| Matrix_289 | WRKY25 | Not Available | | 94.26% |
| Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 92.75% |
| Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 91.61% |
| Matrix_245 | WRKY62; WRKY38 | Not Available | | 89.74% |
| Matrix_504 | WRKY40 | Not Available | | 82.91% |
| Matrix_390 | GT-1 | Not Available | | 78.71% |
| Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 72.63% |
| Matrix_470 | WRKY18 | Not Available | | 70.94% |
| Matrix_197 | NAP | Not Available | | 70.75% |
| Matrix_220 | WRKY18 | Not Available | | 68.91% |
| Matrix_415 | WRKY27 | Not Available | | 65.08% |
| Matrix_238 | WRKY59; WRKY23; WRKY68 | Not Available | | 64.85% |
| Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | | 64.72% |
| Motif_161 | SPL7; SPL4 | A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 64.09% |
| Matrix_281 | TCP13 | Not Available | | 63.52% |
| Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 62.37% |
| Matrix_294 | MEE35 | Not Available | | 62.06% |
| Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | | 61.70% |
| Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 61.58% |
| Matrix_102 | WRKY21 | Not Available | | 61.00% |
| Matrix_94 | TCP5 | Not Available | | 60.88% |
| Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | | 60.55% |
| Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 60.33% |
| Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 60.32% |
| Motif_1 | GT1CORE | Critical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex | | 60.29% |
| Matrix_170 | AT5G47660 | Not Available | | 60.21% |
| Motif_674 | SPL4; SPL1; SPL5 | Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors | | 59.89% |
| Motif_123 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 59.47% |
| Motif_26 | GRF7 | Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A | | 59.33% |
| Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 59.29% |
| Matrix_82 | TCP17 | Not Available | | 59.25% |
| Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | | 58.99% |
| Matrix_139 | OBF5 | Not Available | | 58.66% |
| Matrix_148 | WRKY60 | Not Available | | 58.50% |
| Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 58.42% |
| Matrix_500 | WRKY43 | Not Available | | 57.77% |
| Matrix_165 | KNAT1 | Not Available | | 57.61% |
| Motif_435 | E2FBNTRNR | E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation | | 57.56% |
| Motif_525 | CRTDREHVCBF2 | Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature | | 57.22% |
| Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 57.07% |
| Matrix_334 | AT3G23230 | Not Available | | 56.79% |
| Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 56.76% |
| Matrix_370 | WRKY50; WRKY51 | Not Available | | 56.57% |
| Matrix_3 | WRKY48 | Not Available | | 56.28% |
| Matrix_384 | ATWRKY17 | Not Available | | 56.20% |
| Motif_491 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 56.11% |
| Matrix_249 | WRKY11 | Not Available | | 55.93% |
| Motif_222 | AGMOTIFNTMYB2 | AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site | | 55.27% |
| Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | | 55.05% |
| Motif_287 | BIHD1OS | Binding site of OsBIHD1, a rice BELL homeodomain transcription factor | | 55.04% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 54.75% |
| Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 54.74% |
| Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 54.63% |
| Matrix_505 | GATA8 | Not Available | | 54.30% |
| Matrix_163 | AT2G20110 | Not Available | | 54.13% |
| Matrix_218 | TIFY2B; TIFY1 | Not Available | | 53.80% |
| Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | | 53.50% |
| Motif_199 | GCN4OSGLUB1 | GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression | | 53.07% |
| Matrix_253 | ETT | Not Available | | 52.89% |
| Matrix_85 | SPL5 | Not Available | | 52.76% |
| Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | | 52.75% |
| Matrix_513 | SOL1; TSO1; TCX2 | Not Available | | 52.75% |
| Motif_71 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 52.70% |
| Motif_213 | ZML2 | The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis | | 51.97% |
| Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | | 51.97% |
| Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 51.83% |
| Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | | 51.75% |
| Matrix_432 | AT1G77920 | Not Available | | 51.54% |
| Matrix_216 | TCP16 | Not Available | | 51.34% |
| Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 51.32% |
| Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 51.05% |
| Matrix_137 | SPL1; SPL12 | Not Available | | 51.02% |
| Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | | 50.88% |
| Matrix_75 | WRKY29 | Not Available | | 50.79% |
| Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | | 50.60% |
| Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | | 50.25% |
| Matrix_37 | GATA27 | Not Available | | 50.25% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 50.21% |
| Matrix_397 | GT2L | Not Available | | 50.05% |
| Matrix_166 | TGA4 | Not Available | | 50.05% |
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