PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_236
Name: CCA1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_520	ARR14	Not Available	77.37%
Matrix_143	GATA14; GATA6; GATA5	Not Available	74.33%
Matrix_505	GATA8	Not Available	72.14%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	71.69%
Matrix_333	GATA3	Not Available	70.42%
Matrix_70	GATA26	Not Available	69.42%
Matrix_37	GATA27	Not Available	69.25%
Matrix_203	GATA9; GATA12	Not Available	68.90%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	68.40%
Matrix_421	GLK1	Not Available	68.39%
Matrix_160	RVE1	Not Available	67.60%
Matrix_444	AT1G19485; AT4G17950	Not Available	67.23%
Matrix_383	CCA1	Not Available	67.01%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	66.27%
Matrix_328	AT1G76580	Not Available	66.16%
Matrix_327	ARR11	Not Available	65.95%
Matrix_8	KAN1	Not Available	65.56%
Matrix_85	SPL5	Not Available	64.86%
Matrix_157	LHY; RVE2	Not Available	64.44%
Matrix_415	WRKY27	Not Available	63.94%
Matrix_152	EIL1; AT5G65100	Not Available	63.54%
Matrix_218	TIFY2B; TIFY1	Not Available	62.84%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	62.57%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	62.53%
Matrix_97	APRR2	Not Available	62.44%
Matrix_17	WRKY22	Not Available	62.38%
Matrix_512	HAT3	Not Available	62.25%
Matrix_197	NAP	Not Available	61.88%
Matrix_137	SPL1; SPL12	Not Available	61.82%
Matrix_75	WRKY29	Not Available	61.82%
Matrix_125	AHL12	Not Available	61.54%
Matrix_259	AT1G50680; AT1G51120	Not Available	61.50%
Matrix_500	WRKY43	Not Available	61.25%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	61.13%
Matrix_195	GATA2; GATA4	Not Available	60.86%
Matrix_114	EPR1; AT3G10113	Not Available	60.76%
Matrix_391	AHL20	Not Available	60.71%
Matrix_434	ARR11	Not Available	60.70%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	60.54%
Matrix_87	AT1G19000	Not Available	60.43%
Matrix_408	GATA12	Not Available	60.38%
Matrix_227	AT1G64620	Not Available	60.32%
Matrix_491	AT1G68670; AT3G25790	Not Available	60.21%
Matrix_502	AT3G13040	Not Available	59.94%
Matrix_67	GLK1	Not Available	59.91%
Matrix_141	AT3G25990	Not Available	59.86%
Matrix_72	CDF2	Not Available	59.71%
Matrix_3	WRKY48	Not Available	59.69%
Matrix_162	AtPHR1	Not Available	59.67%
Matrix_504	WRKY40	Not Available	59.50%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	59.43%
Matrix_69	AT2G03500	Not Available	59.41%
Matrix_425	TIFY2A	Not Available	59.30%
Matrix_249	WRKY11	Not Available	59.25%
Matrix_522	GATA11; GATA13	Not Available	59.23%
Matrix_181	Dof5.7	Not Available	59.20%
Matrix_384	ATWRKY17	Not Available	59.15%
Matrix_81	YAB1	Not Available	58.96%
Matrix_416	ASL5	Not Available	58.91%
Matrix_453	EIL3	Not Available	58.86%
Matrix_46	AT4G21895	Not Available	58.82%
Matrix_226	GATA1	Not Available	58.65%
Matrix_120	BEE2	Not Available	58.65%
Matrix_370	WRKY50; WRKY51	Not Available	58.64%
Matrix_53	MYC3	Not Available	58.61%
Matrix_129	ABF1	Not Available	58.59%
Matrix_182	ATHB6	Not Available	58.53%
Matrix_76	GATA10	Not Available	58.49%
Matrix_93	YAB5	Not Available	58.34%
Matrix_88	AHL12	Not Available	58.26%
Matrix_412	GL1	Not Available	58.15%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	58.10%
Matrix_255	cdf3	Not Available	58.04%
Matrix_16	AT3G04450; PHL1	Not Available	58.00%
Matrix_32	AHL25	Not Available	57.72%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	57.71%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	57.65%
Matrix_336	AT5G08520	Not Available	57.58%
Matrix_38	SPL14	Not Available	57.48%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	57.46%
Matrix_465	MYC4	Not Available	57.42%
Matrix_9	AT5G04760	Not Available	57.36%
Matrix_322	NST3; ANAC015; BRN2	Not Available	57.27%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	57.23%
Matrix_347	WOX14; WOX10	Not Available	57.21%
Matrix_429	KAN4	Not Available	57.20%
Matrix_210	ARR1	Not Available	57.19%
Matrix_308	INO	Not Available	57.18%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	57.06%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	57.00%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	56.85%
Matrix_4	ARR14	Not Available	56.75%
Motif_556	INTRONUPPER	5' exon-intron splice junctions of plant introns; Plant intron upper sequence; Consensus sequence for plant introns	56.68%
Matrix_330	MYC2; TT8	Not Available	56.54%
Matrix_494	OBP4	Not Available	56.44%
Matrix_116	ANAC55	Not Available	56.34%
Matrix_204	WOX13	Not Available	56.33%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	56.30%
Matrix_442	AT5G62260	Not Available	56.21%
Matrix_324	AT2G01060	Not Available	56.16%
Matrix_366	ARR14	Not Available	56.10%
Matrix_302	HAT1; HAT2	Not Available	56.08%
Matrix_447	RVE1	Not Available	56.04%
Matrix_435	ATHB51	Not Available	55.99%
Matrix_361	AT1G25550	Not Available	55.95%
Matrix_389	ILR3	Not Available	55.92%
Matrix_212	ATHB-12	Not Available	55.83%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	55.80%
Matrix_286	GATA7	Not Available	55.77%
Matrix_501	DAG2	Not Available	55.73%
Matrix_185	AHL25	Not Available	55.65%
Matrix_472	ZN_C2_H2	Not Available	55.63%
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.59%
Matrix_423	AT3G04030	Not Available	55.54%
Matrix_303	ATWOX13	Not Available	55.34%
Matrix_355	ERF10; ERF11	Not Available	55.27%
Matrix_323	BIM3	Not Available	55.22%
Matrix_449	BIM2	Not Available	55.11%
Matrix_99	DOF4.7	Not Available	54.92%
Matrix_279	HRS1	Not Available	54.85%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	54.84%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	54.84%
Matrix_411	DOF5.6	Not Available	54.79%
Motif_297	Bellringer/replumless/pennywise BS1 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	54.74%
Matrix_354	AHL12	Not Available	54.69%
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	54.61%
Matrix_54	AHL20	Not Available	54.61%
Matrix_296	GBF2	Not Available	54.37%
Matrix_102	WRKY21	Not Available	54.37%
Matrix_450	SPL7	Not Available	54.33%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	54.32%
Motif_181	IBOXCORENT	I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions	54.29%
Matrix_237	MYB55	Not Available	54.28%
Matrix_177	ADOF2	Not Available	54.18%
Matrix_142	ZFP8	Not Available	54.18%
Matrix_282	bZIP60	Not Available	54.17%
Matrix_420	ANAC58	Not Available	54.13%
Matrix_175	Dof5.7	Not Available	54.13%
Matrix_273	ANAC55	Not Available	54.08%
Motif_523	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	54.08%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.02%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	53.99%
Matrix_441	ATHB5	Not Available	53.94%
Matrix_461	ATHB12	Not Available	53.84%
Matrix_171	LBD3; LBD4	Not Available	53.83%
Matrix_350	ARR14	Not Available	53.81%
Motif_93	RGATAOS	R-GATA (GATA motif binding factor) binding site; GATA motif is found at -143 to -135 of RTBV promoter; GATA motif is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); See also RNFG1OS, RNFG2OS, and ABFOS	53.72%
Matrix_151	ASIL1	Not Available	53.65%
Matrix_221	SPL7	Not Available	53.62%
Matrix_489	RAV1	Not Available	53.57%
Matrix_307	RGL2; RGL3	Not Available	53.57%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	53.43%
Motif_293	NONAMERATH4	Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene	53.42%
Matrix_254	MYB52	Not Available	53.41%
Matrix_337	MYB46	Not Available	53.40%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	53.32%
Matrix_230	ARR11	Not Available	53.32%
Matrix_341	HMGA	Not Available	53.29%
Matrix_220	WRKY18	Not Available	53.29%
Matrix_393	REM1	Not Available	53.26%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	53.22%
Matrix_71	ATHB7	Not Available	53.22%
Matrix_431	ATHB21; HB-3	Not Available	53.19%
Matrix_241	HB-1; AT5G44180	Not Available	53.16%
Matrix_228	TGA2	Not Available	53.04%
Matrix_262	ATGRP2B; CSDP2	Not Available	53.02%
Matrix_165	KNAT1	Not Available	53.01%
Matrix_382	AT3G04850	Not Available	52.99%
Matrix_243	RAP2.12; RAP2.2	Not Available	52.97%
Matrix_174	ZAT2	Not Available	52.94%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	52.93%
Motif_580	L1BOXATPDF1	L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein	52.89%
Matrix_300	bZIP68; bZIP16	Not Available	52.88%
Matrix_188	SPL4	Not Available	52.85%
Matrix_78	AT3G45610	Not Available	52.84%
Matrix_463	HAT3.1	Not Available	52.81%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	52.66%
Matrix_136	SEP3	Not Available	52.66%
Matrix_62	HAT5	Not Available	52.61%
Motif_673	Bellringer/replumless/pennywise BS2 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	52.57%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	52.56%
Matrix_51	LFY	Not Available	52.49%
Matrix_168	AHL25	Not Available	52.38%
Motif_138	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	52.37%
Matrix_521	AHL20	Not Available	52.21%
Matrix_208	AP1	Not Available	52.13%
Matrix_12	EIN3; EIL2	Not Available	52.10%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.09%
Matrix_519	ATDOF2.4	Not Available	52.05%
Matrix_23	ANAC46	Not Available	51.96%
Matrix_258	WOX13	Not Available	51.82%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	51.78%
Matrix_148	WRKY60	Not Available	51.51%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.48%
Matrix_84	AtGRF6	Not Available	51.39%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	51.37%
Matrix_277	RAP2.6	Not Available	51.36%
Matrix_180	SPL1	Not Available	51.34%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	51.33%
Motif_248	L1-box	Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element	51.30%
Matrix_523	FUSCA3	Not Available	51.24%
Matrix_332	SPT; ALC	Not Available	51.19%
Matrix_427	ZAT14	Not Available	51.09%
Matrix_260	CAMTA3	Not Available	51.08%
Matrix_493	AT1G22985; AT1G71130	Not Available	51.03%
Matrix_470	WRKY18	Not Available	51.01%
Matrix_40	TCP2	Not Available	50.97%
Motif_341	NAM	Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily	50.95%
Matrix_52	ZAT18	Not Available	50.94%
Matrix_274	EDF3	Not Available	50.92%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	50.92%
Matrix_135	ABI3	Not Available	50.82%
Motif_19	AAGACGTAGATACL12	Sequence found in Arabidopsis acyl carrier protein (ACP), Acl1.2, gene promoter; Contains bZIP core motif (ACGT)	50.80%
Matrix_169	E2F1	Not Available	50.75%
Matrix_20	ANAC030; NST1; NAC066	Not Available	50.73%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	50.73%
Matrix_205	AGL15	Not Available	50.71%
Matrix_50	ATERF14; AT5G43410	Not Available	50.68%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	50.57%
Matrix_418	KNAT6; KNAT2	Not Available	50.54%
Matrix_201	AT1G74840	Not Available	50.48%
Matrix_374	AT5G07580; AT5G61590	Not Available	50.45%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.23%
Matrix_91	CRF3	Not Available	50.23%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	50.22%
Matrix_315	MYB111	Not Available	50.21%
Matrix_397	GT2L	Not Available	50.18%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	50.09%
Motif_166	RAP2.2	Transcription factor RAP2.2 and its interacting partner SINAT2: stable elements in the carotenogenesis of Arabidopsis leaves	50.07%
Matrix_299	PFG3	Not Available	50.05%
Matrix_167	ZAT6	Not Available	50.04%
Matrix_25	AP3	Not Available	50.03%
Matrix_285	DDF1	Not Available	50.00%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.00%