| Matrix_202 | WRKY71; WRKY28; WRKY8 | Not Available | | 92.85% |
| Matrix_415 | WRKY27 | Not Available | | 91.47% |
| Matrix_504 | WRKY40 | Not Available | | 88.34% |
| Matrix_3 | WRKY48 | Not Available | | 83.79% |
| Matrix_316 | WRKY15; WRKY39; WRKY7; WRKY74 | Not Available | | 82.76% |
| Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 82.74% |
| Matrix_370 | WRKY50; WRKY51 | Not Available | | 82.25% |
| Matrix_314 | WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52 | Not Available | | 80.48% |
| Matrix_500 | WRKY43 | Not Available | | 79.83% |
| Matrix_75 | WRKY29 | Not Available | | 78.82% |
| Matrix_384 | ATWRKY17 | Not Available | | 78.49% |
| Matrix_102 | WRKY21 | Not Available | | 77.98% |
| Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 77.62% |
| Matrix_220 | WRKY18 | Not Available | | 77.58% |
| Matrix_249 | WRKY11 | Not Available | | 77.04% |
| Matrix_325 | WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2 | Not Available | | 75.94% |
| Matrix_17 | WRKY22 | Not Available | | 75.47% |
| Matrix_368 | ATWRKY56; WRKY45; WRKY75; WRKY24 | Not Available | | 75.31% |
| Matrix_235 | WRKY67; WRKY64; WRKY63; WRKY66 | Not Available | | 74.00% |
| Matrix_289 | WRKY25 | Not Available | | 73.15% |
| Matrix_470 | WRKY18 | Not Available | | 72.42% |
| Matrix_245 | WRKY62; WRKY38 | Not Available | | 69.88% |
| Matrix_142 | ZFP8 | Not Available | | 69.88% |
| Matrix_91 | CRF3 | Not Available | | 69.12% |
| Matrix_238 | WRKY59; WRKY23; WRKY68 | Not Available | | 68.82% |
| Matrix_333 | GATA3 | Not Available | | 68.62% |
| Matrix_261 | ATERF-1 | Not Available | | 68.26% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 67.87% |
| Matrix_37 | GATA27 | Not Available | | 67.55% |
| Matrix_70 | GATA26 | Not Available | | 67.32% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 67.25% |
| Matrix_99 | DOF4.7 | Not Available | | 66.77% |
| Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 66.73% |
| Matrix_188 | SPL4 | Not Available | | 65.98% |
| Matrix_321 | HRD | Not Available | | 65.71% |
| Matrix_12 | EIN3; EIL2 | Not Available | | 64.93% |
| Matrix_341 | HMGA | Not Available | | 64.82% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 64.75% |
| Matrix_248 | ZFP5 | Not Available | | 64.50% |
| Matrix_84 | AtGRF6 | Not Available | | 64.21% |
| Matrix_457 | TGA2 | Not Available | | 64.05% |
| Matrix_256 | IXR11; KNAT5; KNAT4; KNAT3 | Not Available | | 64.03% |
| Matrix_85 | SPL5 | Not Available | | 63.86% |
| Matrix_221 | SPL7 | Not Available | | 63.67% |
| Matrix_199 | AT1G69170; SPL9; SPL15; SPL13A; SPL13B | Not Available | | 63.62% |
| Matrix_241 | HB-1; AT5G44180 | Not Available | | 63.48% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 63.47% |
| Matrix_334 | AT3G23230 | Not Available | | 63.28% |
| Matrix_152 | EIL1; AT5G65100 | Not Available | | 63.23% |
| Matrix_418 | KNAT6; KNAT2 | Not Available | | 62.90% |
| Matrix_450 | SPL7 | Not Available | | 62.69% |
| Matrix_253 | ETT | Not Available | | 62.56% |
| Matrix_78 | AT3G45610 | Not Available | | 62.54% |
| Matrix_148 | WRKY60 | Not Available | | 62.37% |
| Matrix_505 | GATA8 | Not Available | | 62.11% |
| Matrix_46 | AT4G21895 | Not Available | | 61.71% |
| Matrix_425 | TIFY2A | Not Available | | 61.64% |
| Matrix_489 | RAV1 | Not Available | | 61.60% |
| Matrix_52 | ZAT18 | Not Available | | 61.58% |
| Matrix_492 | ETT | Not Available | | 61.50% |
| Matrix_357 | WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72 | Not Available | | 61.46% |
| Matrix_169 | E2F1 | Not Available | | 61.34% |
| Matrix_100 | AT1G48610 | Not Available | | 61.20% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 61.18% |
| Matrix_507 | TCP3 | Not Available | | 61.11% |
| Matrix_151 | ASIL1 | Not Available | | 60.80% |
| Matrix_177 | ADOF2 | Not Available | | 60.77% |
| Matrix_423 | AT3G04030 | Not Available | | 60.19% |
| Matrix_175 | Dof5.7 | Not Available | | 59.90% |
| Matrix_390 | GT-1 | Not Available | | 59.70% |
| Matrix_328 | AT1G76580 | Not Available | | 59.62% |
| Matrix_427 | ZAT14 | Not Available | | 59.49% |
| Matrix_38 | SPL14 | Not Available | | 59.45% |
| Matrix_53 | MYC3 | Not Available | | 59.42% |
| Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 59.26% |
| Matrix_58 | WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30 | Not Available | | 59.23% |
| Matrix_101 | ERF5 | Not Available | | 59.18% |
| Matrix_165 | KNAT1 | Not Available | | 58.93% |
| Matrix_399 | TGA1 | Not Available | | 58.87% |
| Matrix_285 | DDF1 | Not Available | | 58.79% |
| Matrix_307 | RGL2; RGL3 | Not Available | | 58.68% |
| Matrix_382 | AT3G04850 | Not Available | | 58.59% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 58.50% |
| Matrix_502 | AT3G13040 | Not Available | | 58.35% |
| Matrix_411 | DOF5.6 | Not Available | | 58.10% |
| Matrix_203 | GATA9; GATA12 | Not Available | | 58.01% |
| Matrix_453 | EIL3 | Not Available | | 57.98% |
| Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 57.96% |
| Matrix_236 | CCA1 | Not Available | | 57.64% |
| Matrix_296 | GBF2 | Not Available | | 57.63% |
| Matrix_436 | AT3G49930; AZF1 | Not Available | | 57.59% |
| Matrix_274 | EDF3 | Not Available | | 57.51% |
| Matrix_141 | AT3G25990 | Not Available | | 57.50% |
| Matrix_308 | INO | Not Available | | 57.41% |
| Matrix_198 | STZ; C2H2; AZF3 | Not Available | | 57.34% |
| Matrix_503 | AT2G37430; AT3G53600 | Not Available | | 57.09% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 57.06% |
| Matrix_463 | HAT3.1 | Not Available | | 57.05% |
| Matrix_260 | CAMTA3 | Not Available | | 56.88% |
| Matrix_96 | TMO6 | Not Available | | 56.82% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 56.59% |
| Matrix_164 | AT1G02030; AT2G45120; AZF2; AT3G60580 | Not Available | | 56.55% |
| Matrix_137 | SPL1; SPL12 | Not Available | | 56.53% |
| Matrix_287 | ERF2 | Not Available | | 56.50% |
| Matrix_277 | RAP2.6 | Not Available | | 56.29% |
| Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 56.21% |
| Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 56.14% |
| Matrix_379 | RHL41 | Not Available | | 56.05% |
| Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 56.04% |
| Matrix_216 | TCP16 | Not Available | | 56.00% |
| Matrix_336 | AT5G08520 | Not Available | | 55.99% |
| Matrix_239 | AT5G04390 | Not Available | | 55.87% |
| Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 55.85% |
| Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 55.83% |
| Matrix_300 | bZIP68; bZIP16 | Not Available | | 55.75% |
| Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | | 55.66% |
| Matrix_14 | ZCW32; AT5G62610 | Not Available | | 55.62% |
| Matrix_26 | ATMYB3; MYB24 | Not Available | | 55.46% |
| Matrix_279 | HRS1 | Not Available | | 55.36% |
| Motif_491 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 55.28% |
| Matrix_35 | YAB5; YAB3 | Not Available | | 55.27% |
| Motif_123 | GT-1 | Molecular dissection of GT-1 from Arabidopsis | | 55.27% |
| Matrix_81 | YAB1 | Not Available | | 55.23% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 55.17% |
| Matrix_171 | LBD3; LBD4 | Not Available | | 55.17% |
| Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 54.88% |
| Matrix_519 | ATDOF2.4 | Not Available | | 54.78% |
| Matrix_93 | YAB5 | Not Available | | 54.72% |
| Motif_71 | WRKY63 | ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis | | 54.51% |
| Matrix_126 | RBE | Not Available | | 54.46% |
| Matrix_329 | WRKY12 | Not Available | | 54.40% |
| Matrix_97 | APRR2 | Not Available | | 54.37% |
| Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 54.37% |
| Matrix_196 | TCP20; AT5G41030 | Not Available | | 54.34% |
| Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 54.34% |
| Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | | 54.31% |
| Matrix_312 | ARF11; MP; ARF6; IAA21; ARF8; ARF4 | Not Available | | 54.17% |
| Matrix_293 | WRKY38 | Not Available | | 53.78% |
| Motif_26 | GRF7 | Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A | | 53.75% |
| Matrix_227 | AT1G64620 | Not Available | | 53.72% |
| Matrix_431 | ATHB21; HB-3 | Not Available | | 53.64% |
| Matrix_218 | TIFY2B; TIFY1 | Not Available | | 53.58% |
| Matrix_240 | AT4G29000 | Not Available | | 53.52% |
| Matrix_195 | GATA2; GATA4 | Not Available | | 53.44% |
| Matrix_157 | LHY; RVE2 | Not Available | | 53.40% |
| Motif_122 | TGTCACACMCUCUMISIN | TGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin gene | | 53.33% |
| Matrix_112 | TBP2; TFIID-1 | Not Available | | 53.32% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 53.24% |
| Matrix_343 | AT2G33710 | Not Available | | 53.22% |
| Matrix_311 | TGA1 | Not Available | | 53.10% |
| Matrix_31 | SPL1 | Not Available | | 53.01% |
| Matrix_475 | AT5G64220 | Not Available | | 52.94% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 52.93% |
| Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | | 52.88% |
| Matrix_163 | AT2G20110 | Not Available | | 52.85% |
| Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 52.78% |
| Matrix_283 | GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC | Not Available | | 52.76% |
| Matrix_409 | DEAR3 | Not Available | | 52.70% |
| Matrix_139 | OBF5 | Not Available | | 52.68% |
| Matrix_182 | ATHB6 | Not Available | | 52.61% |
| Matrix_69 | AT2G03500 | Not Available | | 52.54% |
| Matrix_80 | BIM1 | Not Available | | 52.53% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 52.52% |
| Matrix_419 | TGA9; PAN; TGA6; bZIP65 | Not Available | | 52.46% |
| Matrix_226 | GATA1 | Not Available | | 52.46% |
| Motif_427 | LS7ATPR1 | LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors | | 52.39% |
| Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 52.33% |
| Matrix_286 | GATA7 | Not Available | | 52.32% |
| Matrix_416 | ASL5 | Not Available | | 52.22% |
| Matrix_380 | ATMYR1 | Not Available | | 52.14% |
| Matrix_281 | TCP13 | Not Available | | 52.11% |
| Matrix_367 | REM1 | Not Available | | 52.07% |
| Matrix_162 | AtPHR1 | Not Available | | 51.94% |
| Motif_393 | AUXREPSIAA4 | AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems | | 51.88% |
| Matrix_469 | NAC041; NAC083 | Not Available | | 51.86% |
| Matrix_110 | ATABI4; AT3G57600 | Not Available | | 51.86% |
| Matrix_389 | ILR3 | Not Available | | 51.81% |
| Matrix_128 | TGA2 | Not Available | | 51.70% |
| Matrix_54 | AHL20 | Not Available | | 51.66% |
| Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 51.64% |
| Matrix_212 | ATHB-12 | Not Available | | 51.62% |
| Matrix_32 | AHL25 | Not Available | | 51.58% |
| Matrix_352 | LEC2 | Not Available | | 51.55% |
| Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 51.49% |
| Matrix_45 | DRN | Not Available | | 51.39% |
| Matrix_206 | CUC1; ANAC100 | Not Available | | 51.36% |
| Matrix_432 | AT1G77920 | Not Available | | 51.20% |
| Matrix_234 | RAP2.3 | Not Available | | 51.15% |
| Matrix_87 | AT1G19000 | Not Available | | 51.13% |
| Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | | 51.10% |
| Matrix_61 | ATCBF3 | Not Available | | 51.09% |
| Matrix_420 | ANAC58 | Not Available | | 51.08% |
| Matrix_313 | ATMYB65; MYB33 | Not Available | | 51.00% |
| Matrix_120 | BEE2 | Not Available | | 50.98% |
| Matrix_426 | CRF1; CRF2 | Not Available | | 50.88% |
| Motif_284 | GT-2 | DNA binding factor GT-2 from Arabidopsis | | 50.83% |
| Matrix_56 | BZIP17; BZIP28; BZIP49 | Not Available | | 50.77% |
| Matrix_484 | ATERF13 | Not Available | | 50.70% |
| Motif_385 | GGTCCCATGMSAUR | Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | | 50.69% |
| Motif_293 | NONAMERATH4 | Nonamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 50.67% |
| Matrix_40 | TCP2 | Not Available | | 50.67% |
| Matrix_144 | AT5G08330; AT5G23280 | Not Available | | 50.58% |
| Matrix_421 | GLK1 | Not Available | | 50.47% |
| Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | | 50.36% |
| Matrix_408 | GATA12 | Not Available | | 50.33% |
| Matrix_461 | ATHB12 | Not Available | | 50.31% |
| Matrix_441 | ATHB5 | Not Available | | 50.28% |
| Matrix_190 | ATERF1 | Not Available | | 50.28% |
| Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | | 50.26% |
| Matrix_433 | ATERF1 | Not Available | | 50.23% |
| Matrix_406 | ATERF-7 | Not Available | | 50.20% |
| Matrix_397 | GT2L | Not Available | | 50.19% |
| Matrix_422 | TOE1 | Not Available | | 50.19% |
| Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | | 50.18% |
| Motif_490 | PROLAMINBOXOSGLUB1 | Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 gene | | 50.17% |
| Matrix_448 | ATERF6 | Not Available | | 50.13% |
| Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | | 50.09% |
| Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | | 50.09% |
| Matrix_452 | MYB46 | Not Available | | 50.04% |
| Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | | 50.00% |
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