PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_16
Name: AT3G04450; PHL1
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_324	AT2G01060	Not Available	95.62%
Matrix_162	AtPHR1	Not Available	95.39%
Matrix_361	AT1G25550	Not Available	93.56%
Matrix_69	AT2G03500	Not Available	91.59%
Matrix_491	AT1G68670; AT3G25790	Not Available	91.42%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	90.28%
Matrix_210	ARR1	Not Available	86.24%
Matrix_4	ARR14	Not Available	85.95%
Matrix_423	AT3G04030	Not Available	84.61%
Matrix_97	APRR2	Not Available	81.80%
Matrix_502	AT3G13040	Not Available	76.67%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	75.87%
Matrix_380	ATMYR1	Not Available	73.88%
Matrix_157	LHY; RVE2	Not Available	73.30%
Matrix_87	AT1G19000	Not Available	72.45%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	72.32%
Matrix_336	AT5G08520	Not Available	71.35%
Matrix_328	AT1G76580	Not Available	70.63%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	69.53%
Matrix_152	EIL1; AT5G65100	Not Available	69.13%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	67.94%
Matrix_279	HRS1	Not Available	67.91%
Matrix_195	GATA2; GATA4	Not Available	67.87%
Matrix_308	INO	Not Available	67.83%
Matrix_286	GATA7	Not Available	67.63%
Matrix_99	DOF4.7	Not Available	67.28%
Matrix_101	ERF5	Not Available	67.27%
Matrix_341	HMGA	Not Available	67.16%
Matrix_259	AT1G50680; AT1G51120	Not Available	67.06%
Matrix_38	SPL14	Not Available	66.85%
Matrix_114	EPR1; AT3G10113	Not Available	66.83%
Matrix_142	ZFP8	Not Available	66.69%
Matrix_9	AT5G04760	Not Available	66.46%
Matrix_226	GATA1	Not Available	66.40%
Matrix_8	KAN1	Not Available	66.28%
Matrix_287	ERF2	Not Available	66.17%
Matrix_322	NST3; ANAC015; BRN2	Not Available	66.00%
Matrix_408	GATA12	Not Available	65.87%
Matrix_17	WRKY22	Not Available	65.81%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	65.81%
Matrix_392	ARR2	Not Available	65.75%
Matrix_201	AT1G74840	Not Available	65.72%
Matrix_258	WOX13	Not Available	65.63%
Matrix_421	GLK1	Not Available	65.16%
Matrix_249	WRKY11	Not Available	65.11%
Matrix_434	ARR11	Not Available	65.09%
Matrix_59	AT4G00238; AT4G00250	Not Available	64.96%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	64.89%
Matrix_489	RAV1	Not Available	64.77%
Matrix_75	WRKY29	Not Available	64.55%
Matrix_81	YAB1	Not Available	64.45%
Matrix_93	YAB5	Not Available	64.43%
Matrix_46	AT4G21895	Not Available	64.35%
Matrix_40	TCP2	Not Available	64.05%
Matrix_418	KNAT6; KNAT2	Not Available	63.95%
Matrix_78	AT3G45610	Not Available	63.87%
Matrix_3	WRKY48	Not Available	63.79%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	63.78%
Matrix_227	AT1G64620	Not Available	63.62%
Matrix_230	ARR11	Not Available	63.43%
Matrix_151	ASIL1	Not Available	63.26%
Matrix_160	RVE1	Not Available	63.23%
Matrix_370	WRKY50; WRKY51	Not Available	63.10%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	63.03%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	62.95%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	62.73%
Matrix_383	CCA1	Not Available	62.67%
Matrix_63	ARR10	Not Available	62.55%
Matrix_12	EIN3; EIL2	Not Available	62.22%
Matrix_350	ARR14	Not Available	62.18%
Matrix_248	ZFP5	Not Available	62.16%
Matrix_143	GATA14; GATA6; GATA5	Not Available	62.06%
Matrix_447	RVE1	Not Available	61.92%
Matrix_500	WRKY43	Not Available	61.80%
Matrix_182	ATHB6	Not Available	61.77%
Matrix_333	GATA3	Not Available	61.72%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	61.46%
Matrix_177	ADOF2	Not Available	61.46%
Matrix_271	AT3G16350	Not Available	61.38%
Matrix_84	AtGRF6	Not Available	61.12%
Matrix_144	AT5G08330; AT5G23280	Not Available	61.07%
Matrix_148	WRKY60	Not Available	60.99%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	60.96%
Matrix_425	TIFY2A	Not Available	60.75%
Matrix_126	RBE	Not Available	60.75%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	60.71%
Matrix_76	GATA10	Not Available	60.66%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	60.59%
Matrix_384	ATWRKY17	Not Available	60.57%
Matrix_125	AHL12	Not Available	60.54%
Matrix_355	ERF10; ERF11	Not Available	60.53%
Matrix_218	TIFY2B; TIFY1	Not Available	60.52%
Matrix_212	ATHB-12	Not Available	60.44%
Matrix_70	GATA26	Not Available	60.37%
Matrix_53	MYC3	Not Available	60.19%
Matrix_171	LBD3; LBD4	Not Available	59.94%
Matrix_120	BEE2	Not Available	59.94%
Motif_579	WRECSAA01	Wound-responsive element (WRE) found in the promoter region of cucumber ascorbate oxidase gene, CsAAO1; Binding site of proteins in tobacco nuclear extracts	59.94%
Matrix_241	HB-1; AT5G44180	Not Available	59.91%
Matrix_431	ATHB21; HB-3	Not Available	59.73%
Matrix_522	GATA11; GATA13	Not Available	59.69%
Matrix_374	AT5G07580; AT5G61590	Not Available	59.62%
Matrix_354	AHL12	Not Available	59.59%
Matrix_26	ATMYB3; MYB24	Not Available	59.55%
Matrix_37	GATA27	Not Available	59.43%
Matrix_100	AT1G48610	Not Available	59.36%
Matrix_461	ATHB12	Not Available	59.29%
Matrix_67	GLK1	Not Available	59.10%
Matrix_463	HAT3.1	Not Available	59.09%
Matrix_379	RHL41	Not Available	59.07%
Matrix_206	CUC1; ANAC100	Not Available	59.06%
Matrix_88	AHL12	Not Available	58.97%
Matrix_44	CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2	Not Available	58.93%
Matrix_102	WRKY21	Not Available	58.91%
Matrix_503	AT2G37430; AT3G53600	Not Available	58.83%
Matrix_260	CAMTA3	Not Available	58.82%
Matrix_465	MYC4	Not Available	58.78%
Motif_561	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	58.74%
Matrix_505	GATA8	Not Available	58.69%
Matrix_389	ILR3	Not Available	58.63%
Matrix_393	REM1	Not Available	58.59%
Matrix_204	WOX13	Not Available	58.52%
Matrix_239	AT5G04390	Not Available	58.52%
Matrix_234	RAP2.3	Not Available	58.49%
Matrix_416	ASL5	Not Available	58.43%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	58.41%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	58.30%
Matrix_313	ATMYB65; MYB33	Not Available	58.29%
Matrix_411	DOF5.6	Not Available	58.21%
Matrix_343	AT2G33710	Not Available	58.19%
Matrix_366	ARR14	Not Available	58.18%
Matrix_141	AT3G25990	Not Available	58.17%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	58.04%
Matrix_236	CCA1	Not Available	58.00%
Matrix_198	STZ; C2H2; AZF3	Not Available	57.97%
Matrix_507	TCP3	Not Available	57.91%
Matrix_330	MYC2; TT8	Not Available	57.88%
Matrix_435	ATHB51	Not Available	57.88%
Matrix_72	CDF2	Not Available	57.68%
Matrix_91	CRF3	Not Available	57.68%
Matrix_415	WRKY27	Not Available	57.29%
Matrix_106	AT5G47390	Not Available	57.28%
Matrix_85	SPL5	Not Available	57.27%
Matrix_493	AT1G22985; AT1G71130	Not Available	57.23%
Matrix_32	AHL25	Not Available	57.13%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	57.00%
Matrix_382	AT3G04850	Not Available	56.91%
Matrix_168	AHL25	Not Available	56.78%
Matrix_436	AT3G49930; AZF1	Not Available	56.77%
Matrix_444	AT1G19485; AT4G17950	Not Available	56.67%
Matrix_203	GATA9; GATA12	Not Available	56.62%
Matrix_190	ATERF1	Not Available	56.50%
Matrix_311	TGA1	Not Available	56.44%
Matrix_302	HAT1; HAT2	Not Available	56.39%
Matrix_52	ZAT18	Not Available	56.37%
Matrix_220	WRKY18	Not Available	56.32%
Matrix_323	BIM3	Not Available	56.20%
Matrix_348	AT5G51910	Not Available	56.18%
Matrix_261	ATERF-1	Not Available	56.13%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	56.09%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	55.93%
Matrix_71	ATHB7	Not Available	55.93%
Matrix_129	ABF1	Not Available	55.89%
Matrix_512	HAT3	Not Available	55.83%
Matrix_274	EDF3	Not Available	55.82%
Matrix_282	bZIP60	Not Available	55.78%
Matrix_427	ZAT14	Not Available	55.75%
Matrix_185	AHL25	Not Available	55.71%
Matrix_243	RAP2.12; RAP2.2	Not Available	55.58%
Matrix_327	ARR11	Not Available	55.52%
Matrix_57	WIN1; SHN3; SHN2	Not Available	55.44%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	55.23%
Matrix_35	YAB5; YAB3	Not Available	55.18%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	55.10%
Matrix_181	Dof5.7	Not Available	55.04%
Matrix_14	ZCW32; AT5G62610	Not Available	54.99%
Matrix_373	E2FE	Not Available	54.90%
Matrix_420	ANAC58	Not Available	54.90%
Matrix_273	ANAC55	Not Available	54.87%
Matrix_494	OBP4	Not Available	54.87%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	54.87%
Matrix_449	BIM2	Not Available	54.85%
Matrix_472	ZN_C2_H2	Not Available	54.79%
Matrix_255	cdf3	Not Available	54.78%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	54.77%
Matrix_254	MYB52	Not Available	54.68%
Matrix_139	OBF5	Not Available	54.66%
Matrix_42	AT2G45680	Not Available	54.62%
Matrix_50	ATERF14; AT5G43410	Not Available	54.59%
Matrix_54	AHL20	Not Available	54.58%
Matrix_197	NAP	Not Available	54.58%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	54.53%
Matrix_6	AT1G70000	Not Available	54.48%
Matrix_146	ORA47	Not Available	54.41%
Matrix_378	ATERF1	Not Available	54.38%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.34%
Motif_582	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	54.34%
Matrix_404	OBP4	Not Available	54.24%
Matrix_180	SPL1	Not Available	54.19%
Matrix_456	bZIP60	Not Available	54.14%
Matrix_495	HD-GL2-1; ANL2	Not Available	54.14%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	54.01%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	53.96%
Matrix_521	AHL20	Not Available	53.88%
Matrix_409	DEAR3	Not Available	53.75%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	53.70%
Matrix_441	ATHB5	Not Available	53.54%
Matrix_430	TOE2	Not Available	53.38%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	53.34%
Motif_167	SBP-box promoter motif	Molecular characterisation of the Arabidopsis SBP-box genes	53.32%
Matrix_228	TGA2	Not Available	53.09%
Matrix_122	ABF1; AREB2	Not Available	53.09%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	53.01%
Motif_464	ARR1; ARR2	Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators	52.99%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	52.87%
Matrix_429	KAN4	Not Available	52.75%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.75%
Matrix_169	E2F1	Not Available	52.75%
Matrix_406	ATERF-7	Not Available	52.58%
Matrix_96	TMO6	Not Available	52.57%
Matrix_109	GBF3	Not Available	52.56%
Matrix_471	KAN4	Not Available	52.49%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	52.47%
Matrix_519	ATDOF2.4	Not Available	52.24%
Matrix_20	ANAC030; NST1; NAC066	Not Available	52.21%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	52.16%
Matrix_62	HAT5	Not Available	52.15%
Matrix_174	ZAT2	Not Available	52.08%
Matrix_80	BIM1	Not Available	52.04%
Matrix_115	AGL15	Not Available	52.03%
Motif_253	S1FSORPL21	S1F binding site (S1 site) in spinach (S.o.) RPL21 gene encoding the plastid ribosomal protein L21; Negative element; Might play a role in downregulating RPL21 promoter activity	52.02%
Matrix_128	TGA2	Not Available	51.99%
Matrix_272	DEAR4	Not Available	51.94%
Matrix_473	RRTF1	Not Available	51.93%
Matrix_504	WRKY40	Not Available	51.74%
Matrix_41	anac058	Not Available	51.74%
Matrix_290	AP2	Not Available	51.68%
Matrix_237	MYB55	Not Available	51.50%
Motif_238	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	51.33%
Matrix_470	WRKY18	Not Available	51.27%
Matrix_130	TCP16	Not Available	51.26%
Motif_475	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.24%
Matrix_23	ANAC46	Not Available	51.23%
Motif_512	GLMHVCHORD	GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter	51.23%
Motif_341	NAM	Molecular characterization of AtNAM: a member of the Arabidopsis NAC domain superfamily	51.15%
Matrix_112	TBP2; TFIID-1	Not Available	51.09%
Matrix_321	HRD	Not Available	51.05%
Matrix_483	ICU4	Not Available	50.98%
Matrix_296	GBF2	Not Available	50.97%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	50.95%
Matrix_277	RAP2.6	Not Available	50.87%
Matrix_462	ATERF-8	Not Available	50.81%
Matrix_193	RAV1	Not Available	50.73%
Matrix_265	NGA3	Not Available	50.73%
Matrix_452	MYB46	Not Available	50.73%
Matrix_165	KNAT1	Not Available	50.71%
Matrix_457	TGA2	Not Available	50.71%
Matrix_175	Dof5.7	Not Available	50.68%
Matrix_412	GL1	Not Available	50.65%
Matrix_397	GT2L	Not Available	50.55%
Matrix_347	WOX14; WOX10	Not Available	50.52%
Matrix_178	HSFB2A	Not Available	50.50%
Matrix_499	ARR18	Not Available	50.49%
Matrix_61	ATCBF3	Not Available	50.34%
Matrix_300	bZIP68; bZIP16	Not Available	50.33%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.30%
Matrix_475	AT5G64220	Not Available	50.28%
Matrix_188	SPL4	Not Available	50.23%
Matrix_170	AT5G47660	Not Available	50.10%
Matrix_166	TGA4	Not Available	50.06%