PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_255
Name: cdf3
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_72	CDF2	Not Available	84.18%
Matrix_501	DAG2	Not Available	78.19%
Matrix_227	AT1G64620	Not Available	74.38%
Matrix_181	Dof5.7	Not Available	72.72%
Matrix_411	DOF5.6	Not Available	66.76%
Matrix_519	ATDOF2.4	Not Available	66.28%
Matrix_177	ADOF2	Not Available	66.15%
Matrix_46	AT4G21895	Not Available	65.56%
Matrix_296	GBF2	Not Available	64.62%
Matrix_78	AT3G45610	Not Available	64.24%
Matrix_182	ATHB6	Not Available	64.22%
Matrix_99	DOF4.7	Not Available	64.21%
Matrix_14	ZCW32; AT5G62610	Not Available	63.66%
Matrix_300	bZIP68; bZIP16	Not Available	63.55%
Matrix_157	LHY; RVE2	Not Available	62.10%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	62.05%
Matrix_505	GATA8	Not Available	61.88%
Matrix_487	AT1G29160	Not Available	61.36%
Matrix_188	SPL4	Not Available	61.02%
Matrix_37	GATA27	Not Available	60.96%
Matrix_152	EIL1; AT5G65100	Not Available	60.87%
Matrix_25	AP3	Not Available	60.38%
Matrix_80	BIM1	Not Available	60.14%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	59.84%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	58.94%
Matrix_475	AT5G64220	Not Available	58.27%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	58.22%
Matrix_114	EPR1; AT3G10113	Not Available	58.00%
Matrix_286	GATA7	Not Available	58.00%
Matrix_374	AT5G07580; AT5G61590	Not Available	57.97%
Matrix_241	HB-1; AT5G44180	Not Available	57.86%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	57.86%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	57.84%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	57.30%
Matrix_307	RGL2; RGL3	Not Available	57.20%
Matrix_226	GATA1	Not Available	57.17%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	57.10%
Matrix_221	SPL7	Not Available	57.06%
Matrix_96	TMO6	Not Available	56.97%
Matrix_100	AT1G48610	Not Available	56.93%
Matrix_259	AT1G50680; AT1G51120	Not Available	56.89%
Matrix_141	AT3G25990	Not Available	56.89%
Matrix_129	ABF1	Not Available	56.79%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	56.74%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	56.68%
Matrix_435	ATHB51	Not Available	56.62%
Matrix_93	YAB5	Not Available	56.50%
Matrix_233	MYC3	Not Available	56.49%
Motif_34	LECPLEACS2	Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene	56.48%
Matrix_109	GBF3	Not Available	56.27%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	56.06%
Matrix_60	AT1G01260; AT5G57150	Not Available	56.00%
Matrix_248	ZFP5	Not Available	55.98%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	55.89%
Matrix_336	AT5G08520	Not Available	55.86%
Matrix_420	ANAC58	Not Available	55.79%
Motif_423	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	55.70%
Matrix_408	GATA12	Not Available	55.68%
Matrix_79	FUS3	Not Available	55.55%
Matrix_126	RBE	Not Available	55.48%
Matrix_320	MYC4	Not Available	55.45%
Matrix_120	BEE2	Not Available	55.41%
Matrix_85	SPL5	Not Available	55.39%
Matrix_35	YAB5; YAB3	Not Available	55.31%
Matrix_512	HAT3	Not Available	55.26%
Matrix_493	AT1G22985; AT1G71130	Not Available	55.25%
Matrix_327	ARR11	Not Available	55.13%
Matrix_383	CCA1	Not Available	55.13%
Matrix_27	ATAIB; ATNIG1	Not Available	55.09%
Matrix_137	SPL1; SPL12	Not Available	55.09%
Matrix_195	GATA2; GATA4	Not Available	55.07%
Matrix_67	GLK1	Not Available	54.97%
Matrix_160	RVE1	Not Available	54.96%
Matrix_476	bHLH115; bHLH34	Not Available	54.90%
Matrix_333	GATA3	Not Available	54.88%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	54.87%
Matrix_171	LBD3; LBD4	Not Available	54.80%
Matrix_142	ZFP8	Not Available	54.80%
Matrix_389	ILR3	Not Available	54.72%
Matrix_167	ZAT6	Not Available	54.59%
Matrix_198	STZ; C2H2; AZF3	Not Available	54.54%
Matrix_26	ATMYB3; MYB24	Not Available	54.54%
Matrix_437	MYC2	Not Available	54.52%
Matrix_204	WOX13	Not Available	54.48%
Matrix_434	ARR11	Not Available	54.47%
Matrix_135	ABI3	Not Available	54.31%
Matrix_463	HAT3.1	Not Available	54.25%
Matrix_425	TIFY2A	Not Available	54.23%
Matrix_416	ASL5	Not Available	54.22%
Matrix_84	AtGRF6	Not Available	54.22%
Matrix_254	MYB52	Not Available	54.21%
Matrix_116	ANAC55	Not Available	54.18%
Matrix_150	UNE10; PIF7	Not Available	54.14%
Matrix_323	BIM3	Not Available	54.08%
Matrix_143	GATA14; GATA6; GATA5	Not Available	54.08%
Matrix_465	MYC4	Not Available	54.08%
Matrix_398	TBP2; ATTRB2	Not Available	54.02%
Matrix_20	ANAC030; NST1; NAC066	Not Available	53.97%
Matrix_503	AT2G37430; AT3G53600	Not Available	53.92%
Motif_218	ABRERATCAL	ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE	53.91%
Matrix_206	CUC1; ANAC100	Not Available	53.82%
Matrix_212	ATHB-12	Not Available	53.81%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.77%
Matrix_331	GBF1	Not Available	53.75%
Matrix_151	ASIL1	Not Available	53.73%
Matrix_321	HRD	Not Available	53.73%
Matrix_447	RVE1	Not Available	53.70%
Matrix_308	INO	Not Available	53.67%
Matrix_330	MYC2; TT8	Not Available	53.54%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	53.48%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	53.46%
Matrix_236	CCA1	Not Available	53.38%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	53.34%
Matrix_423	AT3G04030	Not Available	53.34%
Matrix_274	EDF3	Not Available	53.33%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	53.30%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	53.27%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	53.24%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	53.23%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	53.12%
Matrix_444	AT1G19485; AT4G17950	Not Available	53.09%
Matrix_449	BIM2	Not Available	53.01%
Matrix_261	ATERF-1	Not Available	53.00%
Matrix_239	AT5G04390	Not Available	52.96%
Matrix_88	AHL12	Not Available	52.96%
Matrix_491	AT1G68670; AT3G25790	Not Available	52.94%
Matrix_436	AT3G49930; AZF1	Not Available	52.90%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	52.90%
Matrix_418	KNAT6; KNAT2	Not Available	52.79%
Matrix_502	AT3G13040	Not Available	52.73%
Matrix_70	GATA26	Not Available	52.71%
Matrix_91	CRF3	Not Available	52.69%
Matrix_354	AHL12	Not Available	52.61%
Matrix_341	HMGA	Not Available	52.60%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.59%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	52.57%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	52.51%
Matrix_379	RHL41	Not Available	52.36%
Motif_445	PDF2; ATML1	Regulation of shoot epidermal cell differentiation by a pair of homeodomain proteins in Arabidopsis. Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	52.36%
Matrix_404	OBP4	Not Available	52.33%
Matrix_62	HAT5	Not Available	52.30%
Matrix_97	APRR2	Not Available	52.27%
Matrix_262	ATGRP2B; CSDP2	Not Available	52.23%
Matrix_424	MYB59	Not Available	52.13%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.09%
Matrix_442	AT5G62260	Not Available	52.07%
Matrix_322	NST3; ANAC015; BRN2	Not Available	51.94%
Matrix_328	AT1G76580	Not Available	51.89%
Matrix_23	ANAC46	Not Available	51.87%
Matrix_273	ANAC55	Not Available	51.83%
Matrix_145	GBF4; AT5G44080	Not Available	51.77%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.73%
Matrix_249	WRKY11	Not Available	51.51%
Matrix_69	AT2G03500	Not Available	51.47%
Matrix_41	anac058	Not Available	51.25%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	51.19%
Matrix_218	TIFY2B; TIFY1	Not Available	51.15%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	51.15%
Matrix_302	HAT1; HAT2	Not Available	51.14%
Matrix_12	EIN3; EIL2	Not Available	51.09%
Matrix_38	SPL14	Not Available	51.05%
Matrix_518	AT2G21230	Not Available	51.05%
Matrix_412	GL1	Not Available	51.01%
Matrix_81	YAB1	Not Available	50.99%
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	50.95%
Matrix_156	POC1	Not Available	50.93%
Matrix_230	ARR11	Not Available	50.92%
Matrix_8	KAN1	Not Available	50.87%
Matrix_429	KAN4	Not Available	50.84%
Matrix_350	ARR14	Not Available	50.78%
Matrix_65	POC1; PIL1	Not Available	50.76%
Matrix_494	OBP4	Not Available	50.69%
Matrix_122	ABF1; AREB2	Not Available	50.68%
Matrix_112	TBP2; TFIID-1	Not Available	50.67%
Matrix_361	AT1G25550	Not Available	50.56%
Matrix_347	WOX14; WOX10	Not Available	50.45%
Matrix_461	ATHB12	Not Available	50.41%
Matrix_346	AtMYB70; MYB73	Not Available	50.41%
Matrix_162	AtPHR1	Not Available	50.40%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	50.33%
Motif_155	NODCON1GM	One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules	50.31%
Matrix_313	ATMYB65; MYB33	Not Available	50.28%
Matrix_136	SEP3	Not Available	50.23%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	50.18%
Motif_349	QARBNEXTA	QAR (quantitative activator region) in promoter region of Brassica napus extA extensin gene	50.18%
Matrix_332	SPT; ALC	Not Available	50.09%
Matrix_271	AT3G16350	Not Available	50.09%