PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_209
Name: RAP2.6
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_285	DDF1	Not Available	77.10%
Matrix_418	KNAT6; KNAT2	Not Available	70.20%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	69.69%
Matrix_287	ERF2	Not Available	67.52%
Matrix_101	ERF5	Not Available	66.38%
Matrix_5	AT5G51190; ERF104	Not Available	64.53%
Matrix_433	ATERF1	Not Available	64.41%
Matrix_307	RGL2; RGL3	Not Available	63.73%
Matrix_321	HRD	Not Available	63.66%
Matrix_450	SPL7	Not Available	63.62%
Matrix_343	AT2G33710	Not Available	63.05%
Matrix_188	SPL4	Not Available	63.05%
Matrix_31	SPL1	Not Available	62.75%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	62.70%
Matrix_344	ATERF15; AT4G18450	Not Available	62.67%
Matrix_374	AT5G07580; AT5G61590	Not Available	62.66%
Motif_577	GRAZMRAB28	GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130	62.22%
Matrix_234	RAP2.3	Not Available	61.82%
Matrix_206	CUC1; ANAC100	Not Available	61.55%
Matrix_378	ATERF1	Not Available	61.50%
Matrix_489	RAV1	Not Available	61.28%
Matrix_41	anac058	Not Available	61.28%
Matrix_11	TRFL5	Not Available	60.94%
Matrix_146	ORA47	Not Available	60.84%
Matrix_227	AT1G64620	Not Available	60.76%
Matrix_416	ASL5	Not Available	60.51%
Motif_255	B2GMAUX28	B2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -310 and -301; Contains a TGACGACA sequence which is similar to TGACGT/C sequence found in Ocs, CaMV35S and histone H3 promoter; Contains as-1 motif	60.44%
Matrix_85	SPL5	Not Available	60.24%
Matrix_507	TCP3	Not Available	59.84%
Matrix_261	ATERF-1	Not Available	59.74%
Matrix_362	DEAR3	Not Available	59.62%
Matrix_272	DEAR4	Not Available	59.56%
Matrix_190	ATERF1	Not Available	59.54%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	59.50%
Matrix_254	MYB52	Not Available	59.36%
Matrix_448	ATERF6	Not Available	59.34%
Matrix_137	SPL1; SPL12	Not Available	59.32%
Matrix_80	BIM1	Not Available	58.96%
Matrix_241	HB-1; AT5G44180	Not Available	58.94%
Matrix_221	SPL7	Not Available	58.85%
Matrix_17	WRKY22	Not Available	58.84%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	58.60%
Matrix_75	WRKY29	Not Available	58.57%
Matrix_384	ATWRKY17	Not Available	58.30%
Matrix_473	RRTF1	Not Available	58.09%
Matrix_3	WRKY48	Not Available	57.82%
Matrix_469	NAC041; NAC083	Not Available	57.77%
Matrix_484	ATERF13	Not Available	57.71%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	57.41%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	57.32%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	57.26%
Matrix_493	AT1G22985; AT1G71130	Not Available	57.20%
Matrix_102	WRKY21	Not Available	57.18%
Matrix_147	ERF3; AT1G80580	Not Available	57.02%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	56.99%
Matrix_463	HAT3.1	Not Available	56.95%
Motif_429	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	56.84%
Matrix_91	CRF3	Not Available	56.83%
Matrix_45	DRN	Not Available	56.68%
Matrix_480	BES1	Not Available	56.56%
Matrix_252	RAP2.6	Not Available	56.37%
Matrix_53	MYC3	Not Available	56.36%
Motif_331	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	56.36%
Matrix_182	ATHB6	Not Available	56.27%
Matrix_72	CDF2	Not Available	56.19%
Matrix_171	LBD3; LBD4	Not Available	56.02%
Matrix_478	AT1G01250	Not Available	56.00%
Matrix_370	WRKY50; WRKY51	Not Available	55.96%
Matrix_457	TGA2	Not Available	55.93%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	55.91%
Matrix_165	KNAT1	Not Available	55.89%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	55.80%
Matrix_226	GATA1	Not Available	55.61%
Matrix_313	ATMYB65; MYB33	Not Available	55.57%
Matrix_295	ERF1	Not Available	55.49%
Matrix_286	GATA7	Not Available	55.38%
Matrix_122	ABF1; AREB2	Not Available	55.38%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	55.35%
Matrix_78	AT3G45610	Not Available	55.30%
Matrix_37	GATA27	Not Available	55.17%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	55.15%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	55.08%
Motif_638	ABRE binding site motif	Not Available	55.07%
Matrix_426	CRF1; CRF2	Not Available	55.00%
Matrix_143	GATA14; GATA6; GATA5	Not Available	54.90%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.87%
Motif_457	AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	54.87%
Matrix_243	RAP2.12; RAP2.2	Not Available	54.86%
Matrix_109	GBF3	Not Available	54.81%
Matrix_501	DAG2	Not Available	54.79%
Matrix_492	ETT	Not Available	54.64%
Matrix_398	TBP2; ATTRB2	Not Available	54.60%
Matrix_389	ILR3	Not Available	54.57%
Matrix_59	AT4G00238; AT4G00250	Not Available	54.56%
Matrix_84	AtGRF6	Not Available	54.51%
Matrix_228	TGA2	Not Available	54.49%
Matrix_506	DRNL; ATERF-4	Not Available	54.48%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	54.43%
Matrix_323	BIM3	Not Available	54.40%
Matrix_253	ETT	Not Available	54.35%
Matrix_282	bZIP60	Not Available	54.32%
Matrix_331	GBF1	Not Available	54.26%
Matrix_330	MYC2; TT8	Not Available	54.25%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	54.25%
Matrix_405	DREB2C	Not Available	54.24%
Matrix_177	ADOF2	Not Available	54.22%
Matrix_180	SPL1	Not Available	54.21%
Motif_495	TRANSINITMONOCOTS	Context sequence of translational initiation codon in monocots	54.21%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	54.14%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	54.14%
Matrix_99	DOF4.7	Not Available	53.97%
Matrix_334	AT3G23230	Not Available	53.91%
Matrix_181	Dof5.7	Not Available	53.91%
Motif_188	CDA1ATCAB2	CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis	53.90%
Matrix_404	OBP4	Not Available	53.84%
Matrix_333	GATA3	Not Available	53.84%
Matrix_449	BIM2	Not Available	53.77%
Matrix_424	MYB59	Not Available	53.76%
Matrix_465	MYC4	Not Available	53.73%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	53.65%
Matrix_33	SPL11; SPL10; SPL2	Not Available	53.55%
Motif_183	TRANSINITDICOTS	Context sequence of translational initiation codon in dicots	53.50%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	53.45%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	53.40%
Matrix_50	ATERF14; AT5G43410	Not Available	53.40%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	53.33%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	53.31%
Matrix_328	AT1G76580	Not Available	53.23%
Matrix_494	OBP4	Not Available	53.17%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	53.16%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	53.12%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	53.07%
Matrix_120	BEE2	Not Available	52.93%
Matrix_274	EDF3	Not Available	52.83%
Matrix_129	ABF1	Not Available	52.80%
Matrix_415	WRKY27	Not Available	52.74%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	52.70%
Matrix_195	GATA2; GATA4	Not Available	52.70%
Matrix_360	ORA59	Not Available	52.67%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	52.47%
Matrix_14	ZCW32; AT5G62610	Not Available	52.44%
Motif_583	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	52.38%
Matrix_487	AT1G29160	Not Available	52.37%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	52.34%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.29%
Matrix_517	ERF12	Not Available	52.29%
Matrix_411	DOF5.6	Not Available	52.23%
Matrix_70	GATA26	Not Available	52.22%
Matrix_61	ATCBF3	Not Available	52.21%
Matrix_475	AT5G64220	Not Available	52.16%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.11%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	52.06%
Matrix_86	CRF5; CRF6; CRF4	Not Available	51.91%
Matrix_373	E2FE	Not Available	51.91%
Matrix_308	INO	Not Available	51.89%
Matrix_491	AT1G68670; AT3G25790	Not Available	51.82%
Matrix_460	NAM; anac025; ATNAC2	Not Available	51.68%
Matrix_277	RAP2.6	Not Available	51.64%
Matrix_259	AT1G50680; AT1G51120	Not Available	51.62%
Matrix_142	ZFP8	Not Available	51.60%
Matrix_12	EIN3; EIL2	Not Available	51.51%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	51.45%
Matrix_271	AT3G16350	Not Available	51.35%
Matrix_197	NAP	Not Available	51.33%
Motif_443	KN1; BP	The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity	51.30%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	51.24%
Matrix_248	ZFP5	Not Available	51.23%
Matrix_423	AT3G04030	Not Available	51.18%
Matrix_296	GBF2	Not Available	51.13%
Matrix_255	cdf3	Not Available	51.08%
Motif_436	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.94%
Matrix_216	TCP16	Not Available	50.84%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.80%
Motif_71	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	50.77%
Matrix_152	EIL1; AT5G65100	Not Available	50.69%
Matrix_69	AT2G03500	Not Available	50.65%
Matrix_151	ASIL1	Not Available	50.57%
Matrix_300	bZIP68; bZIP16	Not Available	50.54%
Matrix_521	AHL20	Not Available	50.53%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	50.53%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.51%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.48%
Matrix_472	ZN_C2_H2	Not Available	50.43%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.40%
Matrix_336	AT5G08520	Not Available	50.39%
Matrix_141	AT3G25990	Not Available	50.36%
Matrix_220	WRKY18	Not Available	50.32%
Matrix_409	DEAR3	Not Available	50.25%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	50.24%
Matrix_174	ZAT2	Not Available	50.21%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.19%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	50.16%
Matrix_224	ERF1	Not Available	50.14%
Motif_326	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.14%
Motif_431	E2Fb	Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities	50.11%
Matrix_38	SPL14	Not Available	50.08%
Matrix_23	ANAC46	Not Available	50.02%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	50.01%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%