PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_154
Name: AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_387	ORA47	Not Available	83.85%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	82.33%
Matrix_462	ATERF-8	Not Available	82.03%
Matrix_406	ATERF-7	Not Available	81.01%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	80.83%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	72.09%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	70.90%
Matrix_446	LBD16	Not Available	70.40%
Matrix_237	MYB55	Not Available	70.19%
Matrix_26	ATMYB3; MYB24	Not Available	69.17%
Matrix_169	E2F1	Not Available	68.83%
Matrix_277	RAP2.6	Not Available	68.53%
Matrix_409	DEAR3	Not Available	68.01%
Matrix_57	WIN1; SHN3; SHN2	Not Available	67.72%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	67.16%
Matrix_355	ERF10; ERF11	Not Available	66.98%
Matrix_308	INO	Not Available	66.38%
Matrix_363	RAP2.3	Not Available	66.35%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	66.34%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	66.02%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	66.00%
Matrix_478	AT1G01250	Not Available	65.67%
Matrix_45	DRN	Not Available	65.63%
Matrix_244	DREB2C	Not Available	65.60%
Matrix_311	TGA1	Not Available	65.39%
Matrix_242	AT2G25820; AT3G16280; AT4G32800; TINY2; tny	Not Available	65.30%
Matrix_61	ATCBF3	Not Available	65.26%
Matrix_50	ATERF14; AT5G43410	Not Available	65.13%
Matrix_394	DREB_U	Not Available	64.73%
Matrix_328	AT1G76580	Not Available	64.49%
Matrix_128	TGA2	Not Available	64.34%
Matrix_110	ATABI4; AT3G57600	Not Available	64.17%
Matrix_484	ATERF13	Not Available	64.10%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	64.07%
Matrix_92	AT1G33760	Not Available	64.06%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	63.97%
Matrix_295	ERF1	Not Available	63.90%
Matrix_147	ERF3; AT1G80580	Not Available	63.66%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	63.42%
Matrix_397	GT2L	Not Available	63.09%
Matrix_385	DEAR4	Not Available	63.05%
Matrix_59	AT4G00238; AT4G00250	Not Available	63.03%
Matrix_271	AT3G16350	Not Available	63.02%
Matrix_53	MYC3	Not Available	63.01%
Matrix_288	RAP2.3	Not Available	62.97%
Matrix_380	ATMYR1	Not Available	62.89%
Motif_478	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	62.36%
Matrix_166	TGA4	Not Available	62.17%
Matrix_432	AT1G77920	Not Available	62.06%
Matrix_344	ATERF15; AT4G18450	Not Available	61.94%
Matrix_119	RRTF1	Not Available	61.87%
Matrix_224	ERF1	Not Available	61.79%
Matrix_420	ANAC58	Not Available	61.75%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	61.63%
Matrix_84	AtGRF6	Not Available	61.58%
Matrix_360	ORA59	Not Available	61.46%
Matrix_292	FTQ4	Not Available	61.02%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	60.92%
Matrix_138	RRTF1	Not Available	60.88%
Matrix_12	EIN3; EIL2	Not Available	60.85%
Matrix_40	TCP2	Not Available	60.84%
Matrix_504	WRKY40	Not Available	60.82%
Matrix_321	HRD	Not Available	60.74%
Matrix_151	ASIL1	Not Available	60.29%
Matrix_109	GBF3	Not Available	60.28%
Motif_607	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	60.18%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	60.17%
Matrix_433	ATERF1	Not Available	60.15%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	60.11%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	60.10%
Matrix_93	YAB5	Not Available	59.88%
Matrix_463	HAT3.1	Not Available	59.84%
Matrix_171	LBD3; LBD4	Not Available	59.79%
Motif_620	DREB1&2 BS in rd29a	Related to responsiveness to drought, low-temperature or high-salt stress; Binding site of DREB1 and DREB2: Binding site of Arabidopsis CBF1(C-repeat/DRE binding factor); Overexpression of DREB1A activated the expression of stress tolerance genes; CBF1 overexpression induces COR genes and enhances freezing tolerance; Heterologous CBF1 expression enhances oxidative stresses tolerance; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis;Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor	59.76%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	59.67%
Matrix_448	ATERF6	Not Available	59.56%
Motif_100	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	59.53%
Matrix_87	AT1G19000	Not Available	59.40%
Matrix_23	ANAC46	Not Available	59.31%
Matrix_144	AT5G08330; AT5G23280	Not Available	59.28%
Matrix_259	AT1G50680; AT1G51120	Not Available	59.27%
Matrix_258	WOX13	Not Available	59.16%
Matrix_286	GATA7	Not Available	59.11%
Matrix_5	AT5G51190; ERF104	Not Available	59.07%
Matrix_226	GATA1	Not Available	59.04%
Matrix_491	AT1G68670; AT3G25790	Not Available	58.97%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.73%
Matrix_162	AtPHR1	Not Available	58.70%
Matrix_69	AT2G03500	Not Available	58.69%
Motif_97	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	58.54%
Matrix_423	AT3G04030	Not Available	58.52%
Matrix_106	AT5G47390	Not Available	58.51%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	58.50%
Matrix_518	AT2G21230	Not Available	58.43%
Matrix_416	ASL5	Not Available	58.43%
Matrix_78	AT3G45610	Not Available	58.35%
Matrix_369	AT2G18300	Not Available	58.31%
Matrix_333	GATA3	Not Available	58.23%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	58.23%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	58.08%
Matrix_427	ZAT14	Not Available	57.94%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	57.90%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	57.83%
Matrix_517	ERF12	Not Available	57.71%
Matrix_101	ERF5	Not Available	57.69%
Matrix_186	FHY3	Not Available	57.68%
Matrix_472	ZN_C2_H2	Not Available	57.64%
Matrix_139	OBF5	Not Available	57.56%
Matrix_70	GATA26	Not Available	57.23%
Matrix_152	EIL1; AT5G65100	Not Available	57.21%
Motif_461	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	57.12%
Matrix_97	APRR2	Not Available	57.11%
Matrix_195	GATA2; GATA4	Not Available	57.06%
Matrix_143	GATA14; GATA6; GATA5	Not Available	57.03%
Matrix_80	BIM1	Not Available	56.99%
Matrix_447	RVE1	Not Available	56.96%
Matrix_331	GBF1	Not Available	56.86%
Matrix_500	WRKY43	Not Available	56.80%
Matrix_210	ARR1	Not Available	56.63%
Matrix_91	CRF3	Not Available	56.62%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	56.59%
Matrix_502	AT3G13040	Not Available	56.45%
Matrix_389	ILR3	Not Available	56.30%
Matrix_141	AT3G25990	Not Available	56.27%
Matrix_17	WRKY22	Not Available	56.22%
Matrix_4	ARR14	Not Available	56.15%
Matrix_196	TCP20; AT5G41030	Not Available	56.12%
Matrix_227	AT1G64620	Not Available	56.10%
Matrix_243	RAP2.12; RAP2.2	Not Available	56.01%
Motif_259	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	55.96%
Matrix_16	AT3G04450; PHL1	Not Available	55.93%
Matrix_373	E2FE	Not Available	55.92%
Matrix_174	ZAT2	Not Available	55.92%
Matrix_296	GBF2	Not Available	55.90%
Matrix_142	ZFP8	Not Available	55.88%
Matrix_46	AT4G21895	Not Available	55.82%
Matrix_287	ERF2	Not Available	55.80%
Matrix_254	MYB52	Not Available	55.58%
Matrix_99	DOF4.7	Not Available	55.58%
Matrix_260	CAMTA3	Not Available	55.49%
Matrix_261	ATERF-1	Not Available	55.47%
Matrix_330	MYC2; TT8	Not Available	55.47%
Matrix_465	MYC4	Not Available	55.39%
Matrix_489	RAV1	Not Available	55.36%
Matrix_241	HB-1; AT5G44180	Not Available	55.34%
Matrix_399	TGA1	Not Available	55.22%
Matrix_374	AT5G07580; AT5G61590	Not Available	55.16%
Matrix_206	CUC1; ANAC100	Not Available	55.15%
Matrix_334	AT3G23230	Not Available	55.13%
Matrix_348	AT5G51910	Not Available	55.10%
Matrix_300	bZIP68; bZIP16	Not Available	55.00%
Matrix_249	WRKY11	Not Available	54.94%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	54.91%
Matrix_120	BEE2	Not Available	54.89%
Matrix_418	KNAT6; KNAT2	Not Available	54.87%
Matrix_456	bZIP60	Not Available	54.75%
Matrix_451	STY1	Not Available	54.75%
Matrix_335	HSFB2A	Not Available	54.74%
Matrix_52	ZAT18	Not Available	54.71%
Matrix_507	TCP3	Not Available	54.71%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	54.67%
Matrix_493	AT1G22985; AT1G71130	Not Available	54.60%
Matrix_38	SPL14	Not Available	54.47%
Motif_127	SBOXATRBCS	S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5	54.46%
Matrix_336	AT5G08520	Not Available	54.44%
Matrix_323	BIM3	Not Available	54.42%
Matrix_449	BIM2	Not Available	54.42%
Matrix_37	GATA27	Not Available	54.32%
Matrix_116	ANAC55	Not Available	54.32%
Matrix_408	GATA12	Not Available	54.27%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	54.23%
Matrix_234	RAP2.3	Not Available	54.12%
Matrix_230	ARR11	Not Available	54.11%
Motif_564	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	54.09%
Matrix_352	LEC2	Not Available	54.04%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	54.01%
Matrix_341	HMGA	Not Available	53.98%
Matrix_361	AT1G25550	Not Available	53.97%
Matrix_200	PIL5; AT4G28790; AT4G28800; AT4G28811; AT4G28815	Not Available	53.95%
Matrix_130	TCP16	Not Available	53.94%
Matrix_42	AT2G45680	Not Available	53.92%
Matrix_75	WRKY29	Not Available	53.81%
Matrix_176	MYB98	Not Available	53.77%
Matrix_343	AT2G33710	Not Available	53.73%
Motif_666	MYB binding site promoter	A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes	53.68%
Matrix_6	AT1G70000	Not Available	53.67%
Matrix_146	ORA47	Not Available	53.64%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	53.53%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	53.36%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	53.28%
Matrix_505	GATA8	Not Available	53.14%
Matrix_212	ATHB-12	Not Available	53.12%
Matrix_113	ABI5	Not Available	53.06%
Matrix_482	AT2G25650; AT4G00270	Not Available	52.95%
Motif_54	LTREATLTI78	Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana	52.94%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	52.93%
Matrix_223	MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1	Not Available	52.90%
Matrix_3	WRKY48	Not Available	52.84%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	52.82%
Matrix_324	AT2G01060	Not Available	52.80%
Matrix_430	TOE2	Not Available	52.75%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	52.52%
Matrix_421	GLK1	Not Available	52.49%
Matrix_405	DREB2C	Not Available	52.48%
Matrix_368	ATWRKY56; WRKY45; WRKY75; WRKY24	Not Available	52.39%
Matrix_180	SPL1	Not Available	52.38%
Matrix_370	WRKY50; WRKY51	Not Available	52.21%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	52.09%
Matrix_77	PRR5	Not Available	52.05%
Matrix_272	DEAR4	Not Available	51.98%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	51.98%
Matrix_350	ARR14	Not Available	51.95%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.85%
Motif_544	CACGCAATGMGH3	Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	51.85%
Motif_326	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	51.77%
Matrix_384	ATWRKY17	Not Available	51.69%
Matrix_35	YAB5; YAB3	Not Available	51.67%
Matrix_177	ADOF2	Not Available	51.64%
Matrix_415	WRKY27	Not Available	51.59%
Matrix_85	SPL5	Not Available	51.55%
Matrix_289	WRKY25	Not Available	51.51%
Matrix_506	DRNL; ATERF-4	Not Available	51.50%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	51.28%
Matrix_27	ATAIB; ATNIG1	Not Available	51.22%
Matrix_438	AtbZIP63	Not Available	51.19%
Matrix_322	NST3; ANAC015; BRN2	Not Available	51.12%
Matrix_129	ABF1	Not Available	51.03%
Matrix_281	TCP13	Not Available	51.02%
Matrix_265	NGA3	Not Available	51.01%
Matrix_193	RAV1	Not Available	51.01%
Matrix_452	MYB46	Not Available	50.94%
Matrix_253	ETT	Not Available	50.85%
Matrix_41	anac058	Not Available	50.83%
Matrix_274	EDF3	Not Available	50.80%
Matrix_436	AT3G49930; AZF1	Not Available	50.77%
Matrix_66	AtLEC2	Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis	50.75%
Matrix_72	CDF2	Not Available	50.73%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.71%
Matrix_473	RRTF1	Not Available	50.71%
Motif_454	DRECRTCOREAT	Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)	50.62%
Matrix_9	AT5G04760	Not Available	50.62%
Matrix_197	NAP	Not Available	50.56%
Matrix_379	RHL41	Not Available	50.53%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.52%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.51%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.49%
Matrix_81	YAB1	Not Available	50.41%
Matrix_479	TOE1	Not Available	50.41%
Matrix_503	AT2G37430; AT3G53600	Not Available	50.36%
Matrix_190	ATERF1	Not Available	50.33%
Matrix_135	ABI3	Not Available	50.32%
Matrix_248	ZFP5	Not Available	50.28%
Matrix_494	OBP4	Not Available	50.22%
Matrix_497	AP3	Not Available	50.18%
Matrix_156	POC1	Not Available	50.16%
Matrix_33	SPL11; SPL10; SPL2	Not Available	50.08%
Matrix_188	SPL4	Not Available	50.06%
Matrix_137	SPL1; SPL12	Not Available	50.05%