.65%
Matrix_307	RGL2; RGL3	Not Available	51.60%
Motif_121	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense;Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.60%
Matrix_116	ANAC55	Not Available	51.57%
Matrix_76	GATA10	Not Available	51.53%
Matrix_321	HRD	Not Available	51.48%
Matrix_434	ARR11	Not Available	51.48%
Matrix_225	MYB52	Not Available	51.43%
Motif_606	NAPINMOTIFBN	Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds	51.43%
Matrix_12	EIN3; EIL2	Not Available	51.40%
Motif_307	TATCCAYMOTIFOSRAMY3D	TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression	51.37%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	51.35%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	51.32%
Matrix_221	SPL7	Not Available	51.31%
Matrix_176	MYB98	Not Available	51.30%
Matrix_415	WRKY27	Not Available	51.22%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.17%
Matrix_100	AT1G48610	Not Available	51.15%
Motif_404	AACACOREOSGLUB1	Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter	51.12%
Matrix_392	ARR2	Not Available	51.10%
Matrix_472	ZN_C2_H2	Not Available	51.09%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	51.03%
Matrix_122	ABF1; AREB2	Not Available	51.02%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	51.02%
Matrix_88	AHL12	Not Available	50.94%
Matrix_92	AT1G33760	Not Available	50.92%
Motif_246	LBOXLERBCS	L box; Conserved sequence found in rbcS upstream sequences of both tomato and tobacco	50.91%
Matrix_291	EDF3	Not Available	50.86%
Matrix_409	DEAR3	Not Available	50.85%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.77%
Matrix_318	ATHB16	Not Available	50.75%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	50.73%
Matrix_478	AT1G01250	Not Available	50.64%
Matrix_474	ANAC014; ANAC062; NTL9; TIP	Not Available	50.64%
Matrix_23	ANAC46	Not Available	50.62%
Matrix_159	TEM2	Not Available	50.62%
Matrix_79	FUS3	Not Available	50.60%
Matrix_522	GATA11; GATA13	Not Available	50.56%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.55%
Matrix_319	TEM1	Not Available	50.51%
Motif_370	TATABOX2	TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.50%
Matrix_513	SOL1; TSO1; TCX2	Not Available	50.44%
Matrix_244	DREB2C	Not Available	50.43%
Motif_70	CANBNNAPA	Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor	50.42%
Motif_150	RBCSCONSENSUS	rbcS general consensus sequence; AATCCAA or AATCCAAC	50.38%
Matrix_449	BIM2	Not Available	50.33%
Matrix_84	AtGRF6	Not Available	50.27%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	50.25%
Matrix_120	BEE2	Not Available	50.19%
Motif_193	GLK1	GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis	50.18%
Matrix_91	CRF3	Not Available	50.15%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.05%
Matrix_196	TCP20; AT5G41030	Not Available	50.04%