PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_169
Name: E2F1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_406	ATERF-7	Not Available	73.77%
Matrix_91	CRF3	Not Available	73.52%
Matrix_462	ATERF-8	Not Available	72.21%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	71.60%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	71.52%
Matrix_355	ERF10; ERF11	Not Available	71.33%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	71.12%
Matrix_261	ATERF-1	Not Available	70.98%
Matrix_493	AT1G22985; AT1G71130	Not Available	70.61%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	68.83%
Matrix_463	HAT3.1	Not Available	68.46%
Matrix_110	ATABI4; AT3G57600	Not Available	68.29%
Matrix_50	ATERF14; AT5G43410	Not Available	68.08%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	68.05%
Matrix_363	RAP2.3	Not Available	67.72%
Matrix_373	E2FE	Not Available	67.72%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	67.65%
Matrix_321	HRD	Not Available	67.30%
Matrix_80	BIM1	Not Available	67.04%
Matrix_70	GATA26	Not Available	66.51%
Matrix_144	AT5G08330; AT5G23280	Not Available	66.45%
Matrix_260	CAMTA3	Not Available	66.42%
Matrix_59	AT4G00238; AT4G00250	Not Available	66.41%
Matrix_446	LBD16	Not Available	66.37%
Matrix_507	TCP3	Not Available	66.32%
Matrix_308	INO	Not Available	66.01%
Matrix_224	ERF1	Not Available	65.62%
Matrix_52	ZAT18	Not Available	65.60%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	65.49%
Matrix_415	WRKY27	Not Available	65.46%
Matrix_288	RAP2.3	Not Available	65.43%
Matrix_197	NAP	Not Available	65.21%
Matrix_57	WIN1; SHN3; SHN2	Not Available	65.11%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	65.03%
Matrix_311	TGA1	Not Available	64.92%
Matrix_502	AT3G13040	Not Available	64.92%
Matrix_196	TCP20; AT5G41030	Not Available	64.47%
Matrix_40	TCP2	Not Available	64.27%
Matrix_12	EIN3; EIL2	Not Available	64.22%
Matrix_277	RAP2.6	Not Available	64.02%
Matrix_128	TGA2	Not Available	63.96%
Matrix_333	GATA3	Not Available	63.89%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	63.86%
Matrix_37	GATA27	Not Available	63.78%
Matrix_109	GBF3	Not Available	63.74%
Matrix_380	ATMYR1	Not Available	63.68%
Matrix_374	AT5G07580; AT5G61590	Not Available	63.24%
Matrix_296	GBF2	Not Available	63.10%
Matrix_151	ASIL1	Not Available	63.05%
Matrix_343	AT2G33710	Not Available	62.96%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	62.86%
Matrix_3	WRKY48	Not Available	62.84%
Matrix_143	GATA14; GATA6; GATA5	Not Available	62.75%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	62.62%
Matrix_409	DEAR3	Not Available	62.57%
Matrix_300	bZIP68; bZIP16	Not Available	62.48%
Matrix_119	RRTF1	Not Available	62.47%
Matrix_472	ZN_C2_H2	Not Available	62.39%
Matrix_450	SPL7	Not Available	62.32%
Matrix_17	WRKY22	Not Available	62.18%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	61.89%
Matrix_101	ERF5	Not Available	61.84%
Matrix_174	ZAT2	Not Available	61.71%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	61.66%
Matrix_138	RRTF1	Not Available	61.65%
Matrix_432	AT1G77920	Not Available	61.58%
Matrix_75	WRKY29	Not Available	61.37%
Matrix_331	GBF1	Not Available	61.20%
Matrix_166	TGA4	Not Available	61.17%
Matrix_226	GATA1	Not Available	60.99%
Matrix_146	ORA47	Not Available	60.74%
Matrix_206	CUC1; ANAC100	Not Available	60.73%
Matrix_84	AtGRF6	Not Available	60.68%
Matrix_42	AT2G45680	Not Available	60.67%
Matrix_259	AT1G50680; AT1G51120	Not Available	60.65%
Matrix_328	AT1G76580	Not Available	60.53%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	60.53%
Matrix_334	AT3G23230	Not Available	60.47%
Matrix_370	WRKY50; WRKY51	Not Available	60.42%
Matrix_286	GATA7	Not Available	60.31%
Matrix_348	AT5G51910	Not Available	60.19%
Matrix_113	ABI5	Not Available	60.08%
Matrix_287	ERF2	Not Available	60.05%
Matrix_504	WRKY40	Not Available	60.04%
Matrix_41	anac058	Not Available	59.79%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	59.75%
Matrix_234	RAP2.3	Not Available	59.47%
Matrix_482	AT2G25650; AT4G00270	Not Available	59.42%
Matrix_418	KNAT6; KNAT2	Not Available	59.23%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	58.99%
Matrix_141	AT3G25990	Not Available	58.89%
Matrix_188	SPL4	Not Available	58.81%
Matrix_171	LBD3; LBD4	Not Available	58.59%
Matrix_484	ATERF13	Not Available	58.59%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.53%
Matrix_399	TGA1	Not Available	58.46%
Matrix_272	DEAR4	Not Available	58.41%
Matrix_423	AT3G04030	Not Available	58.36%
Matrix_448	ATERF6	Not Available	58.25%
Matrix_97	APRR2	Not Available	58.24%
Matrix_221	SPL7	Not Available	58.20%
Matrix_243	RAP2.12; RAP2.2	Not Available	58.20%
Matrix_152	EIL1; AT5G65100	Not Available	58.13%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	58.08%
Matrix_387	ORA47	Not Available	58.07%
Matrix_473	RRTF1	Not Available	58.04%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	58.03%
Matrix_352	LEC2	Not Available	58.00%
Matrix_87	AT1G19000	Not Available	57.97%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	57.92%
Matrix_420	ANAC58	Not Available	57.66%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	57.52%
Matrix_46	AT4G21895	Not Available	57.41%
Matrix_45	DRN	Not Available	57.39%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	57.32%
Matrix_384	ATWRKY17	Not Available	57.29%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	57.23%
Matrix_322	NST3; ANAC015; BRN2	Not Available	57.16%
Matrix_416	ASL5	Not Available	57.16%
Matrix_378	ATERF1	Not Available	57.16%
Matrix_505	GATA8	Not Available	57.14%
Matrix_86	CRF5; CRF6; CRF4	Not Available	56.93%
Matrix_433	ATERF1	Not Available	56.89%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	56.79%
Matrix_102	WRKY21	Not Available	56.71%
Matrix_506	DRNL; ATERF-4	Not Available	56.50%
Matrix_252	RAP2.6	Not Available	56.50%
Matrix_405	DREB2C	Not Available	56.50%
Matrix_230	ARR11	Not Available	56.40%
Matrix_53	MYC3	Not Available	56.40%
Matrix_130	TCP16	Not Available	56.34%
Matrix_489	RAV1	Not Available	56.32%
Matrix_492	ETT	Not Available	56.30%
Matrix_271	AT3G16350	Not Available	56.27%
Matrix_193	RAV1	Not Available	56.24%
Matrix_265	NGA3	Not Available	56.24%
Matrix_142	ZFP8	Not Available	56.23%
Matrix_69	AT2G03500	Not Available	56.20%
Matrix_332	SPT; ALC	Not Available	56.00%
Matrix_195	GATA2; GATA4	Not Available	55.93%
Matrix_186	FHY3	Not Available	55.90%
Matrix_297	TCP15	Not Available	55.79%
Matrix_469	NAC041; NAC083	Not Available	55.79%
Matrix_500	WRKY43	Not Available	55.76%
Matrix_162	AtPHR1	Not Available	55.72%
Matrix_10	STY1	Not Available	55.68%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	55.53%
Matrix_85	SPL5	Not Available	55.49%
Matrix_26	ATMYB3; MYB24	Not Available	55.38%
Matrix_426	CRF1; CRF2	Not Available	55.34%
Matrix_220	WRKY18	Not Available	55.33%
Matrix_491	AT1G68670; AT3G25790	Not Available	55.27%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	55.24%
Matrix_227	AT1G64620	Not Available	55.21%
Matrix_470	WRKY18	Not Available	55.17%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	55.17%
Matrix_427	ZAT14	Not Available	55.09%
Matrix_190	ATERF1	Not Available	55.08%
Matrix_156	POC1	Not Available	54.98%
Matrix_295	ERF1	Not Available	54.93%
Matrix_147	ERF3; AT1G80580	Not Available	54.92%
Matrix_249	WRKY11	Not Available	54.89%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	54.86%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.70%
Matrix_360	ORA59	Not Available	54.67%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	54.65%
Matrix_341	HMGA	Not Available	54.64%
Matrix_517	ERF12	Not Available	54.61%
Matrix_61	ATCBF3	Not Available	54.51%
Matrix_307	RGL2; RGL3	Not Available	54.48%
Matrix_350	ARR14	Not Available	54.43%
Matrix_438	AtbZIP63	Not Available	54.38%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	54.38%
Matrix_23	ANAC46	Not Available	54.21%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	54.08%
Matrix_389	ILR3	Not Available	54.06%
Matrix_232	TCP23	Not Available	53.95%
Matrix_122	ABF1; AREB2	Not Available	53.93%
Matrix_78	AT3G45610	Not Available	53.88%
Matrix_367	REM1	Not Available	53.86%
Matrix_93	YAB5	Not Available	53.74%
Matrix_408	GATA12	Not Available	53.45%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	53.42%
Matrix_14	ZCW32; AT5G62610	Not Available	53.21%
Matrix_216	TCP16	Not Available	53.19%
Matrix_274	EDF3	Not Available	52.97%
Motif_435	E2FBNTRNR	E2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiation	52.94%
Matrix_241	HB-1; AT5G44180	Not Available	52.91%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	52.89%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.82%
Matrix_16	AT3G04450; PHL1	Not Available	52.75%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.67%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.66%
Motif_541	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	52.63%
Matrix_344	ATERF15; AT4G18450	Not Available	52.62%
Matrix_447	RVE1	Not Available	52.44%
Matrix_38	SPL14	Not Available	52.37%
Matrix_518	AT2G21230	Not Available	52.35%
Matrix_92	AT1G33760	Not Available	52.25%
Matrix_392	ARR2	Not Available	52.16%
Motif_92	ABREATRD22	ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22	52.15%
Matrix_33	SPL11; SPL10; SPL2	Not Available	52.11%
Matrix_212	ATHB-12	Not Available	52.10%
Matrix_475	AT5G64220	Not Available	52.07%
Matrix_211	MYB3	Not Available	52.05%
Matrix_457	TGA2	Not Available	52.02%
Motif_326	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	51.95%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	51.79%
Matrix_31	SPL1	Not Available	51.79%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	51.76%
Matrix_99	DOF4.7	Not Available	51.74%
Matrix_335	HSFB2A	Not Available	51.67%
Matrix_203	GATA9; GATA12	Not Available	51.57%
Matrix_139	OBF5	Not Available	51.49%
Matrix_120	BEE2	Not Available	51.45%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.38%
Matrix_361	AT1G25550	Not Available	51.36%
Matrix_20	ANAC030; NST1; NAC066	Not Available	51.34%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.34%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.29%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.28%
Matrix_362	DEAR3	Not Available	51.22%
Matrix_244	DREB2C	Not Available	51.21%
Matrix_170	AT5G47660	Not Available	51.19%
Matrix_397	GT2L	Not Available	51.13%
Matrix_323	BIM3	Not Available	51.09%
Matrix_5	AT5G51190; ERF104	Not Available	51.09%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	50.91%
Matrix_480	BES1	Not Available	50.89%
Matrix_67	GLK1	Not Available	50.84%
Matrix_253	ETT	Not Available	50.81%
Matrix_236	CCA1	Not Available	50.75%
Matrix_516	ANAC038; ANAC079	Not Available	50.74%
Matrix_330	MYC2; TT8	Not Available	50.72%
Matrix_369	AT2G18300	Not Available	50.71%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	50.67%
Motif_625	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	50.64%
Matrix_135	ABI3	Not Available	50.56%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	50.50%
Matrix_324	AT2G01060	Not Available	50.46%
Matrix_192	FHY3/FAR1	Not Available	50.43%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	50.40%
Matrix_248	ZFP5	Not Available	50.38%
Matrix_176	MYB98	Not Available	50.28%
Matrix_465	MYC4	Not Available	50.17%
Matrix_153	AP2	Not Available	50.16%
Matrix_281	TCP13	Not Available	50.10%
Matrix_313	ATMYB65; MYB33	Not Available	50.08%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	50.06%
Matrix_165	KNAT1	Not Available	50.06%
Matrix_100	AT1G48610	Not Available	50.02%