PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_218
Name: TIFY2B; TIFY1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_309	GATA promoter motif	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	68.06%
Matrix_425	TIFY2A	Not Available	67.46%
Matrix_35	YAB5; YAB3	Not Available	66.59%
Matrix_512	HAT3	Not Available	64.42%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	63.23%
Matrix_505	GATA8	Not Available	62.63%
Matrix_76	GATA10	Not Available	61.77%
Matrix_37	GATA27	Not Available	60.39%
Matrix_522	GATA11; GATA13	Not Available	60.28%
Matrix_100	AT1G48610	Not Available	60.03%
Matrix_126	RBE	Not Available	59.91%
Matrix_519	ATDOF2.4	Not Available	59.63%
Motif_401	ARR1AT	ARR1-binding element found in Arabidopsis; ARR1 is a response regulator; AGATT is found in the promoter of rice non-symbiotic haemoglobin-2 (NSHB) gene	59.51%
Matrix_347	WOX14; WOX10	Not Available	58.82%
Motif_584	UPRE-III(bZIP60)	The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis	58.49%
Matrix_239	AT5G04390	Not Available	58.38%
Matrix_503	AT2G37430; AT3G53600	Not Available	57.25%
Motif_168	IBOX	I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene	56.98%
Matrix_198	STZ; C2H2; AZF3	Not Available	56.81%
Matrix_379	RHL41	Not Available	56.71%
Matrix_436	AT3G49930; AZF1	Not Available	55.70%
Matrix_303	ATWOX13	Not Available	55.66%
Matrix_112	TBP2; TFIID-1	Not Available	54.95%
Matrix_137	SPL1; SPL12	Not Available	54.93%
Motif_222	AGMOTIFNTMYB2	AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site	54.68%
Motif_242	IBOXCORE	I box; I-box; Conserved sequence upstream of light-regulated genes; Conserved sequence upstream of light-regulated genes of both monocots and dicots	54.00%
Matrix_152	EIL1; AT5G65100	Not Available	53.78%
Motif_249	DPBF1&2 binding site motif	A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system	53.25%
Matrix_135	ABI3	Not Available	53.06%
Motif_48	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.90%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	52.44%
Motif_262	WRKY70	Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana	52.30%
Motif_324	MYBST1	Core motif of MybSt1 (a potato MYB homolog) binding site; MybSt1 cDNA clone was isolated by using CaMV 35S promoter domain A as a probe; The Myb motif of the MybSt1 protein is distinct from the plant Myb DNA binding domain described so far	51.82%
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	51.71%
Matrix_78	AT3G45610	Not Available	51.70%
Matrix_165	KNAT1	Not Available	51.59%
Motif_628	TATCCAOSAMY	TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2	51.20%
Motif_688	AMMORESIVDCRNIA1	Motif (IVD) found in the Chlamydomonas Nia1 gene promoter; Located between -51 and -42; Involved in Nia1 transcription repression	51.17%
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	51.12%
Matrix_504	WRKY40	Not Available	51.06%
Matrix_260	CAMTA3	Not Available	51.03%
Motif_310	ANAERO3CONSENSUS	One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator	50.95%
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	50.86%
Matrix_79	FUS3	Not Available	50.83%
Motif_576	TGACGTVMAMY	TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds	50.55%
Motif_365	ARF1 binding site motif	ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors	50.36%
Matrix_182	ATHB6	Not Available	50.28%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	50.05%
Motif_145	MYCATERD1	MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif	50.03%