PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_192
Name: FHY3/FAR1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	88.78%
Matrix_264	ATAREB1	Not Available	78.13%
Matrix_113	ABI5	Not Available	75.78%
Matrix_369	AT2G18300	Not Available	72.85%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	70.26%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	70.25%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	68.03%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	66.62%
Motif_232	ABADESI1	Responsive to ABA and desiccation; Motif I of rice rab16A-D (initially called rab-21); Expressed in seeds late during embryogenesis; Induced by ABA and osmotic stress in vegetative tissues; Contains ACGT motif; transacting factor: TAF-1	66.51%
Matrix_53	MYC3	Not Available	65.92%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	65.77%
Matrix_186	FHY3	Not Available	65.73%
Motif_534	GBOXRELOSAMY3	G box-related element found in Amy3D (amylase) promoter of rice; Similar to ABRE	65.65%
Motif_200	GBOXLERBCS	G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF	65.34%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	65.31%
Matrix_438	AtbZIP63	Not Available	65.10%
Matrix_332	SPT; ALC	Not Available	64.92%
Motif_273	ABRECE3HVA1	CE3 (coupling element 3) of ABRC3 in barley HVA1 gene; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	64.39%
Matrix_265	NGA3	Not Available	64.16%
Matrix_193	RAV1	Not Available	64.16%
Matrix_134	ABF1	Not Available	64.09%
Matrix_432	AT1G77920	Not Available	64.09%
Matrix_128	TGA2	Not Available	63.85%
Motif_616	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	63.81%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	63.60%
Matrix_311	TGA1	Not Available	63.20%
Motif_281	ABRE3OSRAB16	ABA-responsive element of rice rab16 and alpha-amylase genes	63.01%
Matrix_153	AP2	Not Available	62.87%
Matrix_92	AT1G33760	Not Available	62.70%
Matrix_176	MYB98	Not Available	62.53%
Matrix_166	TGA4	Not Available	62.27%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	62.25%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	62.11%
Matrix_399	TGA1	Not Available	62.04%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	61.59%
Motif_290	CCTCGTGTCTCGMGH3	Sequence found in D1 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	61.40%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	61.23%
Motif_244	ABRE-like binding site motif	Not Available	61.16%
Matrix_145	GBF4; AT5G44080	Not Available	61.13%
Matrix_446	LBD16	Not Available	61.13%
Matrix_133	DYT1	Not Available	61.01%
Matrix_77	PRR5	Not Available	60.66%
Motif_82	ACGTSEED3	ACGT motif related to seed expression; Gene: synthetic; wild-type motif (Iwt) containing G-box-related sequence; transacting factor: bZIP; A tobacco bZip transcription activator (TAF-1) binding site	60.26%
Matrix_180	SPL1	Not Available	60.22%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	60.20%
Matrix_467	RAV1	Not Available	60.20%
Matrix_477	RAV1	Not Available	60.20%
Matrix_244	DREB2C	Not Available	60.05%
Matrix_352	LEC2	Not Available	60.03%
Matrix_60	AT1G01260; AT5G57150	Not Available	60.00%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	59.97%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	59.73%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	59.64%
Matrix_150	UNE10; PIF7	Not Available	59.60%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	59.57%
Motif_638	ABRE binding site motif	Not Available	59.40%
Motif_291	ABFs binding site motif	Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element	59.34%
Matrix_194	HYH; HY5	Not Available	59.32%
Motif_652	AUXRETGA2GMGH3	TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224	59.28%
Matrix_260	CAMTA3	Not Available	59.27%
Matrix_406	ATERF-7	Not Available	59.25%
Matrix_320	MYC4	Not Available	59.18%
Matrix_365	AT1G10120; AT1G25330; CIB5; AT1G68920; AT3G23690; CIB1	Not Available	59.13%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	59.05%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	58.90%
Matrix_328	AT1G76580	Not Available	58.76%
Matrix_104	PI	Not Available	58.71%
Matrix_169	E2F1	Not Available	58.69%
Matrix_55	PIF3	Not Available	58.52%
Motif_641	LRENPCABE	LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241	58.43%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.37%
Matrix_462	ATERF-8	Not Available	58.34%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	58.31%
Matrix_367	REM1	Not Available	58.08%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	58.08%
Matrix_394	DREB_U	Not Available	58.07%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	58.06%
Motif_627	ACGTABREMOTIFA2OSEM	Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis	57.84%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	57.70%
Matrix_385	DEAR4	Not Available	57.66%
Matrix_139	OBF5	Not Available	57.66%
Motif_483	ABREMOTIFAOSOSEM	motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	57.52%
Matrix_323	BIM3	Not Available	57.49%
Matrix_397	GT2L	Not Available	57.39%
Matrix_448	ATERF6	Not Available	57.37%
Motif_36	OCETYPEIINTHISTONE	Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression	57.36%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	57.30%
Matrix_449	BIM2	Not Available	57.27%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	57.24%
Matrix_489	RAV1	Not Available	57.18%
Matrix_61	ATCBF3	Not Available	57.13%
Matrix_90	BEE1; BEE3; AT3G07340; AT5G48560; AT5G50915	Not Available	57.01%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.99%
Matrix_50	ATERF14; AT5G43410	Not Available	56.86%
Matrix_57	WIN1; SHN3; SHN2	Not Available	56.55%
Matrix_3	WRKY48	Not Available	56.54%
Matrix_443	AGL15	Not Available	56.51%
Matrix_75	WRKY29	Not Available	56.44%
Matrix_33	SPL11; SPL10; SPL2	Not Available	56.43%
Matrix_151	ASIL1	Not Available	56.43%
Matrix_233	MYC3	Not Available	56.32%
Matrix_476	bHLH115; bHLH34	Not Available	56.27%
Matrix_338	AP2	Not Available	56.25%
Matrix_430	TOE2	Not Available	56.25%
Matrix_214	AP1	Not Available	56.24%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	56.15%
Matrix_195	GATA2; GATA4	Not Available	56.11%
Matrix_122	ABF1; AREB2	Not Available	56.09%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	56.08%
Matrix_129	ABF1	Not Available	56.00%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.94%
Matrix_355	ERF10; ERF11	Not Available	55.90%
Matrix_25	AP3	Not Available	55.87%
Matrix_457	TGA2	Not Available	55.86%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	55.83%
Matrix_409	DEAR3	Not Available	55.81%
Matrix_330	MYC2; TT8	Not Available	55.80%
Motif_390	GLUTEBOX2OSGT2	Box II of rice glutelin Gt2 gene family; nuclear factor binding site	55.73%
Matrix_403	BZR1	Not Available	55.63%
Matrix_465	MYC4	Not Available	55.56%
Matrix_120	BEE2	Not Available	55.54%
Matrix_17	WRKY22	Not Available	55.48%
Matrix_504	WRKY40	Not Available	55.48%
Matrix_447	RVE1	Not Available	55.46%
Matrix_373	E2FE	Not Available	55.44%
Matrix_111	ABF3	Not Available	55.44%
Matrix_370	WRKY50; WRKY51	Not Available	55.42%
Matrix_203	GATA9; GATA12	Not Available	55.39%
Matrix_175	Dof5.7	Not Available	55.28%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	55.27%
Matrix_479	TOE1	Not Available	55.24%
Matrix_9	AT5G04760	Not Available	55.22%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	55.10%
Matrix_286	GATA7	Not Available	55.03%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	54.93%
Motif_542	ABI5; AtMYC2; HY5	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	54.93%
Matrix_259	AT1G50680; AT1G51120	Not Available	54.92%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	54.85%
Matrix_135	ABI3	Not Available	54.76%
Matrix_387	ORA47	Not Available	54.76%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	54.73%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.73%
Matrix_308	INO	Not Available	54.71%
Matrix_247	PIF3	Not Available	54.63%
Matrix_64	PIF5	Not Available	54.54%
Matrix_359	FLC	Not Available	54.50%
Matrix_408	GATA12	Not Available	54.46%
Matrix_437	MYC2	Not Available	54.44%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	54.35%
Matrix_226	GATA1	Not Available	54.34%
Matrix_433	ATERF1	Not Available	54.31%
Matrix_456	bZIP60	Not Available	54.26%
Motif_473	ABREOSRGA1	ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia	54.23%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	54.23%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	54.23%
Matrix_271	AT3G16350	Not Available	54.22%
Motif_72	GADOWNAT	Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE	54.17%
Matrix_277	RAP2.6	Not Available	54.04%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	54.02%
Matrix_502	AT3G13040	Not Available	53.87%
Matrix_322	NST3; ANAC015; BRN2	Not Available	53.68%
Matrix_384	ATWRKY17	Not Available	53.67%
Motif_558	BOXIIPCCHS	Core of Box II/G box found in the parsley chs genes; Essential for light regulation	53.67%
Matrix_363	RAP2.3	Not Available	53.58%
Motif_282	D4GMAUX28	D4; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes	53.56%
Matrix_83	PRR5	Not Available	53.54%
Matrix_415	WRKY27	Not Available	53.45%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	53.43%
Matrix_339	bHLH104	Not Available	53.36%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	53.27%
Matrix_59	AT4G00238; AT4G00250	Not Available	53.26%
Matrix_224	ERF1	Not Available	53.17%
Matrix_389	ILR3	Not Available	53.16%
Matrix_398	TBP2; ATTRB2	Not Available	53.12%
Matrix_37	GATA27	Not Available	53.10%
Matrix_79	FUS3	Not Available	53.09%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	53.06%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	53.06%
Matrix_106	AT5G47390	Not Available	53.06%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.05%
Matrix_298	RAV1	Not Available	52.95%
Matrix_413	RAV1	Not Available	52.95%
Matrix_480	BES1	Not Available	52.94%
Matrix_52	ZAT18	Not Available	52.92%
Matrix_11	TRFL5	Not Available	52.84%
Matrix_210	ARR1	Not Available	52.82%
Matrix_85	SPL5	Not Available	52.80%
Matrix_69	AT2G03500	Not Available	52.79%
Matrix_410	TOE2	Not Available	52.75%
Matrix_427	ZAT14	Not Available	52.74%
Matrix_4	ARR14	Not Available	52.74%
Matrix_329	WRKY12	Not Available	52.66%
Matrix_116	ANAC55	Not Available	52.66%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.57%
Matrix_162	AtPHR1	Not Available	52.55%
Matrix_143	GATA14; GATA6; GATA5	Not Available	52.50%
Matrix_115	AGL15	Not Available	52.49%
Matrix_184	AGL15	Not Available	52.48%
Matrix_144	AT5G08330; AT5G23280	Not Available	52.45%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	52.40%
Matrix_293	WRKY38	Not Available	52.39%
Matrix_84	AtGRF6	Not Available	52.36%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	52.34%
Matrix_119	RRTF1	Not Available	52.34%
Matrix_420	ANAC58	Not Available	52.33%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.26%
Motif_557	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	52.26%
Matrix_434	ARR11	Not Available	52.24%
Matrix_130	TCP16	Not Available	52.22%
Matrix_70	GATA26	Not Available	52.20%
Motif_600	JASE2 motif in OPR1	JASE2found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	52.19%
Matrix_333	GATA3	Not Available	52.16%
Matrix_197	NAP	Not Available	52.14%
Matrix_12	EIN3; EIL2	Not Available	52.13%
Matrix_171	LBD3; LBD4	Not Available	52.04%
Motif_541	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.02%
Matrix_220	WRKY18	Not Available	51.95%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	51.94%
Motif_685	PALINDROMICCBOXGM	Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence	51.82%
Matrix_6	AT1G70000	Not Available	51.77%
Matrix_361	AT1G25550	Not Available	51.71%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	51.67%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.67%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	51.67%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	51.66%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	51.64%
Matrix_491	AT1G68670; AT3G25790	Not Available	51.62%
Matrix_376	WRKY45	Not Available	51.57%
Matrix_324	AT2G01060	Not Available	51.55%
Matrix_93	YAB5	Not Available	51.55%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	51.52%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	51.52%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.51%
Matrix_40	TCP2	Not Available	51.48%
Matrix_450	SPL7	Not Available	51.44%
Matrix_16	AT3G04450; PHL1	Not Available	51.37%
Motif_314	HY5AT	G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl	51.35%
Matrix_302	HAT1; HAT2	Not Available	51.35%
Matrix_102	WRKY21	Not Available	51.34%
Matrix_288	RAP2.3	Not Available	51.32%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	51.29%
Matrix_101	ERF5	Not Available	51.27%
Matrix_509	LEC2	Not Available	51.25%
Matrix_173	ZAP1	Not Available	51.24%
Matrix_278	AtbZIP44	Not Available	51.23%
Matrix_405	DREB2C	Not Available	51.18%
Matrix_500	WRKY43	Not Available	51.14%
Motif_414	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	51.10%
Motif_448	IRO2OS	OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency	51.01%
Motif_119	ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.99%
Motif_518	SPHCOREZMC1	Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone response	50.99%
Matrix_87	AT1G19000	Not Available	50.98%
Matrix_495	HD-GL2-1; ANL2	Not Available	50.97%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.95%
Motif_440	TGA1 binding site motif	Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	50.95%
Motif_573	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.95%
Matrix_494	OBP4	Not Available	50.89%
Motif_4	NAP	An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves	50.87%
Motif_165	AP3SV40	AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2	50.85%
Matrix_392	ARR2	Not Available	50.82%
Matrix_402	TOE1	Not Available	50.79%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	50.76%
Matrix_273	ANAC55	Not Available	50.75%
Matrix_439	AP3	Not Available	50.67%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	50.60%
Matrix_349	CDC5	Not Available	50.60%
Matrix_187	CDC5	Not Available	50.60%
Matrix_321	HRD	Not Available	50.60%
Matrix_285	DDF1	Not Available	50.54%
Matrix_148	WRKY60	Not Available	50.53%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	50.47%
Matrix_237	MYB55	Not Available	50.46%
Matrix_274	EDF3	Not Available	50.36%
Matrix_65	POC1; PIL1	Not Available	50.32%
Matrix_211	MYB3	Not Available	50.26%
Matrix_230	ARR11	Not Available	50.25%
Matrix_109	GBF3	Not Available	50.25%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	50.24%
Matrix_470	WRKY18	Not Available	50.21%
Matrix_422	TOE1	Not Available	50.16%
Matrix_366	ARR14	Not Available	50.16%
Matrix_219	AGL15	Not Available	50.15%
Motif_468	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	50.13%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	50.04%
Matrix_234	RAP2.3	Not Available	50.02%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	50.00%