| Matrix_45 | DRN | Not Available | | 95.25% |
| Matrix_484 | ATERF13 | Not Available | | 92.05% |
| Matrix_295 | ERF1 | Not Available | | 90.10% |
| Matrix_517 | ERF12 | Not Available | | 87.60% |
| Matrix_360 | ORA59 | Not Available | | 85.20% |
| Matrix_5 | AT5G51190; ERF104 | Not Available | | 84.89% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 77.65% |
| Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 73.06% |
| Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 72.29% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 71.97% |
| Matrix_478 | AT1G01250 | Not Available | | 71.55% |
| Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 70.36% |
| Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 70.09% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 68.24% |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 68.18% |
| Matrix_378 | ATERF1 | Not Available | | 68.01% |
| Matrix_426 | CRF1; CRF2 | Not Available | | 67.91% |
| Matrix_91 | CRF3 | Not Available | | 67.29% |
| Matrix_261 | ATERF-1 | Not Available | | 67.08% |
| Matrix_473 | RRTF1 | Not Available | | 66.74% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 66.01% |
| Matrix_234 | RAP2.3 | Not Available | | 65.63% |
| Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 65.52% |
| Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 65.52% |
| Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 65.52% |
| Matrix_138 | RRTF1 | Not Available | | 65.44% |
| Matrix_321 | HRD | Not Available | | 65.26% |
| Matrix_252 | RAP2.6 | Not Available | | 65.24% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 64.55% |
| Matrix_288 | RAP2.3 | Not Available | | 64.51% |
| Matrix_146 | ORA47 | Not Available | | 63.71% |
| Matrix_363 | RAP2.3 | Not Available | | 63.68% |
| Matrix_343 | AT2G33710 | Not Available | | 63.57% |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 63.52% |
| Matrix_224 | ERF1 | Not Available | | 62.41% |
| Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 61.79% |
| Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 61.51% |
| Matrix_462 | ATERF-8 | Not Available | | 61.33% |
| Matrix_272 | DEAR4 | Not Available | | 61.16% |
| Matrix_119 | RRTF1 | Not Available | | 61.15% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 60.53% |
| Matrix_409 | DEAR3 | Not Available | | 60.20% |
| Matrix_448 | ATERF6 | Not Available | | 59.99% |
| Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 59.43% |
| Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | | 59.17% |
| Matrix_406 | ATERF-7 | Not Available | | 58.75% |
| Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 58.62% |
| Matrix_277 | RAP2.6 | Not Available | | 58.36% |
| Matrix_387 | ORA47 | Not Available | | 58.35% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 58.30% |
| Matrix_433 | ATERF1 | Not Available | | 58.21% |
| Matrix_334 | AT3G23230 | Not Available | | 58.01% |
| Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 57.42% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 55.97% |
| Matrix_355 | ERF10; ERF11 | Not Available | | 55.76% |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | | 55.76% |
| Matrix_190 | ATERF1 | Not Available | | 55.74% |
| Matrix_326 | AT5G07310; Rap2.6L; AT5G61890 | Not Available | | 54.92% |
| Motif_37 | AtERF-4 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 54.79% |
| Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 54.62% |
| Matrix_154 | AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130 | Not Available | | 54.58% |
| Matrix_57 | WIN1; SHN3; SHN2 | Not Available | | 54.31% |
| Matrix_454 | AT1G77200; ATERF38; AT4G16750; AT5G52020 | Not Available | | 54.16% |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 54.02% |
| Motif_191 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 53.29% |
| Motif_577 | GRAZMRAB28 | GRA; GC-rich rab activator; Found in the promoter of ABA responsive rab28 gene from maize; Similar (seven of 12 bases) to the GRA element from the maize rab17 promoter (GRAZMRAB17); Found at -138 to -130 | | 53.23% |
| Matrix_287 | ERF2 | Not Available | | 53.02% |
| Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 53.02% |
| Matrix_79 | FUS3 | Not Available | | 52.96% |
| Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 52.57% |
| Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 51.88% |
| Matrix_292 | FTQ4 | Not Available | | 51.68% |
| Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | | 51.67% |
| Matrix_490 | AtMYB77; ATMYB44 | Not Available | | 51.63% |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | | 51.52% |
| Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 51.24% |
| Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | | 51.24% |
| Motif_525 | CRTDREHVCBF2 | Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature | | 51.23% |
| Motif_17 | AUXRETGA1GMGH3 | TGA-box #1 in putative auxin-resonsive element (AUXRE) of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts | | 51.21% |
| Matrix_135 | ABI3 | Not Available | | 51.09% |
| Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | | 51.06% |
| Matrix_244 | DREB2C | Not Available | | 51.05% |
| Motif_312 | OCTAMERMOTIFTAH3H4 | Octamer motif found in promoter of wheat histone genes H3 and H4, and corn histone genes H3 and H4; Arabidopsis histone H4; histone-specific octamer; About half of the Oct motifs are present together with another element, HexA, TCA or CCAAT-box, forming OCES (Oct-containing composite elements); Nucleotide sequences of two corn histone H3 genes. Genomic organization of the corn histone H3 and H4 genes | | 50.94% |
| Matrix_362 | DEAR3 | Not Available | | 50.60% |
| Matrix_61 | ATCBF3 | Not Available | | 50.47% |
| Matrix_346 | AtMYB70; MYB73 | Not Available | | 50.41% |
| Motif_602 | E2Fc; E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | | 50.09% |
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